View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2058_low_12 (Length: 423)
Name: NF2058_low_12
Description: NF2058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2058_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 11 - 406
Target Start/End: Original strand, 2488366 - 2488761
Alignment:
| Q |
11 |
cacagatttcagcatcagcacataaacgtgttttggatagtaaggctatacatctcaacaaaagacattgatttgatgattggaaaattcacttgcaggt |
110 |
Q |
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| T |
2488366 |
cacagatttcagcatcagcacataaatgtgttttggatagtaaggctatacatctcaacaaaagacattgatttgatgattggaaaattcacttgcaggt |
2488465 |
T |
|
| Q |
111 |
tctactttatgtgtcaaagacctatcccattgttctatatctgcgggatgctgataagttgttgtgtagatcacaaaggatatataaactattccagaca |
210 |
Q |
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| T |
2488466 |
tctactttatgtgtcaaagacctatcccattgttctatatatgcgggatgctgataagttgttgtgtagatcacaaaggatatataaactattccagaca |
2488565 |
T |
|
| Q |
211 |
atgttaacgaaactatctggaccaattttgattattggttcgcggattttggattctggtaatgaatgcaaaagagtagatgagatgcttacctctctct |
310 |
Q |
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| T |
2488566 |
atgttaacgaaactatctggaccaattttgattattggttcgcggattttggattctggtaatgaatgcaaaagagtagatgagatgcttacctctctct |
2488665 |
T |
|
| Q |
311 |
tcccttacaacatagaaatcaaaccaccagaagatgaatctcgtcttgtcagctggaagtctcaatttgaagcggatatgaagaagatacagattc |
406 |
Q |
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| T |
2488666 |
tcccttacaacatagaaatcaaaccaccagaagatgaatctcgtcttgtcagctggaagtctcaatttgaagcggatatgaagaagatacagattc |
2488761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 71 - 401
Target Start/End: Complemental strand, 41592747 - 41592417
Alignment:
| Q |
71 |
aaagacattgatttgatgattggaaaattcacttgcaggttctactttatgtgtcaaagacctatcccattgttctatatctgcgggatgctgataagtt |
170 |
Q |
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|||||||| |||||| | |||||| || |||||||||||||||||| ||||||||| || ||||||||||| ||||||||| |||||| ||||| ||| |
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| T |
41592747 |
aaagacatggatttggtaattggacgttttacttgcaggttctactttctgtgtcaaaaacttatcccattgtgctatatctgagggatgttgataggtt |
41592648 |
T |
|
| Q |
171 |
gttgtgtagatcacaaaggatatataaactattccagacaatgttaacgaaactatctggaccaattttgattattggttcgcggattttggattctggt |
270 |
Q |
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|| | ||||||||||| ||||||||| | ||||| | |||||| | || ||| |||||||| ||| ||||| |||||||||| || | ||||||||| |
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| T |
41592647 |
attatctagatcacaaaagatatataacatgttccaaaaaatgttgaagagactctctggaccgattctgattcttggttcgcgagttctagattctggt |
41592548 |
T |
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| Q |
271 |
aatgaatgcaaaagagtagatgagatgcttacctctctcttcccttacaacatagaaatcaaaccaccagaagatgaatctcgtcttgtcagctggaagt |
370 |
Q |
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| T |
41592547 |
aatgaatttgaagaattggatgagaaacttactgtgctcttcccgtacgatatagaaatcagacctccggaagatgaatcacatctcgtcagctggaagt |
41592448 |
T |
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| Q |
371 |
ctcaatttgaagcggatatgaagaagataca |
401 |
Q |
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| T |
41592447 |
cacaattggaagaggatatgaagatgataca |
41592417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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