View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2058_low_55 (Length: 220)
Name: NF2058_low_55
Description: NF2058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2058_low_55 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 36871224 - 36871419
Alignment:
| Q |
18 |
ctatggacattcttgttccatttgtttgtgctatcacacggtgttccacactcttgtacttgccatttgttattacctgtttgtacaaaatagtgtcaga |
117 |
Q |
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| T |
36871224 |
ctatggacattcttgttccatttgtttgtgctatcacacggtgttccacactcttgtacttgccatttgttattacctgtttgtacaaaatagtgtcaga |
36871323 |
T |
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| Q |
118 |
taaagtgtcctgttttttgcacttgagagatataaatgctaaaaatagtaaccgtatcccaagatgatttttcatattagtgtcgaatattcttgg |
213 |
Q |
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| T |
36871324 |
taaagtgtcctgttttttgcacttgagagatataaatgctaaaaatagtaaccgtatcccaagatgatttttcatattagtgtcgaatatttttgg |
36871419 |
T |
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Target: chr3 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 37629844 - 37629765
Alignment:
| Q |
18 |
ctatggacattcttgttccatttgtttgtgctatcacacggtgttccacactcttgtacttgccatttgttattacctgt |
97 |
Q |
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|||| |||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37629844 |
ctatagacattcttgttccatcagtttgtgctaccacacggtgttccacacttttgtacttgccatttgttattacctgt |
37629765 |
T |
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