View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2058_low_42 (Length: 261)
Name: NF2058_low_42
Description: NF2058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2058_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 23852493 - 23852250
Alignment:
| Q |
1 |
ttccaaaccctctattaccaccccccatatttctcaatgacacgagagaaggatttaagatatcttgcaacaaagcactatg-ctgtacccaaaactgtg |
99 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
23852493 |
ttccaaaccctctattactaccccccatatttctcaatgacacgagagaaggatttaagatatcttgcaacaaagcactatggctgtacccaaaactgtg |
23852394 |
T |
|
| Q |
100 |
tggggcaatcttagggctaaaataatgtggtttttgaatcattgactcggttctaatcccaattgacctataatcgtaaggtcgaaaaagagtagggtta |
199 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||| |
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| T |
23852393 |
tggggtaatcttagggctaaaataatgtggtttttgaatcattgactcggttctaatcccgattgacctataatcataaggtcgaaaaagagtagagtta |
23852294 |
T |
|
| Q |
200 |
aagtaagattgccctaaacctaaaacaccatcatcatacctttg |
243 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23852293 |
aagtaagattgccctaaacctaaaacaccatcatcatacctttg |
23852250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 132 - 243
Target Start/End: Complemental strand, 23856928 - 23856818
Alignment:
| Q |
132 |
tttgaatcattgactcggttctaatcccaattgacctataatcgtaaggtcgaaaaagagtagggttaaagtaagattgccctaaacctaaaacaccatc |
231 |
Q |
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|||||||||||||||||||| ||| ||||| |||||||||||| ||||||| |||||||||||| ||||||||||||| | |||||||||| |||||| |
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| T |
23856928 |
tttgaatcattgactcggttttaa-cccaagtgacctataatcttaaggtcaaaaaagagtaggattaaagtaagatttctttaaacctaaagtaccatc |
23856830 |
T |
|
| Q |
232 |
atcatacctttg |
243 |
Q |
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|||||| ||||| |
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| T |
23856829 |
atcatatctttg |
23856818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 3156663 - 3156906
Alignment:
| Q |
1 |
ttccaaaccctctattaccaccccccatatttctcaatgacacgagagaaggatttaagatatcttgcaacaaagcactatg-ctgtacccaaaactgtg |
99 |
Q |
| |
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|||||||||| || |||||||||| |||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| | ||||||||||||||| |
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| T |
3156663 |
ttccaaacccgctgttaccacccctcatatttctcaatgacacaagagaagggtttaagatctcttgcaacaaagcactatgacggtacccaaaactgtg |
3156762 |
T |
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| Q |
100 |
tggggcaatcttagggctaaaataatgtggtttttgaatcattgactcggttctaatcccaattgacctataatcgtaaggtcgaaaaagagtagggtta |
199 |
Q |
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||||| |||||||||||||| |||| |||||||||||||||||||||||||||| | ||| | ||||||||||||||||||||||||||||||||| | | |
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| T |
3156763 |
tggggtaatcttagggctaatataaggtggtttttgaatcattgactcggttctgaccccgagtgacctataatcgtaaggtcgaaaaagagtaggataa |
3156862 |
T |
|
| Q |
200 |
aagtaagattgccctaaacctaaaacaccatcatcatacctttg |
243 |
Q |
| |
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|||||||||||||| |||| | || ||| |||||||||||||| |
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|
| T |
3156863 |
aagtaagattgccccaaacttgaagcactgtcatcatacctttg |
3156906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 12 - 193
Target Start/End: Original strand, 3138942 - 3139124
Alignment:
| Q |
12 |
ctattaccaccccccatatttctcaatgacacgagagaaggatttaagatatcttgcaacaaagcactatg-ctgtacccaaaactgtgtggggcaatct |
110 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||| ||||| || |||||||||||||||||||| || ||||||||||| ||||| | ||| |
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|
| T |
3138942 |
ctattaccaacccccatatttctcaatgacacaagagaagggtttaacatctcttgcaacaaagcactatgactatacccaaaactatgtggagtaattc |
3139041 |
T |
|
| Q |
111 |
tagggctaaaataatgtggtttttgaatcattgactcggttctaatcccaattgacctataatcgtaaggtcgaaaaagagta |
193 |
Q |
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||||| |||||||| |||||||||||||||||||||| | ||||| ||||| |||||||||| |||||| |||||||||| |
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|
| T |
3139042 |
tagggttaaaataaggtggtttttgaatcattgactctgatctaaccccaagtgacctataactataaggtgtaaaaagagta |
3139124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 243
Target Start/End: Complemental strand, 3167414 - 3167364
Alignment:
| Q |
193 |
agggttaaagtaagattgccctaaacctaaaacaccatcatcatacctttg |
243 |
Q |
| |
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|||||||||||||| |||||||||||| |||||||||| |||||| |||| |
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|
| T |
3167414 |
agggttaaagtaaggttgccctaaaccaaaaacaccattttcatacttttg |
3167364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 242
Target Start/End: Original strand, 7491154 - 7491199
Alignment:
| Q |
197 |
ttaaagtaagattgccctaaacctaaaacaccatcatcataccttt |
242 |
Q |
| |
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||||||| ||||||||||||||||||| ||||| |||||||||||| |
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| T |
7491154 |
ttaaagtgagattgccctaaacctaaagcaccagcatcataccttt |
7491199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 242
Target Start/End: Original strand, 7498875 - 7498920
Alignment:
| Q |
197 |
ttaaagtaagattgccctaaacctaaaacaccatcatcataccttt |
242 |
Q |
| |
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||||||| ||||||||||||||||||| ||||| |||||||||||| |
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| T |
7498875 |
ttaaagtgagattgccctaaacctaaagcaccagcatcataccttt |
7498920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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