View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2058_low_3 (Length: 536)
Name: NF2058_low_3
Description: NF2058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2058_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 469; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 19 - 531
Target Start/End: Complemental strand, 12921508 - 12920996
Alignment:
| Q |
19 |
aatgtactatcaaatcttgttgattttttgaaccaattttttcgttggcttaatcacttgacgtacaaagaaatgcagatggattacgtaacttcctttg |
118 |
Q |
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| T |
12921508 |
aatgtactatcaaattttgttgattttttgaaccaattttttcgttggcttaatcacttgatgtacaaagaaatgcagatggattacgtaacttcgtttg |
12921409 |
T |
|
| Q |
119 |
gtgacaccgttcttcaaaccccacacaaatgtctagagaggtcagctgccaatttgtacactaggtctgtttttcatatgtttaggccgatgttggaaag |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
12921408 |
gtgacaccgttcttcaaaccccacacaaatgtctagagaggtcagctgccaatttgtacactaggtcagtttttcatatgtttaggccgatgttggaaag |
12921309 |
T |
|
| Q |
219 |
ggcttgtcgttgcaaggttgagccagggggtaatagtggttcaatctttacctatatgttatctaaatatcctagacaagatgttcactggactgttact |
318 |
Q |
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| T |
12921308 |
ggattgtcgttgcaaggttgagccagggggtaatagtggttcaatctttacctatatgttatctaaatatcctcgacaagatgttcactggactgttact |
12921209 |
T |
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| Q |
319 |
ttttgtcaagaaagcttaagatttggttgctcttgtatgaggcttgagtcattgggcattccttgtgagcatattgtatctgttttaattcatcttaaca |
418 |
Q |
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| T |
12921208 |
ttttgtcaagaaagcttaagatttggttgctcttgtatgaggcttgagtcattgggcattccttgtgagcatattgtatctgttttaattcatcttaaca |
12921109 |
T |
|
| Q |
419 |
tcattgtcatgcccagttctattattctgctgagatggacgaaaggtgtgaaagatgctgttaacgctgcaaatgcaaatagttctagccaacatgatcc |
518 |
Q |
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| T |
12921108 |
tcattgtcatgcccatttctattattctgccgagatggacgaaaggtgtgaaagatgctgttaacgctgcaaatgcaaatagttccagccaacttgatcc |
12921009 |
T |
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| Q |
519 |
cgcctttgctact |
531 |
Q |
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|||||||| |||| |
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| T |
12921008 |
cgcctttgttact |
12920996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 19 - 512
Target Start/End: Original strand, 12914587 - 12915079
Alignment:
| Q |
19 |
aatgtactatcaaatcttgttgattttttgaaccaattttttcgttggcttaatcacttgacgtacaaagaaatgcagatggattacgtaacttcctttg |
118 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
12914587 |
aatgtactatcaaatattgttgattttttgaaccaattttttcgttggcttaatcacttgaagtacaaagaaatgcagatggattacgtaacttcgtttg |
12914686 |
T |
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| Q |
119 |
gtgacaccgttcttcaaaccccacacaaatgtctagagaggtcagctgccaatttgtacactaggtctgtttttcatatgtttaggccgatgttggaaag |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
12914687 |
gtgacaccgttcttcaaaccccacacaaatgtctagagaggtcagttgccaatttgtacactaggtcagtttttcatatgtttaggccgatgttggaaag |
12914786 |
T |
|
| Q |
219 |
ggcttgtcgttgcaaggttgagccagggggtaatagtggttcaatctttacctatatgttatctaaatatcctagacaagatgttcactggactgttact |
318 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
12914787 |
ggct-gtcgttgcaaggttgagccagggggtaatagtggttcaatcttaacctatatggtatctaaatatcctagacaagatgttcactggactgttact |
12914885 |
T |
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| Q |
319 |
ttttgtcaagaaagcttaagatttggttgctcttgtatgaggcttgagtcattgggcattccttgtgagcatattgtatctgttttaattcatcttaaca |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12914886 |
ttttgtcaagaaagcttaagatttggttgctcttgtatgaggcttgagtcattgggaattccttgtgagcatattgtatctgttttaattcatcttaaca |
12914985 |
T |
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| Q |
419 |
tcattgtcatgcccagttctattattctgctgagatggacgaaaggtgtgaaagatgctgttaacgctgcaaatgcaaatagttctagccaaca |
512 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
12914986 |
tcattgtcatgcccagttctattattctgccgagatggacgaaaggtgtgaaagatgctgttaacgctgcaaatgcaaatagttccagccaaca |
12915079 |
T |
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