View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2058_low_38 (Length: 284)
Name: NF2058_low_38
Description: NF2058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2058_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 48695624 - 48695890
Alignment:
| Q |
1 |
ttaattttatgtttattcaaacatgcctcagtgatacataaactagatgattatatagactgattcctacctcccaaaatctgcattatgtgtaggagtt |
100 |
Q |
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| T |
48695624 |
ttaattttatgtatattcaaacatgcctcaatgatacataaactagatgattatatacactgattcctacctcccaaaatctgcattatgtgtaggagtt |
48695723 |
T |
|
| Q |
101 |
atgaagttggaagctaccaaatttcgacctagagaggtagtaaagcatgtgcttcagacagctgcggcatcattgcagaaaatattaaccatagaaggac |
200 |
Q |
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| T |
48695724 |
atgaagttggaagctaccaaatttcgacctagagaggtagtaaagcatgtgcttcagacagccgcagcatcattgcagaaaatattaaccatagaaggac |
48695823 |
T |
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| Q |
201 |
atgtagcagatgatgtacctatagaggtgatgacatattaaaaagttgcatgattcttagtgttgcc |
267 |
Q |
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| T |
48695824 |
atgtagcagatgatgtacctatagaggtgatggcatatttaacagttgcatgattcttagtgttgcc |
48695890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 86 - 228
Target Start/End: Complemental strand, 3454914 - 3454772
Alignment:
| Q |
86 |
ttatgtgtaggagttatgaagttggaagctaccaaatttcgacctagagaggtagtaaagcatgtgcttcagacagctgcggcatcattgcagaaaatat |
185 |
Q |
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|||||| |||||| |||||| ||||||||||| ||||| | || ||||||||||||| |||||| || ||||||||||| ||| ||||||||||||| |
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| T |
3454914 |
ttatgtataggagctatgaaattggaagctacaaaattcaggccaagagaggtagtaaggcatgtactccagacagctgcagcaccattgcagaaaatgc |
3454815 |
T |
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| Q |
186 |
taaccatagaaggacatgtagcagatgatgtacctatagaggt |
228 |
Q |
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| T |
3454814 |
taacactggaaggaaatgtagcagatgatatacctattgaggt |
3454772 |
T |
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