View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2058_low_28 (Length: 345)
Name: NF2058_low_28
Description: NF2058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2058_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 48695608 - 48695269
Alignment:
| Q |
1 |
acacttagcacataagtgattatgtatacgtaattcctataacaacgcataatagaaccttaaacggttgtcatttaaactataagctgctatcataagc |
100 |
Q |
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| T |
48695608 |
acacttagcacataagtgattatgtatacgatattcctataacaaagtataatagaaacttaaactgttgtcatttaaactataagctgctgtcataagc |
48695509 |
T |
|
| Q |
101 |
tatcttagagaccttacaggaatatgttgaaaacaacttatgaacatctgatacgctgaaaacaacttataccaattgatacgtttaaataattcaatct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48695508 |
tatcttagagaccttacaggaatatgttgaaaacaacttgtgaacatccgatacgctgaaaacaacttataccaattgatacgtttaaataattcaatct |
48695409 |
T |
|
| Q |
201 |
aaacaggtcctaatatggattggaaacaaggacagatttccaacctgattcaaccttggaaagatcaagtatgtcatttatgagttgaagaaccaaatct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48695408 |
aaacaggtcctaatatggattggaaacaaggacagatttccaacctgattcaaccttggaaagatcaagtatgtcatttatgagttgaagaaccaaatct |
48695309 |
T |
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| Q |
301 |
ccagatgacaacatgacatccaaaagctgtctctgctcct |
340 |
Q |
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| T |
48695308 |
ccagatgacaacatgacatccaaaagctgtctttgctcct |
48695269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 234 - 338
Target Start/End: Original strand, 3455028 - 3455132
Alignment:
| Q |
234 |
agatttccaacctgattcaaccttggaaagatcaagtatgtcatttatgagttgaagaaccaaatctccagatgacaacatgacatccaaaagctgtctc |
333 |
Q |
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| T |
3455028 |
agatttctaacctgactcgaccttggaaagatcaagtatatcatttataagttgaagaaccaaatctcctgaagataacatgacatccaaaagctgtctt |
3455127 |
T |
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| Q |
334 |
tgctc |
338 |
Q |
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||||| |
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| T |
3455128 |
tgctc |
3455132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 146
Target Start/End: Original strand, 34035929 - 34035982
Alignment:
| Q |
93 |
tcataagctatcttagagaccttacaggaatatgttgaaaacaacttatgaaca |
146 |
Q |
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||||||||||||||||||| ||| | |||| ||||||||||||||||||||| |
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| T |
34035929 |
tcataagctatcttagagaacttgcgaaaataagttgaaaacaacttatgaaca |
34035982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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