View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2058_low_5 (Length: 517)
Name: NF2058_low_5
Description: NF2058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2058_low_5 |
 | |
|
| [»] scaffold0161 (1 HSPs) |
| | |
|
| [»] scaffold0408 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 7 - 499
Target Start/End: Original strand, 6889385 - 6889879
Alignment:
| Q |
7 |
tccaagaatatgttagaaagtgcaactagactcaaataaataatttagctatttagtttataagaaaaattatgttagtttgtctttcctttgagttgtt |
106 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6889385 |
tccaacaatatgttagagagtgcaactagactcaaataaataatttagctatttagtttataagtaaaattatgttagtttgtctttcctttgagttgtt |
6889484 |
T |
|
| Q |
107 |
gttagtttgaccttttaagttgggtctttagtctttaggcccattagggttactatccgttaccctcaagtgcgagtttccacctcttatacttgatcca |
206 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6889485 |
gttagttggaccttt-aagttgggtctttagtctttaggtccattagggttactatccattactctcaagtgcgagtttccacctcttatacttgatttg |
6889583 |
T |
|
| Q |
207 |
aaccaagattcacaccggctcccccaccaagttgaaccagt-tttaataccacttgatggatggagaggtcatgggagcgacaagagcaacaacgaacca |
305 |
Q |
| |
|
||||||||| ||| || ||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6889584 |
aaccaagatccactcctgctcccccaccaagtcgaaccagtctttaataccaattgatggatggagaggtcatgggagcgacaagagcaacaacgaacca |
6889683 |
T |
|
| Q |
306 |
atacttcagaagcataagagagggagacccatagcttcatcctaaactttatgacattag--atatatgtgcaatcttatttatattcaacattttactt |
403 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6889684 |
atacttcagaagcataagagagggagactcatagcttcatcctaaactttatgacattagatatatatgtgtaatcttatttatattcaacattttactc |
6889783 |
T |
|
| Q |
404 |
attcataagcgatgtgctaaccgcgtacatttgaacccatcaatttgaatagccaccgagaataagttcatcccgacctacatcctatgatcaatt |
499 |
Q |
| |
|
|||||||| ||||||| ||||||||||| ||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6889784 |
attcataaacgatgtgttaaccgcgtacctttgaacccatcaatttaaatagccacgcagaataagttcaccccgacctacatcctatgatcaatt |
6889879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 9665079 - 9664973
Alignment:
| Q |
15 |
tatgttagaaagtgcaactagactcaaataaataatttagctatttagtttataagaaaaattatgttagtttgtctttcctttgagttgttgttagttt |
114 |
Q |
| |
|
||||||| | ||||||| |||| | |||||||||||||||||||||| |||| ||| |||||||| ||||||||||||| |||||| ||||| |||||| |
|
|
| T |
9665079 |
tatgttatatagtgcaattagattaaaataaataatttagctatttaatttagaagtaaaattatattagtttgtcttt-ctttgatttgtttttagttg |
9664981 |
T |
|
| Q |
115 |
gacctttt |
122 |
Q |
| |
|
|||||||| |
|
|
| T |
9664980 |
gacctttt |
9664973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 6e-32; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 1774795 - 1774650
Alignment:
| Q |
16 |
atgttagaaagtgcaactagactcaaataaataatttagctatttagtttataagaaaaattatgttagtttgtctttcctttgagttgttgttagtttg |
115 |
Q |
| |
|
|||||||| |||| | |||||| |||| |||||||||||||||||||||||||| | || ||||||||||||||||||||| ||||||| |||||| | |
|
|
| T |
1774795 |
atgttagagagtgatattagactgaaatgaataatttagctatttagtttataagtataagaatgttagtttgtctttcctttaagttgttattagttgg |
1774696 |
T |
|
| Q |
116 |
accttttaagttgggtctttagtctttaggcccattagggttactat |
162 |
Q |
| |
|
|| |||||||| ||| |||||||||||||||| ||||||||||||| |
|
|
| T |
1774695 |
gcc-tttaagttaggtatttagtctttaggcccgttagggttactat |
1774650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 24977401 - 24977261
Alignment:
| Q |
17 |
tgttagaaagtgcaactagactcaaataaataatttagctatttagtttataagaaaaattatgttagtttgtctttcctttgagttgttgttagtttga |
116 |
Q |
| |
|
||||||| ||||||| |||| | ||| |||||||||||||||||||||| || |||||||| |||||||||||||| ||||||||||| ||||| | |
|
|
| T |
24977401 |
tgttagagagtgcaattagatttcaatgaataatttagctatttagtttaagagcaaaattatattagtttgtctttcttttgagttgtttctagttggg |
24977302 |
T |
|
| Q |
117 |
ccttttaagttgggtctttagtctttaggcccattagggtta |
158 |
Q |
| |
|
|||||| || | ||||||||||||||||| ||||||||||| |
|
|
| T |
24977301 |
cctttt-agctaggtctttagtctttaggttcattagggtta |
24977261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 27 - 163
Target Start/End: Original strand, 34144460 - 34144594
Alignment:
| Q |
27 |
tgcaactagactcaaataaataatttagctatttagtttataagaaaaattatgttagtttgtctttcctttgagttgttgttagtttgaccttttaagt |
126 |
Q |
| |
|
||||| ||| ||||||| |||||||||| ||| ||||||| || || ||||| ||||||| |||||| ||||||||||| ||||| | |||| |||| |
|
|
| T |
34144460 |
tgcaattaggctcaaatgaataatttagatatctagtttaagagtaagattatattagtttatctttcacttgagttgttgctagttgggcctt--aagt |
34144557 |
T |
|
| Q |
127 |
tgggtctttagtctttaggcccattagggttactatc |
163 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
34144558 |
taggtctttagtctttaggcccattagggttactatc |
34144594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 24976973 - 24977099
Alignment:
| Q |
17 |
tgttagaaagtgcaactagactcaaataaataatttagctatttagtttataagaaaaattatgttagtttgtctttcctttgagttgttgttagtttga |
116 |
Q |
| |
|
||||||| ||||||| |||| | |||| |||||||||| ||||||||||| || |||||||| |||||||||||||| ||||||||||| ||||| | |
|
|
| T |
24976973 |
tgttagagagtgcaattagatttaaatgaataatttagttatttagtttaagagcaaaattatattagtttgtctttcttttgagttgtttctagttggg |
24977072 |
T |
|
| Q |
117 |
ccttttaagttgggtctttagtctttag |
144 |
Q |
| |
|
|||||| || | ||| |||||||||||| |
|
|
| T |
24977073 |
cctttt-agctaggtttttagtctttag |
24977099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 164
Target Start/End: Original strand, 3270607 - 3270751
Alignment:
| Q |
17 |
tgttagaaagtgcaactagactcaaataaataatttagctatttagtttataagaaaaattatgttagtttgtctttcctttgagttgttgttagtttga |
116 |
Q |
| |
|
||||||| |||| || |||||| |||||||| |||||| ||||||| ||| | |||||||| |||||| ||||||| ||||||| ||||||||| | |
|
|
| T |
3270607 |
tgttagatagtgaaattagacttaaataaatgatttagatatttagcttaagattaaaattatattagttggtctttcacttgagttattgttagttggg |
3270706 |
T |
|
| Q |
117 |
ccttttaagttgggtctttagtctttaggcccattagggttactatcc |
164 |
Q |
| |
|
|||| | ||| ||||||||||||| || ||||||||||||||||||| |
|
|
| T |
3270707 |
ccttat--gttaggtctttagtcttaag-cccattagggttactatcc |
3270751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 6e-26; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 33 - 164
Target Start/End: Complemental strand, 38010859 - 38010728
Alignment:
| Q |
33 |
tagactcaaataaataatttagctatttagtttataagaaaaattatgttagtttgtctttcctt-tgagttgttgttagtttgaccttttaagttgggt |
131 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||| ||| | |||||| |||||||||||||| || |||||||| |||||| || | |||||||||||| |
|
|
| T |
38010859 |
tagactcaaataaataatttacctatttaatttagaagtataattatattagtttgtctttcattgagagttgtttttagttggatc-tttaagttgggt |
38010761 |
T |
|
| Q |
132 |
ctttagtctttaggcccattagggttactatcc |
164 |
Q |
| |
|
|||||||||||| || ||||||||||| ||||| |
|
|
| T |
38010760 |
ctttagtctttaagctcattagggttagtatcc |
38010728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 33 - 164
Target Start/End: Complemental strand, 3223127 - 3222999
Alignment:
| Q |
33 |
tagactcaaataaataatttagctatttagtttataagaaaaattatgttagtttgtctttcctttgagttgttgttagtttgaccttttaagttgggtc |
132 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||| || |||||||| |||||||||| ||| |||||||||||| ||||| | || ||||||| |||| |
|
|
| T |
3223127 |
tagacttaaatgaataatttagctatttagtttaagagtaaaattatattagtttgtccttcttttgagttgttgctagttgggcc--ttaagttaggtc |
3223030 |
T |
|
| Q |
133 |
tttagtctttaggcccattagggttactatcc |
164 |
Q |
| |
|
||||||| ||| ||||||||||||||| |||| |
|
|
| T |
3223029 |
tttagtc-ttaagcccattagggttaccatcc |
3222999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 63 - 158
Target Start/End: Original strand, 47431129 - 47431223
Alignment:
| Q |
63 |
tttataagaaaaattatgttagtttgtctttcctttgagttgttgttagtttgaccttttaagttgggtctttagtctttaggcccattagggtta |
158 |
Q |
| |
|
|||| ||| ||||| || ||||||||| |||||||| | ||||| ||||| | ||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
47431129 |
tttagaagcaaaatcatattagtttgtatttccttttaattgtttctagtta-agctttttagttgggtctttagtctttaggtccattagggtta |
47431223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 50391775 - 50391815
Alignment:
| Q |
169 |
ccctcaagtgcgagtttccacctcttatacttgatccaaac |
209 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
50391775 |
ccctcaagtgtaagtttccaccacttatacttgatccaaac |
50391815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 37 - 153
Target Start/End: Original strand, 27065611 - 27065725
Alignment:
| Q |
37 |
ctcaaataaataatttagctatttagtttataagaaaaattatgttagtttgtctttcctttgagttgttgttagtttgaccttttaagttgggtcttta |
136 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||| |||||||| ||||||| ||||| |||||||||||| ||||| | ||||| | ||| || |||| |
|
|
| T |
27065611 |
ctcaaataaataatttagatatttaatttataagtaaaattatattagtttatcttttatttgagttgttgctagttgggccttt--aattgagttttta |
27065708 |
T |
|
| Q |
137 |
gtctttaggcccattag |
153 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
27065709 |
gtctttaggctcattag |
27065725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 37 - 153
Target Start/End: Original strand, 27086714 - 27086828
Alignment:
| Q |
37 |
ctcaaataaataatttagctatttagtttataagaaaaattatgttagtttgtctttcctttgagttgttgttagtttgaccttttaagttgggtcttta |
136 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||| |||||||| ||||||| ||||| |||||||||||| ||||| | ||||| | ||| || |||| |
|
|
| T |
27086714 |
ctcaaataaataatttagatatttaatttataagtaaaattatattagtttatcttttatttgagttgttgctagttgggccttt--aattgagttttta |
27086811 |
T |
|
| Q |
137 |
gtctttaggcccattag |
153 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
27086812 |
gtctttaggctcattag |
27086828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0161 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0161
Description:
Target: scaffold0161; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 33 - 144
Target Start/End: Original strand, 22711 - 22821
Alignment:
| Q |
33 |
tagactcaaataaataatttagctatttagtttataagaaaaattatgttagtttgtctttcctttgagttgttgttagtttgaccttttaagttgggtc |
132 |
Q |
| |
|
|||||| |||||||| |||||| |||| |||||||||| |||||||| ||||| |||||||||||| | ||||| |||||| ||| |||||||| | || |
|
|
| T |
22711 |
tagacttaaataaatgatttagatattaagtttataagtaaaattattttagtctgtctttcctttaaattgtttttagttaaacc-tttaagttagttc |
22809 |
T |
|
| Q |
133 |
tttagtctttag |
144 |
Q |
| |
|
|||||||||||| |
|
|
| T |
22810 |
tttagtctttag |
22821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 58 - 164
Target Start/End: Original strand, 14101144 - 14101249
Alignment:
| Q |
58 |
tttagtttataagaaaaattatgttagtttgtctttcctttgagttgttgttagtttgaccttttaagttgggtctttagtctttaggcccattagggtt |
157 |
Q |
| |
|
||||||||| ||| | |||||| |||||||||||||| |||||||||| |||||| | ||||| || || ||| |||||||||||||| |||||||||| |
|
|
| T |
14101144 |
tttagtttaaaagtataattatattagtttgtctttcaattgagttgtttttagttgggcctttaaa-ttaggtttttagtctttaggctcattagggtt |
14101242 |
T |
|
| Q |
158 |
actatcc |
164 |
Q |
| |
|
||||||| |
|
|
| T |
14101243 |
actatcc |
14101249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 14099694 - 14099744
Alignment:
| Q |
16 |
atgttagaaagtgcaactagactcaaataaataatttagctatttagttta |
66 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14099694 |
atgttagagagtgcaactagactcaaataaataatttagatatttagttta |
14099744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 72 - 164
Target Start/End: Original strand, 39643211 - 39643300
Alignment:
| Q |
72 |
aaaattatgttagtttgtctttcctttgagttgttgttagtttgaccttttaagttgggtctttagtctttaggcccattagggttactatcc |
164 |
Q |
| |
|
|||||||| ||| |||||||||| || |||||||| ||||| | |||| ||||| ||||||||||||| || ||||||||||||||||||| |
|
|
| T |
39643211 |
aaaattatattattttgtctttcactttagttgttgctagttgggcctt--aagttaggtctttagtcttaag-cccattagggttactatcc |
39643300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0408 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0408
Description:
Target: scaffold0408; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 10036 - 10086
Alignment:
| Q |
16 |
atgttagaaagtgcaactagactcaaataaataatttagctatttagttta |
66 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10036 |
atgttagagagtgcaactagactcaaataaataatttagatatttagttta |
10086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 81 - 159
Target Start/End: Original strand, 21045794 - 21045870
Alignment:
| Q |
81 |
ttagtttgtctttcctttgagttgttgttagtttgaccttttaagttgggtctttagtctttaggcccattagggttac |
159 |
Q |
| |
|
|||||||||||||| ||||||||||| | ||| |||||| ||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
21045794 |
ttagtttgtctttcgcttgagttgttgctcgttggacctt--aagttaggtctgtagtctttaggcccattagggttac |
21045870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 164
Target Start/End: Complemental strand, 3726559 - 3726416
Alignment:
| Q |
16 |
atgttagaaagtgcaactagactcaaataaataatttagctatttagtttataagaaaaattatgttagtttgtctttcctttgagttgttgttagtttg |
115 |
Q |
| |
|
|||||| | |||| ||||||||||||||||||||||||| |||||| || | ||| | |||||| |||||||| || ||| | ||||| ||||| | |
|
|
| T |
3726559 |
atgttaaagagtgtaactagactcaaataaataatttagttatttatttgagaagtataattatattagtttg----tcattttaattgtttctagttgg |
3726464 |
T |
|
| Q |
116 |
accttttaagttgggtctttagtctttaggcccattagggttactatcc |
164 |
Q |
| |
|
| | ||||| || |||||||||||||||| | |||||||||||||||| |
|
|
| T |
3726463 |
atc-tttaaattaggtctttagtctttagatctattagggttactatcc |
3726416 |
T |
|
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Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 38621690 - 38621648
Alignment:
| Q |
16 |
atgttagaaagtgcaactagactcaaataaataatttagctat |
58 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38621690 |
atgttagagagtgcaactagactcaaataaataatttagctat |
38621648 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 36323836 - 36323784
Alignment:
| Q |
61 |
agtttataagaaaaattatgttagtttgtctttcctttgagttgttgttagtt |
113 |
Q |
| |
|
|||||||||| |||||||| ||| ||||||||||||||||||||||| ||||| |
|
|
| T |
36323836 |
agtttataagtaaaattatattaatttgtctttcctttgagttgttgctagtt |
36323784 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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