View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2058_low_18 (Length: 402)

Name: NF2058_low_18
Description: NF2058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2058_low_18
NF2058_low_18
[»] chr5 (3 HSPs)
chr5 (20-397)||(35068912-35069285)
chr5 (20-304)||(35052995-35053280)
chr5 (347-382)||(35053312-35053347)


Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 20 - 397
Target Start/End: Original strand, 35068912 - 35069285
Alignment:
Q  20 tcacctaccatatgtaaaaggacacaacatcacaaattattccattatatataatgttaatgtgcttggtccatacttaagtattgatcaaactatagag 119  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35068912 tcacctaccatgtgtaaaaggacacagcatcacaaattattccattatatataatgttaatgtgcttggtccatacttaagtattgatcaaactatagag 35069011  T
Q  120 gagattaataagtgtaagggaaggattgaattgatagaaaaaattaaattgcttaagagaatggagccaccttttctagcaannnnnnnggtagctcttt 219  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||       |||||||||||    
T  35069012 gagattaataagtgtaagggaaggattgaattgacagaaaaaattcaattgcttaagagaatggagccacgttttctagcaatttttttggtagctcttt 35069111  T
Q  220 catttccactctttgttcagtccttggtgcgtcattacaattttagtgtaagtacacttcttatgctcaatttttcagattcattttaattgnnnnnnnn 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||            
T  35069112 catttccactctttgttcagtccttggtgcgtcattacaattttagtgtaagtacacttcttatgctcaatttttcagattcattttaagtg----aaaa 35069207  T
Q  320 ncgtaagattagttattaagagaaacagttggcataaaagcattatcaaaataatgcttcctaaattcctatgctact 397  Q
     ||| | |||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  35069208 acgtgacattagttaataagagaaaaagttggaataaaagcattatcaaaataatgcttcctaaattcctatgctact 35069285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 20 - 304
Target Start/End: Original strand, 35052995 - 35053280
Alignment:
Q  20 tcacctaccatatgtaaaaggacacaacatcacaaattattccattatatataatgttaatgtgcttggtccatacttaagtattgatcaaactatagag 119  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  35052995 tcacctaccatgtgtaaaaggacacaacctcacaaattattccattatatataatgttaatgtgcttggtc-atacttaagtattgatcaaaccatagag 35053093  T
Q  120 gagattaataagtgtaagggaaggattgaattgata--gaaaaaattaaattgcttaagagaatggagccaccttttctagcaannnnnnnggtagctct 217  Q
    |||||| ||||||||||||||| ||||||||||| |  |||||| || |||||||||||||||||||||||| |||||||||||       |||||||||    
T  35053094 gagattcataagtgtaagggaaagattgaattgacaaagaaaaattttaattgcttaagagaatggagccacgttttctagcaatttttttggtagctct 35053193  T
Q  218 ttcatttccactctttgttcagtccttggtgcgtcattacaattttagtgtaagtacacttcttatgctcaatttttcagattcatt 304  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  35053194 ttcatctccactctttgttcagtccttggtgcgtcattacaattttagtgtaagtacacttcttatgctcaatttttcaggttcatt 35053280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 347 - 382
Target Start/End: Original strand, 35053312 - 35053347
Alignment:
Q  347 gttggcataaaagcattatcaaaataatgcttccta 382  Q
    |||||||||||||||||||||||||| |||||||||    
T  35053312 gttggcataaaagcattatcaaaatagtgcttccta 35053347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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