View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2058_low_20 (Length: 378)
Name: NF2058_low_20
Description: NF2058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2058_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 109; Significance: 9e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 213 - 361
Target Start/End: Complemental strand, 17374585 - 17374437
Alignment:
| Q |
213 |
taaatacggatagtttatttaaatctttatattgagtggttgtttatggacacttatttaaatctttatattgagaaaaacttgaaaccaactnnnnnnn |
312 |
Q |
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| T |
17374585 |
taaatacaggtagtttatttaaatctttatattgagtggttgtttatggacacttatttaaatctttatattgagaaaaacttgaaaccaactaaaaaaa |
17374486 |
T |
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| Q |
313 |
nctatatagtcccaacaatgattctgttaatcttggcttggatacagtt |
361 |
Q |
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| T |
17374485 |
actatacagtcccaacaatgattctgttaatcttggctttgatacagtt |
17374437 |
T |
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Target: chr8 (Bit Score: 74; Significance: 7e-34; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 598427 - 598338
Alignment:
| Q |
141 |
taagtcggtgcaatgtaatttcggaaatactcatgatatgcggtttcacgatattatgcatttttgtttatttaaatacggatagtttat |
230 |
Q |
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| T |
598427 |
taagtcggtgcaatgtaatttttgaaatactcatgatgtgcggtttcacgatattatgcatttttgtttatttaaatacgggtagtttat |
598338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 214 - 282
Target Start/End: Complemental strand, 598046 - 597978
Alignment:
| Q |
214 |
aaatacggatagtttatttaaatctttatattgagtggttgtttatggacacttatttaaatctttata |
282 |
Q |
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| T |
598046 |
aaatacggatagtttatttaaatctttatactgagtggttgtttatggacacttatttaaatctttata |
597978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 315 - 361
Target Start/End: Complemental strand, 596943 - 596897
Alignment:
| Q |
315 |
tatatagtcccaacaatgattctgttaatcttggcttggatacagtt |
361 |
Q |
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| T |
596943 |
tatacagtcccaacaataattctgttaatcttggctttgataaagtt |
596897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 43380934 - 43380897
Alignment:
| Q |
1 |
ttaaatgaataattgcatttgtaagtgccacgtgtact |
38 |
Q |
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| T |
43380934 |
ttaaatgaataattgcatttgcaagtgccacgtgtact |
43380897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 17471529 - 17471492
Alignment:
| Q |
1 |
ttaaatgaataattgcatttgtaagtgccacgtgtact |
38 |
Q |
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| T |
17471529 |
ttaaatgaatagttgcatttgcaagtgccacgtgtact |
17471492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 17581685 - 17581722
Alignment:
| Q |
1 |
ttaaatgaataattgcatttgtaagtgccacgtgtact |
38 |
Q |
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| T |
17581685 |
ttaaatgaatagttgcatttgcaagtgccacgtgtact |
17581722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 9270880 - 9270920
Alignment:
| Q |
26 |
tgccacgtgtactcttcaaaaaattaaggtaaatatttata |
66 |
Q |
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| T |
9270880 |
tgccatgtgtacttttcaaaaaattaaggcaaatatttata |
9270920 |
T |
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