View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2058_low_27 (Length: 351)
Name: NF2058_low_27
Description: NF2058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2058_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 20 - 324
Target Start/End: Original strand, 34347935 - 34348237
Alignment:
| Q |
20 |
gtacatacatgcatgccctagttgaaggatattggttccatgtcactatannnnnnncatccattaatattatcttgatgtccctccaaatgttggtgtc |
119 |
Q |
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| T |
34347935 |
gtacatacatgcatgccctagttgaaggatattggttccatgtcactatatttttttcatccattaatattatcttgatgtccctccaaatgttggtgtc |
34348034 |
T |
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| Q |
120 |
caaaaatcaactgttgtttcatgagtcactggaaatgtgctagaaactggtaccaaacatagtcctcgactttttagatcttgctttgtgccctcacann |
219 |
Q |
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| T |
34348035 |
caaaaatcaactgttgtttcatgagtcactggaaatgtgctagaaactggtaccaaacatagtcctcgactttttagatcttgctttgtgccctcacatt |
34348134 |
T |
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| Q |
220 |
nnnnnaatttaccagaattctgcattaataaaatttgtaaaagtgttataagacataaacttggaaggnnnnnnnnntcaaccactcataaggtcgcaat |
319 |
Q |
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|||||||||||||||||||| ||||||||| | ||||||||| ||||| |||||||||||| |||||||||||| |||||||||| |
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| T |
34348135 |
tttttaatttaccagaattctgcatcaataaaatt--ttaaagtgttacaagacgtaaacttggaagaaaaacaaaatcaaccactcatgaggtcgcaat |
34348232 |
T |
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| Q |
320 |
attaa |
324 |
Q |
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||||| |
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| T |
34348233 |
attaa |
34348237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 102 - 207
Target Start/End: Original strand, 23872587 - 23872692
Alignment:
| Q |
102 |
cctccaaatgttggtgtccaaaaatcaactgttgtttcatgagtcactggaaatgtgctagaaactggtaccaaacatagtcctcgactttttagatctt |
201 |
Q |
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||||||||||||||||||||| | |||||||| | ||||||||||| ||||||||| |||||||||||||| |||||||| |||| ||| | ||||| | |
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| T |
23872587 |
cctccaaatgttggtgtccaatattcaactgtgggttcatgagtcattggaaatgtactagaaactggtactaaacatagccctctgcttctaagatcct |
23872686 |
T |
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| Q |
202 |
gctttg |
207 |
Q |
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|||||| |
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| T |
23872687 |
gctttg |
23872692 |
T |
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