View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20590_low_3 (Length: 281)
Name: NF20590_low_3
Description: NF20590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20590_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 11 - 263
Target Start/End: Complemental strand, 45028436 - 45028184
Alignment:
| Q |
11 |
catcatcatccttctttattgtagaagtcagacatatatcaaccaattactgcaaaataaagaaaataataaaccaacaaatactaacttgtttaccgca |
110 |
Q |
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| T |
45028436 |
catcatcatccttctttattgtagaagtcagacatatatcaaccaattactgcaaaataaagaaaataataaaccaacaaatactaacttgtttaccaca |
45028337 |
T |
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| Q |
111 |
tgcataactagaaagaaagaaggnnnnnnnctacatgcttaccctatggtaaccgttctcgttatacatagcaataccacaagagccatttgtagaattc |
210 |
Q |
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| T |
45028336 |
tgcataactagaaagaaagaaggaaaaaaactacatgcttaccctatggtaaccgttctcgttatacatagcaataccacaagagccatttgtagaattc |
45028237 |
T |
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| Q |
211 |
cagaactggtgtccattttcaaatagtgattttggcagatcataattgttatt |
263 |
Q |
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| T |
45028236 |
cagaactggtgtccattttcaaatagtgattttggcagatcataattgttatt |
45028184 |
T |
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