View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2058_low_2 (Length: 538)
Name: NF2058_low_2
Description: NF2058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2058_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 6e-97; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 273 - 533
Target Start/End: Complemental strand, 30720852 - 30720597
Alignment:
| Q |
273 |
aaatattgtttcaatctaccatgagcatattcatttatattttttgttgtgttaccaaaatgattcaatattcacggtttgtccacaccttcatagnnnn |
372 |
Q |
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| T |
30720852 |
aaatattgtttcaatctaccatgagcatattcatttatattttttgttgtgttaccaaaatgcataa-----cacggtttgtccacaccttcatagtttt |
30720758 |
T |
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| Q |
373 |
nnnctttaagggtttcaatatgggactttcaacatgattcatgaattttggtaatatttcatacttttctgaagtgtacaattgcatatgtatatagttg |
472 |
Q |
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| T |
30720757 |
tttctttaagggtttcaatatggtactttcaacatgattcatgaattttggtaatatttcatacttttctcaagtgtacagttacatatgtatatagttc |
30720658 |
T |
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| Q |
473 |
ctcgtaaagagaatacactaattttcaagcatccatgatggtgttacatatattcttcgac |
533 |
Q |
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| T |
30720657 |
ctcgtaaagagaatacactaattttcaagcatccatgatggtgttacataaattcgtcgac |
30720597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 30721054 - 30720894
Alignment:
| Q |
19 |
ttatctccattcagtttgtttcatgttcgcagagagcgag--gcaaactctcctccaacacgtggatgtggttgttgtcaaagtgattgtgag----gga |
112 |
Q |
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| T |
30721054 |
ttatctccattcagtttgtttcatgttcgcagagagcgagaggcaaactctcctccaacacgtggatgtggttgttgtcaaagtgaatgtgagtgaggga |
30720955 |
T |
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| Q |
113 |
gtagaaggttctagctcacggattgaacatattgatgttgacattgagatgtaatcaattg |
173 |
Q |
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| T |
30720954 |
gtagaaggttctagctcacggattgaacatattgatgttgacattgagatgtaatcaattg |
30720894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 252
Target Start/End: Complemental strand, 30720886 - 30720853
Alignment:
| Q |
219 |
aacatgttgtgtatagcttcccaaccacaacccg |
252 |
Q |
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| T |
30720886 |
aacatgttgtgtatagtttcccaaccacaacccg |
30720853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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