View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20590_low_1 (Length: 1408)
Name: NF20590_low_1
Description: NF20590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20590_low_1 |
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| [»] scaffold0047 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 673; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 673; E-Value: 0
Query Start/End: Original strand, 10 - 736
Target Start/End: Original strand, 47366454 - 47367177
Alignment:
| Q |
10 |
agcacagataatgttcactgatattttttgaaaaccctgatcccttgtacagttagaaatgtaacatttaataatatttacagatggacgaaaacagtga |
109 |
Q |
| |
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||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
47366454 |
agcacagataatgatcactgatcttttttgaaaaccctgatcccttgtacagttagaaatgtaacatttaat---atttacagatggacgaaaacagtga |
47366550 |
T |
|
| Q |
110 |
gcgaaagtgggatgacagcattttaatgaagacagaggtagattcttctagcataagcaagaaagaagctattattaggaaagaaagagtaaaagaatac |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47366551 |
gcgaaagtgggatgacagcattttaatgaagacagaggtagattcttctagcataagcaagaaagaagctattattaggaaagaaagagtaaaagaatac |
47366650 |
T |
|
| Q |
210 |
tcatataaccatagggtaagaagctcttaagactagttttactcttactaattttcatactaactgagaaatcctttcagaaatcagctgaatcagaaag |
309 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47366651 |
tcatataaccatagggtaagaagctcttaagcctagttttactcttactaattttcatactaactgagaaatcctttcagaaatcagctgaatcagaaag |
47366750 |
T |
|
| Q |
310 |
aaaaattggaagatggaagtactggatggagcagtgggtagacacacagcattctaagagtaaagaacttgaagatttagactcagtttttggttcacac |
409 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
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| T |
47366751 |
aaaaattggaagatggaagtactggatggagcagtgggtagacacacagcattctaagagtaaagaacttgaagatttagactcagttttcggttcacgc |
47366850 |
T |
|
| Q |
410 |
tgtagagaaatggaggattgtggaagaagacagctaaaatttagacaaattcagagacaaaatgaagttgaaagattcgactctccattactatcttcaa |
509 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47366851 |
tgtagagaagtggaggattgtggaagaagacagctaaaatttagacaaattcagagacaaaatgaagttgaaagattcgactctccattactatcttcaa |
47366950 |
T |
|
| Q |
510 |
gaaaatatttacaccataggagcaaaaatttagagggagaagaccattcctttcaaagctctcatagaattccaacatacatggttgcaacaaaatcaac |
609 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||| |
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| T |
47366951 |
gaaaatatttacaccataggagcaaaaatttagagggagaagaccattcctttcaaagatctcacacaattccaacatacatggttgcaacaaaatcaac |
47367050 |
T |
|
| Q |
610 |
acaagcaaaagtaagatcaacaagcacaccaaaaacaagaataggaaggaattgggacatgagctctgattgctattcaccaagcaaaagaatgataaat |
709 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
47367051 |
acaagcaaaagtaagatcaacaagcacaccaaaaacaagaataggaaggaattgggacatgagctctgattgctattcaccaagcaaaagaatgatcaat |
47367150 |
T |
|
| Q |
710 |
aataatcaacaacaaggatctcctagc |
736 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
47367151 |
aataatcaacaacaaggatctcctagc |
47367177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 237; E-Value: 1e-130
Query Start/End: Original strand, 1127 - 1392
Target Start/End: Original strand, 47367175 - 47367444
Alignment:
| Q |
1127 |
agccatatatgtactcgatcttgcatccagtattacaaaaaggaagtacatccaatagttgtgagaaagtaaaactcctaagaatgtccat----tgttt |
1222 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
47367175 |
agccatatatgtactcgatcttgcatccagtattacaaaaaggaagtacatccaatagttgtgagaaagtaaaactcctaagaatgtccatatattgttt |
47367274 |
T |
|
| Q |
1223 |
taaatttcaagaaatatttcttggcttacgttaaagttaaacttcatgtttcaagcattcatagaatcaatatatcatagatgttcataaaccaaaatat |
1322 |
Q |
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||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
47367275 |
taaatttcaagaaatatttcttggcttacgtaaaaattaaacttcatgtttcaagcattcatagaatcaatatatcatagatgttcatacaacaaaatat |
47367374 |
T |
|
| Q |
1323 |
ttatccaacccaccaaaaatcaagcactttcatgtttcaagcaatcaactaaaactcaatatatcatagt |
1392 |
Q |
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| T |
47367375 |
ttatccaacccaccaaaaatcaagcactttcatgtttcaagcaatcaactaaaactcaatatatcatagt |
47367444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 316 - 397
Target Start/End: Original strand, 39455390 - 39455468
Alignment:
| Q |
316 |
tggaagatggaagtactggatggagcagtgggtagacacacagcattctaagagtaaagaacttgaagatttagactcagtt |
397 |
Q |
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| T |
39455390 |
tggaagatggaggta-tggatgaagcagtgggtagacacaa--cattctaaaaataaagaacctgaagatttagactcagtt |
39455468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 622 - 668
Target Start/End: Original strand, 39455476 - 39455522
Alignment:
| Q |
622 |
aagatcaacaagcacaccaaaaacaagaataggaaggaattgggaca |
668 |
Q |
| |
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|||||||||| |||||| ||||| ||| ||||||||||||||||||| |
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| T |
39455476 |
aagatcaacaggcacacaaaaaataaggataggaaggaattgggaca |
39455522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 51; Significance: 1e-19; HSPs: 2)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 91 - 229
Target Start/End: Original strand, 15976 - 16114
Alignment:
| Q |
91 |
agatggacgaaaacagtgagcgaaagtgggatgacagcattttaatgaagacagaggtagattcttctagcataagcaagaaagaagctattattaggaa |
190 |
Q |
| |
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|||||||| ||||||||| |||||||||||||||| | |||| ||||| |||||||||| ||||| |||| | ||||||||||| ||||||| || |
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| T |
15976 |
agatggactcaaacagtgaaagaaagtgggatgacagtactttattgaaggaagaggtagatgcttcttgcatgatcaagaaagaaggcattattaagag |
16075 |
T |
|
| Q |
191 |
agaaagagtaaaagaatactcatataaccatagggtaag |
229 |
Q |
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||||||| ||||||||||| ||| ||| ||||| ||||| |
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| T |
16076 |
agaaagaataaaagaatacacatttaatcatagagtaag |
16114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047; HSP #2
Raw Score: 47; E-Value: 4e-17
Query Start/End: Original strand, 316 - 398
Target Start/End: Original strand, 16454 - 16536
Alignment:
| Q |
316 |
tggaagatggaagtactggatggagcagtgggtagacacacagcattctaagagtaaagaacttgaagatttagactcagttt |
398 |
Q |
| |
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||||||||||| ||||||| ||||||| |||||||| ||||| | |||||| || |||||||| ||||||||||||||||||| |
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| T |
16454 |
tggaagatggaggtactggctggagcaatgggtagatacacaactttctaaaagcaaagaactcgaagatttagactcagttt |
16536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1349 - 1392
Target Start/End: Complemental strand, 48446728 - 48446683
Alignment:
| Q |
1349 |
ctttcatgtttcaagcaatcaactaaaactc--aatatatcatagt |
1392 |
Q |
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|||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
48446728 |
ctttcatgtttcaagcaatcaattaaaactcaaaatatatcatagt |
48446683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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