View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2058_low_54 (Length: 227)
Name: NF2058_low_54
Description: NF2058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2058_low_54 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 48695035 - 48695261
Alignment:
| Q |
1 |
actgaataaaaccattcacattacaggttgattgtttgattcaatcattaagatctccctttatctaattagctagtttttgcagcaataaagcttatta |
100 |
Q |
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| T |
48695035 |
actgaataaaaccattcacattacaggttgattgtttgattcaatcattaaaatctccctttatctaattaattagtttttgtagcaataaagcttatta |
48695134 |
T |
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| Q |
101 |
tgtttccctcatctttttaatagaggaaactatgagagcaaagcaagtgctggcaacaatgtcacatgagataagatctccactttctggtgttgttagc |
200 |
Q |
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| T |
48695135 |
tgtttccctcatctttttaatagaggaaactatgagagcaaagcaagtgctggcaacaatgtcacatgagataagatctccactttctggtgttgttagc |
48695234 |
T |
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| Q |
201 |
atggctgaaattctttccaccacaaaa |
227 |
Q |
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| T |
48695235 |
atggctgaaattctttccaccacaaaa |
48695261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 118 - 215
Target Start/End: Complemental strand, 3455251 - 3455154
Alignment:
| Q |
118 |
taatagaggaaactatgagagcaaagcaagtgctggcaacaatgtcacatgagataagatctccactttctggtgttgttagcatggctgaaattctt |
215 |
Q |
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| T |
3455251 |
taatagaggagacaatgagagcaaaacaaatgttggcaacaatgtctcatgagataagatcaccgctttctggtgttgttagcatggctgaaattctt |
3455154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 118 - 215
Target Start/End: Complemental strand, 3479616 - 3479519
Alignment:
| Q |
118 |
taatagaggaaactatgagagcaaagcaagtgctggcaacaatgtcacatgagataagatctccactttctggtgttgttagcatggctgaaattctt |
215 |
Q |
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| T |
3479616 |
taatagaggagacaatgagagcaaaacaaatgttggcaacaatgtctcatgagataagatcaccactttctgatgttgttagcatggccaaaattctt |
3479519 |
T |
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