View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2058_low_40 (Length: 278)

Name: NF2058_low_40
Description: NF2058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2058_low_40
NF2058_low_40
[»] chr3 (13 HSPs)
chr3 (190-260)||(1561359-1561430)
chr3 (190-260)||(521868-521939)
chr3 (190-260)||(50612978-50613049)
chr3 (190-260)||(31788329-31788400)
chr3 (190-260)||(36517538-36517609)
chr3 (190-259)||(45166250-45166320)
chr3 (198-260)||(38176493-38176556)
chr3 (190-260)||(52546766-52546837)
chr3 (190-260)||(23643083-23643154)
chr3 (198-260)||(39145283-39145346)
chr3 (198-251)||(34624589-34624643)
chr3 (224-260)||(29011343-29011379)
chr3 (74-132)||(51941548-51941603)
[»] chr1 (9 HSPs)
chr1 (190-260)||(29095626-29095697)
chr1 (190-260)||(1270195-1270266)
chr1 (190-260)||(34475923-34475994)
chr1 (190-258)||(20808971-20809040)
chr1 (190-260)||(24135779-24135848)
chr1 (198-260)||(16254886-16254949)
chr1 (198-260)||(31032801-31032864)
chr1 (190-242)||(34807960-34808013)
chr1 (199-250)||(41646608-41646660)
[»] chr8 (5 HSPs)
chr8 (190-260)||(39112672-39112743)
chr8 (190-260)||(34392132-34392203)
chr8 (190-260)||(41322553-41322624)
chr8 (190-257)||(11653817-11653889)
chr8 (190-258)||(8551513-8551582)
[»] chr7 (5 HSPs)
chr7 (190-260)||(23992054-23992125)
chr7 (78-125)||(44569400-44569447)
chr7 (190-258)||(17611866-17611935)
chr7 (190-260)||(22326882-22326953)
chr7 (190-258)||(27425859-27425928)
[»] chr5 (9 HSPs)
chr5 (190-260)||(32891198-32891269)
chr5 (190-257)||(8692532-8692600)
chr5 (190-260)||(37094015-37094086)
chr5 (190-258)||(4391951-4392020)
chr5 (190-260)||(228047-228118)
chr5 (190-260)||(3456776-3456847)
chr5 (204-260)||(41326552-41326609)
chr5 (198-260)||(29223497-29223558)
chr5 (190-242)||(31644662-31644715)
[»] chr4 (7 HSPs)
chr4 (190-260)||(37674104-37674175)
chr4 (190-260)||(41633241-41633312)
chr4 (190-253)||(24683100-24683164)
chr4 (190-260)||(18375494-18375565)
chr4 (190-260)||(26179314-26179385)
chr4 (190-250)||(41878345-41878406)
chr4 (212-260)||(47839046-47839094)
[»] scaffold0002 (1 HSPs)
scaffold0002 (190-260)||(492690-492761)
[»] chr2 (13 HSPs)
chr2 (190-260)||(13686017-13686088)
chr2 (190-260)||(19898943-19899014)
chr2 (190-260)||(25414937-25415008)
chr2 (190-260)||(42263855-42263926)
chr2 (190-258)||(2752739-2752808)
chr2 (190-260)||(3810373-3810444)
chr2 (190-260)||(14941092-14941163)
chr2 (190-260)||(35676381-35676452)
chr2 (190-260)||(41465003-41465074)
chr2 (190-261)||(29689323-29689392)
chr2 (190-260)||(45093253-45093320)
chr2 (190-260)||(23454364-23454436)
chr2 (193-260)||(28716443-28716511)
[»] chr6 (2 HSPs)
chr6 (190-257)||(7646881-7646949)
chr6 (190-260)||(25935532-25935603)
[»] scaffold0132 (2 HSPs)
scaffold0132 (190-260)||(560-630)
scaffold0132 (190-260)||(8520-8590)


Alignment Details
Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 1561430 - 1561359
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||    
T  1561430 ataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggt 1561359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 521939 - 521868
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||||| ||||||||| |||||||||||||||    
T  521939 ataacatcaagaattcttcaagaataaagagcagccaatcacaatgcactatttgccacaattcaaggaggt 521868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 50613049 - 50612978
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||||| ||||||||| |||||||||||||||    
T  50613049 ataacatcaagaattcttcaagaataaagagcagccaatcacaatgcactatttgccacaattcaaggaggt 50612978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 31788329 - 31788400
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||||| ||||||| | |||||||||||||||    
T  31788329 ataacatcaagaattcttcaagaataaagagcagccaatcacaatgcactatttaccacaattcaaggaggt 31788400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 36517538 - 36517609
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||| ||||||||||||||| |||||||||  ||||||||||| ||||||||| |||||||||||||||    
T  36517538 ataacatcaagaattcttcaagaataaagagcagtcaatcacaatgcactatttgccacaattcaaggaggt 36517609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 45166250 - 45166320
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggagg 259  Q
    ||||||| ||||||||||||| | ||||||||| |||||||||||| ||||||||| ||||||||||||||    
T  45166250 ataacatcaagaattcttcaataataaagagcagccaatcacaatgcactatttgccacaattcaaggagg 45166320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 260
Target Start/End: Complemental strand, 38176556 - 38176493
Alignment:
Q  198 aagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||||||||||| ||||||||| |||||| ||||| |||||||||  ||||||||||||||    
T  38176556 aagaattcttcaagaataaagagcagccaatcgcaatgcactatttgcctcaattcaaggaggt 38176493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 52546766 - 52546837
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||| || |||||||||||| ||||||||| ||||||||||||| |||||||  ||||||||| |||||    
T  52546766 ataacatcaaaaattcttcaagaataaagagcagccaatcacaatgtgctatttgtcacaattcaatgaggt 52546837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 23643154 - 23643083
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||| ||||||||||||||| |||| |  |  ||||||||||| ||||||||| |||||||||||||||    
T  23643154 ataacatcaagaattcttcaagaataaatattagtcaatcacaatgcactatttgccacaattcaaggaggt 23643083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 260
Target Start/End: Original strand, 39145283 - 39145346
Alignment:
Q  198 aagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    |||||||||| |||| |||| |||| ||||| |||||| ||||||||||||||||||| |||||    
T  39145283 aagaattctttaagaataaaaagcagccaattacaatgcactatttgctacaattcaatgaggt 39145346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 34624643 - 34624589
Alignment:
Q  198 aagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaatt 251  Q
    ||||||||||||||| ||||||||| |||||||||||| ||||||| | ||||||    
T  34624643 aagaattcttcaagaataaagagcagccaatcacaatgcactatttaccacaatt 34624589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 260
Target Start/End: Complemental strand, 29011379 - 29011343
Alignment:
Q  224 caatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||||||||||||||| | |||||||||||||||    
T  29011379 caatcacaatgtactatttaccacaattcaaggaggt 29011343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 132
Target Start/End: Original strand, 51941548 - 51941603
Alignment:
Q  74 agctgacactttgtatgagtattaaatattatttttgaagtgtgtataaggtggtatgc 132  Q
    ||||| |||||||||||| |||| ||||||||||||   ||||||||||| ||||||||    
T  51941548 agctggcactttgtatgaatatttaatattattttt---gtgtgtataagatggtatgc 51941603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 29095697 - 29095626
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||||| ||||||||| |||||||||||||||    
T  29095697 ataacatcaagaattcttcaagaataaagagcagccaatcacaatgcactatttgccacaattcaaggaggt 29095626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 1270195 - 1270266
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||| ||||||||||||||| |||||||||||||||| ||||| ||||||||| |||||||||| ||||    
T  1270195 ataacatcaagaattcttcaagaataaagagcaaccaatctcaatgcactatttgccacaattcaagaaggt 1270266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 34475923 - 34475994
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||||| ||||| |||  ||||||||||||||    
T  34475923 ataacatcaagaattcttcaagaataaagagcagccaatcacaatgcactatctgccccaattcaaggaggt 34475994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 258
Target Start/End: Original strand, 20808971 - 20809040
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggag 258  Q
    ||||||| ||||||||||||||| |||||||||  ||||||||||| | ||||||| |||||||||||||    
T  20808971 ataacatcaagaattcttcaagaataaagagcagtcaatcacaatgcattatttgccacaattcaaggag 20809040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 24135779 - 24135848
Alignment:
Q  190 ataacatgaagaattcttcaag-ataaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||| |||||||||||||| |||||||||| ||||||||||||  | |||||| |||||||||||||||    
T  24135779 ataacatcaagaattcttcaagaataaagagcagccaatcacaatg--caatttgccacaattcaaggaggt 24135848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 260
Target Start/End: Original strand, 16254886 - 16254949
Alignment:
Q  198 aagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||||||||||| |||||| || |||||||||||| ||||||||| | |||| ||||||||    
T  16254886 aagaattcttcaagaataaagatcagccaatcacaatgcactatttgccataatttaaggaggt 16254949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 260
Target Start/End: Complemental strand, 31032864 - 31032801
Alignment:
Q  198 aagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||||||||||| |||||| ||  ||||||||||| ||||||||| ||| |||||||||||    
T  31032864 aagaattcttcaagaataaagatcagtcaatcacaatgcactatttgccacagttcaaggaggt 31032801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 34807960 - 34808013
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactattt 242  Q
    ||||||| ||||||||||||| | |||||||||  |||||||||||||||||||    
T  34807960 ataacatcaagaattcttcaaaaataaagagcagtcaatcacaatgtactattt 34808013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 41646608 - 41646660
Alignment:
Q  199 agaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaat 250  Q
    |||||||||||||| |||||||||  ||||||||||| ||||||||| |||||    
T  41646608 agaattcttcaagaataaagagcagtcaatcacaatgcactatttgccacaat 41646660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 39112672 - 39112743
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||| ||||||||||||| | |||||||||||||||||||||| ||||||||| | |||||||||||||    
T  39112672 ataacatcaagaattcttcaaaaataaagagcaaccaatcacaatgcactatttgccataattcaaggaggt 39112743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 34392132 - 34392203
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||| ||||||| ||||||| |||||||||  ||||||||||||||||||||| |||||| ||| ||||    
T  34392132 ataacatcaagaatttttcaagaataaagagcactcaatcacaatgtactatttgccacaatttaagaaggt 34392203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 41322553 - 41322624
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||| ||||||||||||||| |||||||||  ||||||||||| ||||||||  | |||||||||||||    
T  41322553 ataacatcaagaattcttcaagaataaagagcagtcaatcacaatgcactatttgtgaaaattcaaggaggt 41322624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 257
Target Start/End: Complemental strand, 11653889 - 11653817
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagca----accaatcacaatgtactatttgctacaattcaagga 257  Q
    ||||||| ||||||||||||||| |||||||||    | |||||| |||||||||||||| ||||||||||||    
T  11653889 ataacatcaagaattcttcaagaataaagagcagtcaatcaatcataatgtactatttgccacaattcaagga 11653817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 258
Target Start/End: Original strand, 8551513 - 8551582
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggag 258  Q
    ||||||| ||||||||||| ||| |||||| ||||||||||||||| | | ||||| |||||| ||||||    
T  8551513 ataacattaagaattcttcgagaataaagaacaaccaatcacaatgcattgtttgccacaattaaaggag 8551582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 23992125 - 23992054
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||| ||||||||||||||| ||||||||| || ||||||||| ||||||||| |||||||||||||||    
T  23992125 ataacatcaagaattcttcaagaataaagagcagcctatcacaatgcactatttgccacaattcaaggaggt 23992054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 44569447 - 44569400
Alignment:
Q  78 gacactttgtatgagtattaaatattatttttgaagtgtgtataaggt 125  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  44569447 gacactttgtatgagtatttaatattatttttgaagtgtgtataaggt 44569400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 258
Target Start/End: Original strand, 17611866 - 17611935
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggag 258  Q
    ||||||| ||||||||||||||| |||||| |||||||||| |||| | ||||||| |||||||||||||    
T  17611866 ataacatcaagaattcttcaagaataaagaacaaccaatcataatgaattatttgccacaattcaaggag 17611935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 22326882 - 22326953
Alignment:
Q  190 ataacatgaagaattcttcaagat-aaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||| |||||||||||||||  |||||||   ||||||||||||||||||||| |||||||| ||||||    
T  22326882 ataacatcaagaattcttcaagaagaaagagccgtcaatcacaatgtactatttgccacaattcagggaggt 22326953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 27425928 - 27425859
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggag 258  Q
    ||||||| |||||||||| |||| |||||| ||  ||||||||||| | ||||||| |||||||||||||    
T  27425928 ataacatcaagaattcttaaagaataaagaacagtcaatcacaatgcattatttgccacaattcaaggag 27425859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 32891198 - 32891269
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||| ||||||||||||||| |||| |||| |||||||||||| ||||||||| |||||||||||||||    
T  32891198 ataacatcaagaattcttcaagaataaaaagcagccaatcacaatgcactatttgccacaattcaaggaggt 32891269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 257
Target Start/End: Original strand, 8692532 - 8692600
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaagga 257  Q
    ||||||| ||||||||||||||| |||| |||| ||||||| |||||||||||||| ||||||||||||    
T  8692532 ataacatcaagaattcttcaagaataaatagcatccaatcataatgtactatttgccacaattcaagga 8692600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 37094086 - 37094015
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||| || |||||||||||| |||||||||  |||||||| |||||||||||| |||||||||||||||    
T  37094086 ataacatcaacaattcttcaagaataaagagcagtcaatcacattgtactatttgcaacaattcaaggaggt 37094015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 4392020 - 4391951
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggag 258  Q
    ||||||| ||||||||||||||| ||||||||| ||||| |||||| ||| ||||| |||||||||||||    
T  4392020 ataacatcaagaattcttcaagaataaagagcagccaattacaatgcactgtttgccacaattcaaggag 4391951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 228047 - 228118
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||| ||||||| ||||||| |||||| ||| ||||||||||| ||||||| | |||||||||||||||    
T  228047 ataacatcaagaatttttcaagaataaagaacaatcaatcacaatgcactatttaccacaattcaaggaggt 228118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 3456776 - 3456847
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||| | ||||||||||||| |||||||||  || |||||||| ||||||||| |||||||||||||||    
T  3456776 ataacattacgaattcttcaagaataaagagcagtcactcacaatgcactatttgccacaattcaaggaggt 3456847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 260
Target Start/End: Complemental strand, 41326609 - 41326552
Alignment:
Q  204 tcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||||| ||||||||| ||||||||||||| |||||||  |||||||||||||||    
T  41326609 tcttcaagaataaagagcagccaatcacaatgtgctatttgacacaattcaaggaggt 41326552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 260
Target Start/End: Original strand, 29223497 - 29223558
Alignment:
Q  198 aagaattcttcaagataaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||||||||| |||| |||||  ||| ||||||| ||||||||| |||||||||||||||    
T  29223497 aagaattcttcaaaataa-gagcagtcaaccacaatgcactatttgccacaattcaaggaggt 29223558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 31644662 - 31644715
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactattt 242  Q
    ||||||| || |||||||||||| ||||||||| |||||||||||| |||||||    
T  31644662 ataacatcaataattcttcaagaataaagagcagccaatcacaatgcactattt 31644715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 37674175 - 37674104
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||| ||||||||||||||| |||||||||  ||||||||||||||||||| ||||||||||| |||||    
T  37674175 ataacatcaagaattcttcaagactaaagagcagtcaatcacaatgtactatttactacaattcaaagaggt 37674104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 41633241 - 41633312
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||||| |||| |||| |||||||||||||||    
T  41633241 ataacattaagaattcttcaagaataaagagcagccaatcacaatgcactacttgccacaattcaaggaggt 41633312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 24683100 - 24683164
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattca 253  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||||| ||||||||| ||||||||    
T  24683100 ataacatcaagaattcttcaagaataaagagcagccaatcacaatgcactatttgccacaattca 24683164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 18375565 - 18375494
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||| ||||||||||||||| ||||| ||   ||||||||||| ||||||||| |||||||||||||||    
T  18375565 ataacatcaagaattcttcaagaataaagtgcggtcaatcacaatgcactatttgccacaattcaaggaggt 18375494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 26179385 - 26179314
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||| ||||||||||||||| ||||||||| ||||||||| || |||||||   |||||||||||||||    
T  26179385 ataacattaagaattcttcaagaataaagagcagccaatcacagtgcactatttaacacaattcaaggaggt 26179314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 41878345 - 41878406
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaat 250  Q
    ||||||| | |||||||||| || |||||| || |||||||||||| |||||||||||||||    
T  41878345 ataacatcatgaattcttcatgaataaagatcagccaatcacaatgcactatttgctacaat 41878406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 47839094 - 47839046
Alignment:
Q  212 ataaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||||||  ||| ||||||||||||||||| |||||| ||||||||    
T  47839094 ataaagagcagtcaaccacaatgtactatttgccacaatttaaggaggt 47839046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 492690 - 492761
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||||| || |||||  |||||||||||||||    
T  492690 ataacatcaagaattcttcaagaataaagagcagccaatcacaatgcacaatttgtcacaattcaaggaggt 492761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 13686017 - 13686088
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||| ||||||| ||||||| ||||||||| |||||||||||| |||| |||| |||||||||||||||    
T  13686017 ataacatcaagaatttttcaagaataaagagcagccaatcacaatgcactacttgccacaattcaaggaggt 13686088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 19898943 - 19899014
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||||| | ||||||  |||||||||||||||    
T  19898943 ataacattaagaattcttcaagaataaagagcagccaatcacaatgcattatttgtcacaattcaaggaggt 19899014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 25414937 - 25415008
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||| ||||||||||||||| |||||| ||  ||||||||||| ||||||||| |||||||||||||||    
T  25414937 ataacatcaagaattcttcaagaataaagaacagtcaatcacaatgcactatttgccacaattcaaggaggt 25415008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 42263855 - 42263926
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||||| || |||||  |||||||||||||||    
T  42263855 ataacatcaagaattcttcaagaataaagagcagccaatcacaatgcacaatttgtcacaattcaaggaggt 42263926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 2752808 - 2752739
Alignment:
Q  190 ataacatgaagaattcttcaagataaag-agcaaccaatcacaatgtactatttgctacaattcaaggag 258  Q
    ||||||| ||||||||||||||| |||  |||| |||||||||||| ||||||||| |||||||||||||    
T  2752808 ataacattaagaattcttcaagaaaaaatagcagccaatcacaatgcactatttgccacaattcaaggag 2752739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 3810444 - 3810373
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||| || |||||||||||| ||||||| | ||||| |||||| ||||||||| |||||||||||||||    
T  3810444 ataacattaataattcttcaagaataaagagtagccaattacaatgcactatttgccacaattcaaggaggt 3810373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 14941163 - 14941092
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||| || |||||||||||| |||||||||  ||||||||||| ||||||||| ||||||||| |||||    
T  14941163 ataacatcaataattcttcaagaataaagagcagtcaatcacaatgcactatttgccacaattcaaagaggt 14941092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 35676452 - 35676381
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||| |||||||||| |||| |||||||||  ||| ||||||| ||||||||| |||||||||||||||    
T  35676452 ataacatcaagaattctttaagaataaagagcagtcaaccacaatgcactatttgccacaattcaaggaggt 35676381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 41465074 - 41465003
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||| ||||||||||||||| ||||| ||| |  ||||||||| |||||||||  ||||||||||||||    
T  41465074 ataacatcaagaattcttcaagaataaagtgcagcggatcacaatgcactatttgccgcaattcaaggaggt 41465003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 261
Target Start/End: Complemental strand, 29689392 - 29689323
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggaggtt 261  Q
    ||||||| ||||||| || |||| ||||||||||   ||||||||| ||||||||||| ||||||||||||||    
T  29689392 ataacatcaagaattttttaagaataaagagcaa---atcacaatgcactatttgctataattcaaggaggtt 29689323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 45093320 - 45093253
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||| || |||||||||||| ||||||||||    |||||||| ||||||||| |||||||||||||||    
T  45093320 ataacatcaataattcttcaagaataaagagcaa----tcacaatgcactatttgccacaattcaaggaggt 45093253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 23454436 - 23454364
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtact-atttgctacaattcaaggaggt 260  Q
    ||||||| || |||||||||||| |||||||||  ||||||||||| ||| |||||  |||||||||||||||    
T  23454436 ataacataaaaaattcttcaagaataaagagcagtcaatcacaatgcactaatttgacacaattcaaggaggt 23454364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 260
Target Start/End: Complemental strand, 28716511 - 28716443
Alignment:
Q  193 acatgaagaattcttcaag-ataaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    |||| |||||||||||||| ||||| || | || ||||||||| ||||||||| ||||||||| |||||    
T  28716511 acatcaagaattcttcaagaataaatagtagccgatcacaatgcactatttgccacaattcaaagaggt 28716443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 257
Target Start/End: Complemental strand, 7646949 - 7646881
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaagga 257  Q
    ||||||| |||||||||| || | ||||||||| |||||||||||| ||||||||| ||||||||||||    
T  7646949 ataacatcaagaattctttaaaaataaagagcagccaatcacaatgcactatttgccacaattcaagga 7646881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 25935532 - 25935603
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||| ||||||| ||||||| ||||||||| | ||||| |||||||||||||  |||||| ||||||||    
T  25935532 ataacattaagaattattcaagaataaagagcatctaatcataatgtactatttgtcacaatttaaggaggt 25935603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 560 - 630
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||| ||||||||||||||| |||||||||  ||||||||||| ||||||||| |||||| ||||||||    
T  560 ataacatcaagaattcttcaagaataaagagcagtcaatcacaatgcactatttgc-acaatttaaggaggt 630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 8520 - 8590
Alignment:
Q  190 ataacatgaagaattcttcaaga-taaagagcaaccaatcacaatgtactatttgctacaattcaaggaggt 260  Q
    ||||||| ||||||||||||||| |||||||||  ||||||||||| ||||||||| |||||| ||||||||    
T  8520 ataacatcaagaattcttcaagaataaagagcagtcaatcacaatgcactatttgc-acaatttaaggaggt 8590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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