View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2058_low_9 (Length: 458)
Name: NF2058_low_9
Description: NF2058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2058_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Original strand, 30768015 - 30768442
Alignment:
| Q |
18 |
ttcagaagggtagttttgaaaattgatggatgaagaagtagaagatgtagttggnnnnnnnggtataggatcagtttcaacattatgtggtgaaatgaaa |
117 |
Q |
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| T |
30768015 |
ttcagaagggtagttttgaaaattgatggatgaagaagtagaagatgtagttggaaaaaaaggtataggatcagtttcaacattatgtggtgaaatgaaa |
30768114 |
T |
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| Q |
118 |
gctgaattatggttaccttgattctcacttaattgtcttaaaagatgaaaactgtaaccattagattctgatgtttctccaacaaccattccacttgagt |
217 |
Q |
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| T |
30768115 |
gctgaattatggttaccttgattctcacttaattgtcttaaaagatgaaaactgtaaccattagattctgatgtttctccaacaaccattccacttgagt |
30768214 |
T |
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| Q |
218 |
ttgcaactacattctgaacttcttctagaggtttcagagtttgattttcgccgattggatgccatggaggaagctccgcgagcttgtcaatggaagactt |
317 |
Q |
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| T |
30768215 |
ttgcaactacattctgaacttcttctagaggtttcagagtttgattttcgctgattggatgccatggaggaagctccgcgagcttgtcaatggaagactt |
30768314 |
T |
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| Q |
318 |
tgctttcttgatgagccaatccactgctttgcttggtctgtcgtagccgaggcgatcttgaacatcgtagaattcgatggctgtgtgtgctgagagtcga |
417 |
Q |
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| T |
30768315 |
tgctttcttgatgagccaatccactgctttgcttggtctgtcgtagccgaggcgatcttgaacatcgtagaattcgatggctgtgtgtgctgagagtcga |
30768414 |
T |
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| Q |
418 |
accctgcgatcgcgaggaccttttgatg |
445 |
Q |
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| T |
30768415 |
accctgcgatcgcgaggaccttttgatg |
30768442 |
T |
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Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 271 - 440
Target Start/End: Original strand, 39077242 - 39077411
Alignment:
| Q |
271 |
attggatgccatggaggaagctccgcgagcttgtcaatggaagactttgctttcttgatgagccaatccactgctttgcttggtctgtcgtagccgaggc |
370 |
Q |
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||||||| |||||| ||||||| | || |||||||||| |||||| || || ||||| |||||||| || ||||| || ||||||||||||||||| | |
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| T |
39077242 |
attggattccatggtggaagctgatcaagtttgtcaatggcagacttagcctttttgataagccaatcaacagctttactcggtctgtcgtagccgagac |
39077341 |
T |
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| Q |
371 |
gatcttgaacatcgtagaattcgatggctgtgtgtgctgagagtcgaaccctgcgatcgcgaggaccttt |
440 |
Q |
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| T |
39077342 |
ggtcttgaacatcatagaattgaattgctgtgtgtgctgataatcgaacacgtcgatcacgaggaccttt |
39077411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 319 - 416
Target Start/End: Complemental strand, 22328097 - 22328000
Alignment:
| Q |
319 |
gctttcttgatgagccaatccactgctttgcttggtctgtcgtagccgaggcgatcttgaacatcgtagaattcgatggctgtgtgtgctgagagtcg |
416 |
Q |
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||||| || ||||||||||| |||||||| ||||| | |||||||||||| |||||||| || |||||||||| || || ||||| ||||||||||| |
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| T |
22328097 |
gcttttttaatgagccaatcgactgctttacttggccggtcgtagccgagacgatcttgcacgtcgtagaattgaatcgcagtgtgggctgagagtcg |
22328000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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