View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2058_low_4 (Length: 518)
Name: NF2058_low_4
Description: NF2058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2058_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 427; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 11 - 501
Target Start/End: Complemental strand, 6751189 - 6750699
Alignment:
| Q |
11 |
caaaggttagaaactttatttggcgagtagctcgaaattgcttgccaactcgtgtgaggcttaacgagaagtgtgttcaaattgaaacaatttgtccatg |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
6751189 |
caaaggttagaaactttatttggcgagtagctcgaaattgcttgccaactcgtgtgaggcttagcgagaagggtgttcaaattggaacaatttgtccatg |
6751090 |
T |
|
| Q |
111 |
gtgtaacgttgtcccagaaacaacaacacatattctgatgcggtgtaacaaaagtagagaaacttgggtgaagttgaatttgattaattacatagaccag |
210 |
Q |
| |
|
||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
6751089 |
gtgtaacattgtcccggaaacagcaacacatattctgatgcggtgtaacaaaagtagagaaacttgggtgaagttgaatttgattaattacatagaacag |
6750990 |
T |
|
| Q |
211 |
acccagcggcaacatggtagtattggaggtatgattttctacttattgaacttactatcaaagaacgataaatgtatttttgctatgaatatttggagtt |
310 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6750989 |
gcccagctgcaacatggtagtattggaggtatgattttctacttattgaacttactgtcaaagaaagataaatgtatttttgctatgaatatttggagtt |
6750890 |
T |
|
| Q |
311 |
tgtggaagagtagaaatgtatcaatttgggaccatcaaaatgaggggatgacagaaatcattcatagagggagttacatgttgacagaatggtagaatgc |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
6750889 |
tgtggaagagtagaaatgtatcaatttgggaccatcaaaatgaggggatggcagaaatcattcatagagggagttacatgttgacaaaatggcagaatgc |
6750790 |
T |
|
| Q |
411 |
acgtcaaattgaggagctgccctcgtcacggcaacaaactcatcaagatagggtgagatgacaatggccacccaatagcttcgtgaagtgt |
501 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6750789 |
acatcaaattgaggagctgccctcgtcacggcaacaaactcatcaagatagggtgagatggcaatggccacccaatagcttcgtgaagtgt |
6750699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 11 - 501
Target Start/End: Original strand, 6467340 - 6467831
Alignment:
| Q |
11 |
caaaggttagaaactttatttggcgagtagctcgaaattgcttgccaactcgtgtgaggcttaacgagaagtgtgttcaaattgaaacaatttgtccatg |
110 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
6467340 |
caaaggttagaaattttatttggcgagtagctcgaaattgcttgccaactcgtgtgaggcttagcgagaagggtgttcaaattggaacaatttgtccatg |
6467439 |
T |
|
| Q |
111 |
gtgtaacgttgtcccagaaacaacaacacatattctgatgcggtgtaacaaaagtagagaaacttgggtgaagttgaatttgattaattacatagaccag |
210 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6467440 |
gtgtaacgttgtcccggaaacaacaacacatattctgatgcggtgtaacaaaagtagagaaacttgggtgaagttgaatttgattaattacatagaccag |
6467539 |
T |
|
| Q |
211 |
acccagcggcaacatggtagtattggaggtatgattttctacttattgaacttactatcaaagaacgataaatgtatttttgctatgaatatttggagtt |
310 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
6467540 |
gcccagctgcaacatggtagtattggaggtatgattttctacttattgaacttactgtcgaagaaagataaatgtatttttgctatgaatatttagagtt |
6467639 |
T |
|
| Q |
311 |
tgtggaagagtagaaatgtatcaatttgggaccatcaaaatgaggggatgacagaaatcattcatagagggagttacatgttgacagaatggtagaatgc |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
6467640 |
tgtggaagagtagaaatgtatcaatttgggaccatcaaaatgaagggatggcagaaatcattcatagagggagttacatgttgacagaatggcaaaatgc |
6467739 |
T |
|
| Q |
411 |
acgtcaaattgaggagctgccctcgtcacggcaacaaac-tcatcaagatagggtgagatgacaatggccacccaatagcttcgtgaagtgt |
501 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
6467740 |
acgtcaaattgaggagctgccctcgtcacggcaacaaacttcatcaagataggatgagatggcaatggccacctaatagcttcgtgaagtgt |
6467831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 382 - 501
Target Start/End: Original strand, 6470412 - 6470531
Alignment:
| Q |
382 |
agttacatgttgacagaatggtagaatgcacgtcaaattgaggagctgccctcgtcacggcaacaaactcatcaagatagggtgagatgacaatggccac |
481 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
6470412 |
agttacatgttgacagaatggcagaatgtacgtcaaattgaggagctgccctcgtcatggcaacaaactcatcaagataggatgagatggcaatggccac |
6470511 |
T |
|
| Q |
482 |
ccaatagcttcgtgaagtgt |
501 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
6470512 |
ctaatagcttcgtgaagtgt |
6470531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 417 - 501
Target Start/End: Original strand, 28694745 - 28694829
Alignment:
| Q |
417 |
aattgaggagctgccctcgtcacggcaacaaactcatcaagatagggtgagatgacaatggccacccaatagcttcgtgaagtgt |
501 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
28694745 |
aattgaggagctgcccttgtcacggcaacaaactcatcaagatagggtgagatggcaacggccacccaatagcttcgtgaagtgt |
28694829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 76 - 501
Target Start/End: Complemental strand, 8747326 - 8746901
Alignment:
| Q |
76 |
gagaagtgtgttcaaattgaaacaatttgtccatggtgtaacgttgtcccagaaacaacaacacatattctgatgcggtgtaacaaaagtagagaaactt |
175 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||| |||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8747326 |
gagaagggtgttcaaattggaacaatttgtccatggtgtaatgttgtcccggaaacagcaacacatattctgatgcagtgtaacaaaagtagagaaactt |
8747227 |
T |
|
| Q |
176 |
gggtgaagttgaatttgattaattacatagaccagacccagcggcaacatggtagtattggaggtatgattttctacttattgaacttactatcaaagaa |
275 |
Q |
| |
|
||||||||||| || |||||||||||||||||||| |||||| |||||||||| ||||| |||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
8747226 |
gggtgaagttggatctgattaattacatagaccaggcccagctacaacatggtaatattgaaggtatgattttctacttattgaacttaatttcaaagaa |
8747127 |
T |
|
| Q |
276 |
cgataaatgtatttttgctatgaatatttggagtttgtggaagagtagaaatgtatcaatttgggaccatcaaaatgaggggatgacagaaatcattcat |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
8747126 |
agataaatgtatttttgctatgaatatttggagcttgtggaagagtagaaatgtatcaatttgggaccatcaaaatgaggggatggcagaaatttatcat |
8747027 |
T |
|
| Q |
376 |
agagggagttacatgttgacagaatggtagaatgcacgtcaaattgaggagctgccctcgtcacggcaacaaactcatcaagatagggtgagatgacaat |
475 |
Q |
| |
|
| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||| |||| |
|
|
| T |
8747026 |
acagggagttacaagttgacagaatggtggaatgcacgtcaaattgaggagctgccctcgtcacgacaacaaactcatccagatagggtgaaatggcaat |
8746927 |
T |
|
| Q |
476 |
ggccacccaatagcttcgtgaagtgt |
501 |
Q |
| |
|
| ||| |||||| |||||| |||||| |
|
|
| T |
8746926 |
gaccatccaataacttcgtaaagtgt |
8746901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 11 - 501
Target Start/End: Complemental strand, 6955907 - 6955435
Alignment:
| Q |
11 |
caaaggttagaaactttatttggcgagtagctcgaaattgcttgccaactcgtgtgaggcttaacgagaagtgtgttcaaattgaaacaatttgtccatg |
110 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||| ||||||| || ||||||||| |||||| ||||| |
|
|
| T |
6955907 |
caaaggttagaaactttgtttggtgagtagctcgaaattgcttgccaactcacgtgaggcttagcgagaagggtattcaaattggaacaatctgtcc--- |
6955811 |
T |
|
| Q |
111 |
gtgtaacgttgtcccagaaacaacaacacatattctgatgcggtgtaacaaaagtagagaaacttgggtgaagttgaatttgattaattacatagaccag |
210 |
Q |
| |
|
| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| || |||||||||||||||||||| |
|
|
| T |
6955810 |
--------------cggaaacaacaacacatattctgatgcagtgtaacaaaagtagagaatgttgggtgaagttggatctgattaattacatagaccag |
6955725 |
T |
|
| Q |
211 |
acccagcggcaacatggtagtattggaggtatgattttctacttattgaacttactatcaaagaacgataaatgtatttttgctatgaatatttggagtt |
310 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||||||||| ||||||| | |||||||| ||||||| |||||||||||||||||||||||| | |
|
|
| T |
6955724 |
gcccagccacaacatggtaatattggaggtatgattttctacttat-gaacttaatgtcaaagaaagataaatatatttttgctatgaatatttggagct |
6955626 |
T |
|
| Q |
311 |
tgtggaagagtagaaatgtatcaatttgggaccatcaaaatgaggggatgacagaaatcattcatagagggagttacatgttgacagaatggtagaatgc |
410 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
6955625 |
tgtggaagaggagaaatgtatcaatttgggaccatcaaaatgaggggatggcagaaattattcatagagggagttacatgttgacagaatggcggaatgc |
6955526 |
T |
|
| Q |
411 |
acgtcaaattgaggagctgccctcgtcacggcaacaaactcatcaagatagggtgagatgacaatggccacccaatagcttcgtgaagtgt |
501 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||| |||||||||| ||| ||| | ||||||||||||||||| |||||| |
|
|
| T |
6955525 |
acgtcaaattgaggagctgccgtcgtcacgacaacaaactcatcctgatagggtgaaatggcaacgaccacccaatagcttcgtaaagtgt |
6955435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 408 - 501
Target Start/End: Complemental strand, 34119033 - 34118941
Alignment:
| Q |
408 |
tgcacgtcaaattgaggagctgccctcgtcacggcaacaaactcatcaagatagggtgagatgacaatggccacccaatagcttcgtgaagtgt |
501 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||| |
|
|
| T |
34119033 |
tgcacgtcaaat-gaggagctgccctcgtcatggcaacaaactcatcaagatagggtgagatggcaacaaccacccaatagcttcgtaaagtgt |
34118941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 22009358 - 22009118
Alignment:
| Q |
11 |
caaaggttagaaactttatttggcgagtagctcgaaattgcttgccaactcgtgtgaggcttaacgagaagtgtgttcaaattgaaacaatttgtccatg |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||| |||||||||||| |||||| |||||||| |
|
|
| T |
22009358 |
caaaggttagaaactttatttggcgagtagctcaaaattgctttccaactcgtgtgaggcttagcgagaagggtgttcaaattggaacaatctgtccatg |
22009259 |
T |
|
| Q |
111 |
gtgtaacgttgtcccagaaacaacaacacatattctgatgcggtgtaacaaaagtagagaaacttgggtgaagttgaatttgattaattacatagaccag |
210 |
Q |
| |
|
|||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||| |
|
|
| T |
22009258 |
gtgtaatgttgtcccgaaaacagcaacacatattctgatgtagtgtaacaaaagtagagaaacttgggtgaaattgaatctgattagttacatagaccag |
22009159 |
T |
|
| Q |
211 |
acccagcggcaacatggtagtattggaggtatgattttcta |
251 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
22009158 |
gcccagctgcaacatggtagtattggaggtgtgattttcta |
22009118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 370 - 494
Target Start/End: Complemental strand, 22009096 - 22008972
Alignment:
| Q |
370 |
attcatagagggagttacatgttgacagaatggtagaatgcacgtcaaattgaggagctgccctcgtcacggcaacaaactcatcaagatagggtgagat |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
22009096 |
attcatagagggagttacatgttgacagaatggcggaatgcacgtcaaattgaggagttgccttcgtcacggcaacaaactcatcaagatagggtgtgat |
22008997 |
T |
|
| Q |
470 |
gacaatggccacccaatagcttcgt |
494 |
Q |
| |
|
| ||| ||||||||||||| ||||| |
|
|
| T |
22008996 |
ggcaacggccacccaatagattcgt |
22008972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 8e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 120 - 381
Target Start/End: Complemental strand, 21271068 - 21270808
Alignment:
| Q |
120 |
tgtcccagaaacaacaacacatattctgatgcggtgtaacaaaagtagagaaacttgggtgaagttgaatttgattaattacatagaccagacccagcgg |
219 |
Q |
| |
|
|||||| |||||| | ||||||||||||||| || |||||||||||| |||||| ||||| | ||| ||||| ||| |||| ||||| || ||| | |
|
|
| T |
21271068 |
tgtcccggaaacagcggcacatattctgatgcaatgcaacaaaagtagattaacttgagtgaaacttaatctgattcattgcatacaccaggcctagctg |
21270969 |
T |
|
| Q |
220 |
caacatggtagtattggaggtatgattttctacttattgaacttactatcaaagaacgataaatgtatttttgctatgaatatttggagtttgtggaaga |
319 |
Q |
| |
|
||||||| ||||||| || |||||||||||||||||| ||| || | |||||||| ||||| | ||| ||||||||||||||||||| |||||||||| |
|
|
| T |
21270968 |
caacatgatagtatttgaagtatgattttctacttatggaatatattgtcaaagaaagataa-tatatgtttgctatgaatatttggaacttgtggaaga |
21270870 |
T |
|
| Q |
320 |
gtagaaatgtatcaatttgggaccatcaaaatgaggggatgacagaaatcattcatagaggg |
381 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
21270869 |
gtagaaatgcatcaatttgggaccatcaaaatgaggggattgcagaaattattcatagaggg |
21270808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 11 - 169
Target Start/End: Complemental strand, 19100943 - 19100785
Alignment:
| Q |
11 |
caaaggttagaaactttatttggcgagtagctcgaaattgcttgccaactcgtgtgaggcttaacgagaagtgtgttcaaattgaaacaatttgtccatg |
110 |
Q |
| |
|
||||||||| ||||||||||||| || ||||||||||| ||||||||||||||||| |||||| | ||| |||||||||||| |||||| || | ||| |
|
|
| T |
19100943 |
caaaggttaaaaactttatttggtgaatagctcgaaatcgcttgccaactcgtgtgtggcttagcaggaacggtgttcaaattggaacaatctgacaatg |
19100844 |
T |
|
| Q |
111 |
gtgtaacgttgtcccagaaacaacaacacatattctgatgcggtgtaacaaaagtagag |
169 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19100843 |
gtgtaatgttgtcccggaaacaacaacacatattctgatgcagtgtaacaaaagtagag |
19100785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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