View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2058_low_30 (Length: 342)
Name: NF2058_low_30
Description: NF2058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2058_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 14 - 340
Target Start/End: Complemental strand, 31059725 - 31059397
Alignment:
| Q |
14 |
agacccaaattaaaatatattatatataacacgagcctgctctatataaggtatttagtgaaaaacaacatataaagcaaaatgaggagggatgaaggtc |
113 |
Q |
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| T |
31059725 |
agacccaaattaaaaaatattatttataacacgagcctgctctatataaggtattgagtgaaaagcaacatataaagcagaatgaggagggatgaaggtc |
31059626 |
T |
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| Q |
114 |
gatgtttaggtaatcattcatataatatgctgtattttttaatataagttgattgaatgcaagtactatagggattgaattctataatctatagatataa |
213 |
Q |
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| T |
31059625 |
gatgtttaggtaatcgtacatataatatgctgtattttttaatataagttgattgaatgcaagtactatagggattgaattctataatctatagatataa |
31059526 |
T |
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| Q |
214 |
ttgtattatgtgtaca--tgcttactaatattgaattttaatgattattttactttagggaagaatgagtggccagaggttgtgggaatggacggtgatg |
311 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31059525 |
ttgtattatgtgtacatgtgcttactaatattgaattttaatgattattttactttagggaagaatgagtggccagaggttgtgggaatggacggtgatg |
31059426 |
T |
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| Q |
312 |
aagcagtagagaagattgaaagagagaat |
340 |
Q |
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| T |
31059425 |
aagcagtagagaagattgaaagagagaat |
31059397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 14 - 190
Target Start/End: Complemental strand, 31068363 - 31068184
Alignment:
| Q |
14 |
agacccaaattaaaatatattatatata----acacgagcctgctctatataaggtatttagtgaaaaacaacatataaagcaaaatgaggagggatgaa |
109 |
Q |
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|||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||| || || | ||| |
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| T |
31068363 |
agacccaaattaaattatattatatatatataacacgagcctgctctatataaggtattgagtgaaaagcaacatataaagcagaaa-agcaaaatggaa |
31068265 |
T |
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| Q |
110 |
ggtcgatgtttaggtaatcattcatataatatgctgtattttttaatataagttgattgaatgcaagtactatagggattg |
190 |
Q |
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| T |
31068264 |
ggtcgatgtttaggtaatcatacatataatatgctgtattttttaatttaagttgattgaatgcaagtactatagggattg |
31068184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 224 - 340
Target Start/End: Complemental strand, 31068185 - 31068073
Alignment:
| Q |
224 |
tgtacatgcttactaatattgaattttaatgattattttactttagggaagaatgagtggccagaggttgtgggaatggacggtgatgaagcagtagaga |
323 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31068185 |
tgtacatgcttactaatattgaattttaatgatt----tactttagggaagaataaatggccagaggttgtgggaatggacggtgatgaagcagctgaga |
31068090 |
T |
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| Q |
324 |
agattgaaagagagaat |
340 |
Q |
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|||| |||||||||||| |
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| T |
31068089 |
agatagaaagagagaat |
31068073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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