View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2058_low_25 (Length: 358)
Name: NF2058_low_25
Description: NF2058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2058_low_25 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 7 - 358
Target Start/End: Complemental strand, 30768770 - 30768419
Alignment:
| Q |
7 |
caaagggcacatgaatcataacaacaacacttaaactttattagttttaaaactcatcgttacaaaaccggttgtagggtgaggagtgactctctttata |
106 |
Q |
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| T |
30768770 |
caaagggcacatgaatcataacaacaacacttaaactttattagttttaaaactcatcgttacaaaaccggttgtagggtgaggagtgactctctttata |
30768671 |
T |
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| Q |
107 |
agcactttccggttagacttgcatttctccaaataaaaacacactcattatcaatatcctcatcaataagcccaaaaccaaccccaccaaatagaaacaa |
206 |
Q |
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| T |
30768670 |
agcactttccggttagacttgcatttctccaaataaaaacacactcattatcaatatcctcatcaataagcccaaaaccaaccccaccaaatagaaacaa |
30768571 |
T |
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| Q |
207 |
ctttccatagaaagcatagagaaggtgagaactagggatgaggagtactggaggagagatagttcaagtagaaggaggacacatagttcgagccaccggt |
306 |
Q |
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| T |
30768570 |
cttttcatagaaagcatagagaaggtgggaactagggatgaggagtactggaggagagatagttcaagtagaaggaggacacatagttcgagccaccggt |
30768471 |
T |
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| Q |
307 |
aaaaaagatcgtcacagcaaggtttacacatcaaaaggtcctcgcgatcgca |
358 |
Q |
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| T |
30768470 |
aaaaaagatcgtcacagcaaggtttacacatcaaaaggtcctcgcgatcgca |
30768419 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 44573423 - 44573371
Alignment:
| Q |
57 |
aactcatcgttacaaaaccgg-ttgtagggtgaggagtgact-ctctttataa |
107 |
Q |
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| T |
44573423 |
aactcatccttacaaaaccggcttgtagggtgaggagtgcctcctctttataa |
44573371 |
T |
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