View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2058_low_32 (Length: 329)
Name: NF2058_low_32
Description: NF2058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2058_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 3723543 - 3723858
Alignment:
| Q |
1 |
tcagcatgaagtttttcttctgccccaatagctttgtcaagaattccacttgatgtagaactatagacaaaaaggtgaactaaatatgggcaatcaatta |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3723543 |
tcagcatgaagtttttcttctgcctcaatagctttgtcaagaactccacttgatgtagaactatagacaaaaaggtgaactaaatatgggcaatcaatta |
3723642 |
T |
|
| Q |
101 |
cttctagcaccacaaagaattgtgaatttaatcaaccaataggagttcatcatcgaccttgccaataattatttaaagatcatttaaatnnnnnnntaga |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3723643 |
cttctaacaccacaaagaattgtgaatttaatcaaccaataggagttcatcatcgaccttgccaataattatttaaagatcatttaaataaaaaattaga |
3723742 |
T |
|
| Q |
201 |
tatataaatcaacttcacatcagaatgagagaatatcaactatcaattatcagtttaaaataatttgatgataaggtcacaaacaaagttttgatgagca |
300 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3723743 |
tatataaaccaacttcacatcagaatgagagaatatcaactatcaattatcagtttgaaataatttgatgataaggtcacaaacaaagttttgatgagca |
3723842 |
T |
|
| Q |
301 |
aatcacatgtgaactt |
316 |
Q |
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|||||||||||||||| |
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| T |
3723843 |
aatcacatgtgaactt |
3723858 |
T |
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