View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20590_low_2 (Length: 320)
Name: NF20590_low_2
Description: NF20590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20590_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 16 - 302
Target Start/End: Complemental strand, 45028470 - 45028184
Alignment:
| Q |
16 |
catagtttgcaatcaattgtcacatcatttaagtcatcatcatccttctttattgtagaagtcagacatatatcaaccaattactgcaaaataaagaaaa |
115 |
Q |
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| T |
45028470 |
catagtttgcaatcaattgtcacatcatttaagtcatcatcatccttctttattgtagaagtcagacatatatcaaccaattactgcaaaataaagaaaa |
45028371 |
T |
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| Q |
116 |
taataaaccaacaaatactaacttgtttaccgcatgcataactagaaagaaagaaggnnnnnnnctacatgcttaccctatggtaaccgttctcgttata |
215 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
45028370 |
taataaaccaacaaatactaacttgtttaccacatgcataactagaaagaaagaaggaaaaaaactacatgcttaccctatggtaaccgttctcgttata |
45028271 |
T |
|
| Q |
216 |
catagcaataccacaagagccatttgtagaattccagaactggtgtccattttcaaatagtgattttggcagatcataattgttatt |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45028270 |
catagcaataccacaagagccatttgtagaattccagaactggtgtccattttcaaatagtgattttggcagatcataattgttatt |
45028184 |
T |
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