View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20591_high_3 (Length: 450)

Name: NF20591_high_3
Description: NF20591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20591_high_3
NF20591_high_3
[»] chr7 (21 HSPs)
chr7 (1-192)||(8655285-8655476)
chr7 (261-450)||(8655020-8655208)
chr7 (1-169)||(8647660-8647828)
chr7 (1-175)||(8668418-8668592)
chr7 (1-190)||(13332125-13332318)
chr7 (1-162)||(3148337-3148498)
chr7 (1-159)||(10492976-10493134)
chr7 (1-106)||(7876809-7876914)
chr7 (2-149)||(6790389-6790536)
chr7 (1-180)||(1302259-1302438)
chr7 (30-106)||(8591420-8591496)
chr7 (1-180)||(8660192-8660371)
chr7 (19-111)||(29576982-29577074)
chr7 (30-103)||(8602759-8602832)
chr7 (24-168)||(8584534-8584678)
chr7 (24-167)||(8630189-8630332)
chr7 (29-88)||(29581168-29581227)
chr7 (18-164)||(27829337-27829483)
chr7 (1-82)||(17269146-17269227)
chr7 (23-160)||(17261360-17261497)
chr7 (19-103)||(8610689-8610773)
[»] chr1 (3 HSPs)
chr1 (1-179)||(4677515-4677693)
chr1 (1-167)||(15596021-15596186)
chr1 (18-160)||(34465240-34465382)
[»] chr4 (7 HSPs)
chr4 (1-189)||(9323039-9323227)
chr4 (1-189)||(9377518-9377706)
chr4 (1-190)||(9335011-9335199)
chr4 (24-178)||(30776067-30776221)
chr4 (36-160)||(35133422-35133546)
chr4 (42-89)||(23586538-23586585)
chr4 (42-89)||(23595371-23595418)
[»] chr5 (2 HSPs)
chr5 (1-175)||(28220900-28221074)
chr5 (21-167)||(42554182-42554328)
[»] chr2 (9 HSPs)
chr2 (25-169)||(12235758-12235901)
chr2 (1-166)||(43626282-43626447)
chr2 (25-159)||(14705432-14705566)
chr2 (25-160)||(7543245-7543380)
chr2 (27-162)||(12244404-12244539)
chr2 (29-159)||(12257917-12258047)
chr2 (24-101)||(16661064-16661141)
chr2 (17-103)||(16656591-16656677)
chr2 (25-100)||(12000361-12000436)
[»] chr6 (1 HSPs)
chr6 (2-171)||(28911271-28911432)
[»] chr8 (2 HSPs)
chr8 (21-103)||(43745849-43745928)
chr8 (21-66)||(43431054-43431099)


Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 8655476 - 8655285
Alignment:
Q  1 ctgtgtggcttgacgatcacaatagagttgagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8655476 ctgtgtggcttgacgatcacaatagagttgagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggtt 8655377  T
Q  101 gattggcaatggagctgagaatcaatctgctaccaaccccgaaaacactgtatttggtaaatttctatttttattctctattacttcatgca 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8655376 gattggcaatggagctgagaatcaatctgctaccaaccccgaaaacactgtatttggtaaatttctatttttattctctattacttcatgca 8655285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 261 - 450
Target Start/End: Complemental strand, 8655208 - 8655020
Alignment:
Q  261 atcataatgaaaatcactagatgctactcaaatgtagttgtgtcacaatcaatcattggctgatgcgattactataatcctgtgattgtgaaccaaaatt 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8655208 atcataatgaaaatcactagatgctactcaaatgtagttgtgtcacaatcaatcattggctgatgcgattactataatcctgtgattgtgaaccaaaatt 8655109  T
Q  361 taaaacttgatttgcacaaataaatgatgagaatttactattaatatctttattattannnnnnnnagatgctaagaggttaattggtag 450  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||    
T  8655108 taaaacttgatttgcacaaataaatgatgagaatttactattaatatctttattatt-ttttttttagatgctaagaggttaattggtag 8655020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 8647828 - 8647660
Alignment:
Q  1 ctgtgtggcttgacgatcacaatagagttgagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggtt 100  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||| ||| ||||||||||    
T  8647828 ctgtgtggcttgatgaacacaatagagttgagattattcacaatgatcaaggaaacagaactacaccttcttttgttgctttcaccgatgatcaaaggtt 8647729  T
Q  101 gattggcaatggagctgagaatcaatctgctaccaaccccgaaaacactgtatttggtaaatttctatt 169  Q
    ||||||  |||  ||| | |||||  ||||| | |||||    |||||||| |||||||||||||||||    
T  8647728 gattggtgatgccgctaaaaatcaggctgcttctaaccctaccaacactgtctttggtaaatttctatt 8647660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 8668592 - 8668418
Alignment:
Q  1 ctgtgtggcttgacgatcacaatagagttgagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggtt 100  Q
    |||||||||||||  | ||| | ||||||||||||||||||||||||||||| ||  |||  ||||||||| ||||||||||||   || | ||||||||    
T  8668592 ctgtgtggcttgatcaacaccaaagagttgagattattcacaatgatcaaggaaaccgaataacaccttcttttgttgctttcaacaatgaacaaaggtt 8668493  T
Q  101 gattggcaatggagctgagaatcaatctgctaccaaccccgaaaacactgtatttggtaaatttctatttttatt 175  Q
    ||||||| |||  ||| |||||||||||||||| ||||| ||||||||| | |||||||||||||||||| ||||    
T  8668492 gattggcgatgctgctaagaatcaatctgctactaaccctgaaaacactatctttggtaaatttctatttctatt 8668418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 13332125 - 13332318
Alignment:
Q  1 ctgtgtggcttgacgatcacaatagagttgagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggtt 100  Q
    ||||||||||||| || ||| | ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||   || ||||||| ||    
T  13332125 ctgtgtggcttgatgaacaccaaagagttgagattattcacaatgatcaaggaaatagaactacaccttcttttgttgctttcaacaatgatcaaagatt 13332224  T
Q  101 gattggcaatggagctgagaatcaatctgctaccaaccccgaaaacactgtatttg----gtaaatttctatttttattctctattacttcatg 190  Q
    ||||||  |||  ||  ||||||||||||| || ||||| ||||||||| | ||||    |||||||||| ||| |||||| | ||||||||||    
T  13332225 gattggtgatgctgccaagaatcaatctgccactaaccctgaaaacactatctttggtacgtaaatttctgtttctattctttgttacttcatg 13332318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 3148498 - 3148337
Alignment:
Q  1 ctgtgtggcttgacgatcacaatagagttgagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggtt 100  Q
    |||| ||||| || || ||||| ||||||||||||||||||||||| |||||||| | ||| ||||||||| ||||||||||||||||| ||||||||||    
T  3148498 ctgtttggctcgatgagcacaacagagttgagattattcacaatgaccaaggcaacaaaaccacaccttcttttgttgctttcactgatgatcaaaggtt 3148399  T
Q  101 gattggcaatggagctgagaatcaatctgctaccaaccccgaaaacactgtatttggtaaat 162  Q
    | ||||  |||  ||| |||||||| || | || ||||| ||||||||||| ||||||||||    
T  3148398 ggttggtgatgctgctaagaatcaagctcccacaaaccctgaaaacactgtttttggtaaat 3148337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 10492976 - 10493134
Alignment:
Q  1 ctgtgtggcttgacgatcacaatagagttgagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggtt 100  Q
    |||| |||||||| || ||| | |||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||   || ||||||||||    
T  10492976 ctgtatggcttgatgaacaccaaagagttgaaattattcacaatgatcaaggaaatagaactacaccttcttttgttgctttcaacaatgatcaaaggtt 10493075  T
Q  101 gattggcaatggagctgagaatcaatctgctaccaaccccgaaaacactgtatttggta 159  Q
    ||| ||  |||  ||| ||||||||||||| || ||||| |||||||| || |||||||    
T  10493076 gatcggtgatgctgctaagaatcaatctgccactaaccctgaaaacaccgtctttggta 10493134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 7876809 - 7876914
Alignment:
Q  1 ctgtgtggcttgacgatcacaatagagttgagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggtt 100  Q
    ||||||||||||| || ||||||||||| || |||||||||||||| |||||||| ||||| ||||||||| |||||||||||||  || ||||||||||    
T  7876809 ctgtgtggcttgatgaacacaatagagtcgaaattattcacaatgaacaaggcaacagaacaacaccttcttttgttgctttcacgaatgatcaaaggtt 7876908  T
Q  101 gattgg 106  Q
    ||||||    
T  7876909 gattgg 7876914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 2 - 149
Target Start/End: Complemental strand, 6790536 - 6790389
Alignment:
Q  2 tgtgtggcttgacgatcacaatagagttgagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttg 101  Q
    |||||||||||| || ||||||||||||||||||||||||||||| ||||| || | ||| ||||||||| ||||||||||||| ||| | |||||||||    
T  6790536 tgtgtggcttgatgaacacaatagagttgagattattcacaatgaccaaggtaacaaaaccacaccttcttttgttgctttcaccgatgaccaaaggttg 6790437  T
Q  102 attggcaatggagctgagaatcaatctgctaccaaccccgaaaacact 149  Q
    || ||  |||  ||| || ||||| |||| ||||||||  ||||||||    
T  6790436 atcggtgatgctgctaagtatcaagctgccaccaacccgcaaaacact 6790389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 1302438 - 1302259
Alignment:
Q  1 ctgtgtggcttgacgatcacaatagagttgagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggtt 100  Q
    |||||||||| ||  ||||||||||||| ||||| ||  |||| || |||||||| | ||| ||||| ||| ||||||||||||| ||| ||||||||||    
T  1302438 ctgtgtggctggagaatcacaatagagtagagatcatctacaacgaccaaggcaacaaaacaacaccgtcttttgttgctttcaccgatgatcaaaggtt 1302339  T
Q  101 gattggcaatggagctgagaatcaatctgctaccaaccccgaaaacactgtatttggtaaatttctatttttattctcta 180  Q
    ||| ||  |||  ||| |||||||  |||| ||||| || ||||| ||||| |||||||||||||| ||| |||||||||    
T  1302338 gatcggtgatgctgctaagaatcaggctgcaaccaatcctgaaaatactgtttttggtaaatttctctttgtattctcta 1302259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 8591496 - 8591420
Alignment:
Q  30 gagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgattgg 106  Q
    ||||||||||||||||||||||| ||||||| |||||||||| |||||||||| ||| || ||||||||||||||||    
T  8591496 gagattattcacaatgatcaaggaaatagaattacaccttcttttgttgcttttactaatgatcaaaggttgattgg 8591420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 8660371 - 8660192
Alignment:
Q  1 ctgtgtggcttgacgatcacaatagagttgagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggtt 100  Q
    |||||||||| ||  |||||||| |||| ||||| ||  |||| || ||||| || | ||| ||||||||  ||||||||||||||||  ||||||||||    
T  8660371 ctgtgtggctggagaatcacaatcgagtcgagatcatctacaacgaccaaggaaacaaaacaacaccttcatttgttgctttcactgacgatcaaaggtt 8660272  T
Q  101 gattggcaatggagctgagaatcaatctgctaccaaccccgaaaacactgtatttggtaaatttctatttttattctcta 180  Q
    ||||||  |||  ||| |||||||  |||| ||||| || | ||||||||| |||||| ||||||||||| |||||||||    
T  8660271 gattggtgatgctgctaagaatcaggctgcaaccaatcctgtaaacactgtttttggttaatttctatttgtattctcta 8660192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 29576982 - 29577074
Alignment:
Q  19 acaatagagttgagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgattggcaatg 111  Q
    ||||| ||| |||||| || ||||||||||||||||||||||| |||||||||||||| |||||||||||||  | |||||| ||||| ||||    
T  29576982 acaatcgagctgagatcatccacaatgatcaaggcaatagaaccacaccttctgttgtagctttcactgattcactaaggttaattggtaatg 29577074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 8602832 - 8602759
Alignment:
Q  30 gagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgat 103  Q
    ||||||||||||||||||||||| || |||||||| |||||| |||||||||| |||||| || ||||||||||    
T  8602832 gagattattcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgataaaaggttgat 8602759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 168
Target Start/End: Original strand, 8584534 - 8584678
Alignment:
Q  24 agagttgagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgattggcaatggagctgagaatc 123  Q
    |||||||||||||||||||| ||| ||||||||| ||  ||||||||  |||||||||| || ||| ||||||||||| ||||   ||  ||| || |||    
T  8584534 agagttgagattattcacaacgatgaaggcaataaaatcacaccttcctttgttgcttttaccgatgatcaaaggttggttggtggtgctgctaaggatc 8584633  T
Q  124 aatctgctaccaaccccgaaaacactgtatttggtaaatttctat 168  Q
    |  |||||| |||||| || |||||||| ||||||| ||||||||    
T  8584634 aggctgctatcaacccagagaacactgtctttggtatatttctat 8584678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 167
Target Start/End: Complemental strand, 8630332 - 8630189
Alignment:
Q  24 agagttgagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgattggcaatggagctgagaatc 123  Q
    |||||||||||||||||||||||| ||||||||| ||  ||||||||  | |||||||| || ||| ||||||||||| ||||   ||  ||| || |||    
T  8630332 agagttgagattattcacaatgatgaaggcaataaaatcacaccttccttcgttgcttttaccgatgatcaaaggttggttggtggtgctgctaaggatc 8630233  T
Q  124 aatctgctaccaaccccgaaaacactgtatttggtaaatttcta 167  Q
    |  |||| | ||||||  |||||||||| ||||||| |||||||    
T  8630232 aggctgccatcaacccacaaaacactgtctttggtatatttcta 8630189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 29581168 - 29581227
Alignment:
Q  29 tgagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactga 88  Q
    |||||| || |||||||||||||||||| |||| |||||||||||||| |||||||||||    
T  29581168 tgagatcatccacaatgatcaaggcaatggaaccacaccttctgttgtagctttcactga 29581227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 27829337 - 27829483
Alignment:
Q  18 cacaatagagttgagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgattggcaatggagctg 117  Q
    ||||| ||||| ||||||||||||||||| |||||||| |  || |||||||||  |||||||||||| ||  | || |||||||||||  |||  |||     
T  27829337 cacaacagagtggagattattcacaatgaacaaggcaacaagacaacaccttcttgtgttgctttcacggacaaacagaggttgattggtgatgctgcta 27829436  T
Q  118 agaatcaatctgctaccaaccccgaaaacactgtatttggtaaattt 164  Q
    |||| ||| ||||| |||||||  |||||||| | ||||||| ||||    
T  27829437 agaaccaagctgcttccaaccctcaaaacactatctttggtatattt 27829483  T

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Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 17269227 - 17269146
Alignment:
Q  1 ctgtgtggcttgacgatcacaatagagttgagattattcacaatgatcaaggcaatagaactacaccttctgttgttgcttt 82  Q
    ||||||||| ||| || |||  ||||||||||||||| ||||||||||||||||| | |||||| || ||| ||||||||||    
T  17269227 ctgtgtggcatgaagaacacggtagagttgagattatacacaatgatcaaggcaacaaaactactccgtcttttgttgcttt 17269146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 160
Target Start/End: Complemental strand, 17261497 - 17261360
Alignment:
Q  23 tagagttgagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgattggcaatggagctgagaat 122  Q
    |||||||||||| ||||||||||||||||| || | || ||| |||||| ||||||||||  || |  || |||||||||| ||  |||  ||| |||||    
T  17261497 tagagttgagatcattcacaatgatcaaggaaacaaaattactccttcttttgttgcttttgctaaagatgaaaggttgatcggtgatgccgctaagaat 17261398  T
Q  123 caatctgctaccaaccccgaaaacactgtatttggtaa 160  Q
    ||| |||| |  ||||| |||||||| || ||||||||    
T  17261397 caagctgccataaacccagaaaacaccgtctttggtaa 17261360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 8610773 - 8610689
Alignment:
Q  19 acaatagagttgagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgat 103  Q
    |||| |||| |||||| || || ||||| ||||| || ||||| || |||||| ||||||||||| ||| | |||||||||||||    
T  8610773 acaacagagctgagataatccataatgagcaaggaaacagaaccactccttcttttgttgctttctctggtgatcaaaggttgat 8610689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 6e-44; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 4677515 - 4677693
Alignment:
Q  1 ctgtgtggcttgacgatcacaatagagttgagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggtt 100  Q
    |||||||||| ||  ||||||| ||||| ||||||||| ||||||| |||||||| | ||| ||||||||| |||||||||| |||||| ||||||||||    
T  4677515 ctgtgtggctggagaatcacaacagagtggagattatttacaatgaacaaggcaacaaaacaacaccttcttttgttgcttttactgatgatcaaaggtt 4677614  T
Q  101 gattggcaatggagctgagaatcaatctgctaccaaccccgaaaacactgtatttggtaaatttctatttttattctct 179  Q
    |||||| ||||  ||| ||||||||||||| |||||| | ||||||||||| |||||||||||||||||| ||||||||    
T  4677615 gattggtaatgctgctaagaatcaatctgccaccaactctgaaaacactgtctttggtaaatttctatttctattctct 4677693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 15596186 - 15596021
Alignment:
Q  1 ctgtgtggcttgacgatcacaatagagttgagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggtt 100  Q
    ||||||||||||| || || |||||||| |||||||| |||||||| ||||| || |||| |||||||||| ||||| |||||||| || ||||||||||    
T  15596186 ctgtgtggcttgatgaacagaatagagtcgagattatccacaatgaccaaggaaacagaattacaccttcttttgtttctttcactaatgatcaaaggtt 15596087  T
Q  101 gattggcaatggagctgagaatcaatctgctaccaaccccgaaaacactgtatttggtaaatttcta 167  Q
    ||||||  |||  ||| ||| |||| ||||  || ||||| ||||||| || |||||||||||||||    
T  15596086 gattggtgatgctgctaagagtcaagctgcctccgaccccaaaaacac-gtctttggtaaatttcta 15596021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 34465240 - 34465382
Alignment:
Q  18 cacaatagagttgagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgattggcaatggagctg 117  Q
    |||| |||||| ||||||||| ||||||| ||||| || | ||| ||||||||| |||||||||| ||| || ||||||| ||||| || ||||  |||     
T  34465240 cacagtagagtagagattattgacaatgaccaaggtaacacaaccacaccttcttttgttgcttttactcatgatcaaagattgatcggtaatgctgcta 34465339  T
Q  118 agaatcaatctgctaccaaccccgaaaacactgtatttggtaa 160  Q
    |||||||| |||||||||||||  | |||||||| ||||||||    
T  34465340 agaatcaaactgctaccaacccacagaacactgtttttggtaa 34465382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 9323039 - 9323227
Alignment:
Q  1 ctgtgtggcttgacgatcacaatagagttgagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggtt 100  Q
    |||||||||||||  | ||| | ||||||||||||||||||||||||||||| ||  |||| ||||||||| ||||||||||||   || | ||||||||    
T  9323039 ctgtgtggcttgatcaacaccaaagagttgagattattcacaatgatcaaggaaaccgaacaacaccttcttttgttgctttcaacaatgagcaaaggtt 9323138  T
Q  101 gattggcaatggagctgagaatcaatctgctaccaaccccgaaaacactgtatttggtaaatttctatttttattctctattacttcat 189  Q
    ||||||  |||  ||| |||||||||||||||| ||||| ||||||||| | |||||||||||||||||| |||| |||| | ||||||    
T  9323139 gattggtgatgctgctaagaatcaatctgctactaaccctgaaaacactatctttggtaaatttctatttctattatctactgcttcat 9323227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 9377518 - 9377706
Alignment:
Q  1 ctgtgtggcttgacgatcacaatagagttgagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggtt 100  Q
    |||||||||||||  | ||| | ||||||||||||||||||||||||||||| ||  |||| ||||||||| ||||||||||||   || | ||||||||    
T  9377518 ctgtgtggcttgatcaacaccaaagagttgagattattcacaatgatcaaggaaaccgaacaacaccttcttttgttgctttcaacaatgagcaaaggtt 9377617  T
Q  101 gattggcaatggagctgagaatcaatctgctaccaaccccgaaaacactgtatttggtaaatttctatttttattctctattacttcat 189  Q
    ||||||  |||  ||| |||||||||||||||| ||||| ||||||||| | |||||||||||||||||| |||| |||| | ||||||    
T  9377618 gattggtgatgctgctaagaatcaatctgctactaaccctgaaaacactatctttggtaaatttctatttctattatctactgcttcat 9377706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 9335011 - 9335199
Alignment:
Q  1 ctgtgtggcttgacgatcacaatagagttgagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggtt 100  Q
    |||||||||||||  | ||| | ||||||||||||||||||||||||||||| ||  |||| ||||||||| ||||||||||||   || | ||||||||    
T  9335011 ctgtgtggcttgatcaacaccaaagagttgagattattcacaatgatcaaggaaaccgaacaacaccttcttttgttgctttcaacaatgagcaaaggtt 9335110  T
Q  101 gattggcaatggagctgagaatcaatctgctaccaaccccgaaaacactgtatttggtaaatttctatttttattctctattacttcatg 190  Q
    || |||  |||  ||| |||||||||||||||| ||||| ||||||||| | |||||||||||||||||| |||| |||| | |||||||    
T  9335111 ga-tggtgatgctgctaagaatcaatctgctactaaccctgaaaacactatctttggtaaatttctatttctattatctactgcttcatg 9335199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 178
Target Start/End: Complemental strand, 30776221 - 30776067
Alignment:
Q  24 agagttgagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgattggcaatggagctgagaatc 123  Q
    |||||||| ||||| ||||| ||| ||||||  | ||  ||||||||| |||||||||||||||||  |||||||||| | ||   ||  ||| || | |    
T  30776221 agagttgaaattatccacaacgatgaaggcagcaaaatcacaccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaaggacc 30776122  T
Q  124 aatctgctaccaaccccgaaaacactgtatttggtaaatttctatttttattctc 178  Q
    |  |||||| ||||||  |||||||||| |||||||||||||||||  |||||||    
T  30776121 aggctgctatcaaccctcaaaacactgtctttggtaaatttctattgctattctc 30776067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 160
Target Start/End: Complemental strand, 35133546 - 35133422
Alignment:
Q  36 attcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgattggcaatggagctgagaatcaatctgctacca 135  Q
    |||||||| |||||| |||| | ||| |||||||||  | ||||||||||| |  ||||||||||||| ||  |||  ||| |||||||| ||||| |||    
T  35133546 attcacaacgatcaaagcaacaaaacaacaccttcttgtattgctttcactaaggatcaaaggttgatcggtgatgctgctaagaatcaagctgctgcca 35133447  T
Q  136 accccgaaaacactgtatttggtaa 160  Q
    |    ||||||||||||||||||||    
T  35133446 attttgaaaacactgtatttggtaa 35133422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 89
Target Start/End: Original strand, 23586538 - 23586585
Alignment:
Q  42 aatgatcaaggcaatagaactacaccttctgttgttgctttcactgat 89  Q
    |||||||| || ||||||||||||||||||  ||||||||||||||||    
T  23586538 aatgatcagggtaatagaactacaccttcttatgttgctttcactgat 23586585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 89
Target Start/End: Original strand, 23595371 - 23595418
Alignment:
Q  42 aatgatcaaggcaatagaactacaccttctgttgttgctttcactgat 89  Q
    |||||||| || ||||||||||||||||||  ||||||||||||||||    
T  23595371 aatgatcagggtaatagaactacaccttcttatgttgctttcactgat 23595418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 28221074 - 28220900
Alignment:
Q  1 ctgtgtggcttgacgatcacaatagagttgagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggtt 100  Q
    |||||||||  || || |||||||| ||||||||||||||||||||||||||||| | ||| || |||||| ||||||||||||| ||| || |||||||    
T  28221074 ctgtgtggcaagatgaacacaatagggttgagattattcacaatgatcaaggcaacaaaacaactccttcttttgttgctttcaccgatgatgaaaggtt 28220975  T
Q  101 gattggcaatggagctgagaatcaatctgctaccaaccccgaaaacactgtatttggtaaatttctatttttatt 175  Q
    ||||||| |||  ||| | |||||| | || | ||||||| |||| || || ||||||||||||||||| |||||    
T  28220974 gattggcgatgctgctaaaaatcaaacggccaacaacccccaaaataccgtctttggtaaatttctattattatt 28220900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 21 - 167
Target Start/End: Original strand, 42554182 - 42554328
Alignment:
Q  21 aatagagttgagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgattggcaatggagctgaga 120  Q
    ||||||||||||||||||||||||||||||||||| | ||| ||||||||| |||||||||| ||| || || |||||||||||||  |||  ||| ||     
T  42554182 aatagagttgagattattcacaatgatcaaggcaacaaaacaacaccttcttttgttgcttttactcatcatgaaaggttgattggtgatgctgctaagg 42554281  T
Q  121 atcaatctgctaccaaccccgaaaacactgtatttggtaaatttcta 167  Q
    ||||| | || ||||||||| |||||||||| ||||||| |||||||    
T  42554282 atcaaaccgccaccaacccccaaaacactgtctttggtacatttcta 42554328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 25 - 169
Target Start/End: Complemental strand, 12235901 - 12235758
Alignment:
Q  25 gagttgagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgattggcaatggagctgagaatca 124  Q
    |||||||||| |||||||| ||||||||||||||||| || |||||| ||||||||||||| ||  |||| |||||||||||  |||  ||| |||||||    
T  12235901 gagttgagatcattcacaacgatcaaggcaatagaacaaccccttcttttgttgctttcaccgaaaatcagaggttgattggtgatgctgctaagaatca 12235802  T
Q  125 atctgctaccaaccccgaaaacactgtatttggtaaatttctatt 169  Q
    | ||||| |||||||  ||||||| || |||||| ||||||||||    
T  12235801 agctgcttccaacccgcaaaacaccgtctttggt-aatttctatt 12235758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 43626447 - 43626282
Alignment:
Q  1 ctgtgtggcttgacgatcacaatagagttgagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggtt 100  Q
    ||||||||||||| ||  |||  ||||| |||||||| |||||||| ||||| || ||||||||||||||| ||||| |||||||| |  | ||||||||    
T  43626447 ctgtgtggcttgatgaaaacagaagagtagagattatccacaatgaccaaggaaacagaactacaccttcttttgtttctttcactaaggaccaaaggtt 43626348  T
Q  101 gattggcaatggagctgagaatcaatctgctaccaaccccgaaaacactgtatttggtaaatttct 166  Q
    ||||||  |||  ||| ||  |||| || |  || |||||||||||||||| ||||||||||||||    
T  43626347 gattggtgatgctgctaagggtcaagctacctccgaccccgaaaacactgtctttggtaaatttct 43626282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 159
Target Start/End: Complemental strand, 14705566 - 14705432
Alignment:
Q  25 gagttgagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgattggcaatggagctgagaatca 124  Q
    ||||||| || |||||||| ||||||||||||||||| || |||||| ||||||||||||| ||  ||||  ||||||||||  |||  ||| |||||||    
T  14705566 gagttgaaatcattcacaacgatcaaggcaatagaacaactccttcttttgttgctttcaccgaaaatcagcggttgattggtgatgctgctaagaatca 14705467  T
Q  125 atctgctaccaaccccgaaaacactgtatttggta 159  Q
    | ||||| |||||||   ||||||||| |||||||    
T  14705466 agctgctgccaaccctcgaaacactgtctttggta 14705432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 25 - 160
Target Start/End: Complemental strand, 7543380 - 7543245
Alignment:
Q  25 gagttgagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgattggcaatggagctgagaatca 124  Q
    ||||||| || |||||||| || |||||||| ||||| ||||||||| ||||||||||||| ||  |||| |||||||| ||  ||   ||| |||||||    
T  7543380 gagttgaaatcattcacaacgaccaaggcaacagaacaacaccttcttttgttgctttcaccgaaaatcagaggttgatcggtgataatgctaagaatca 7543281  T
Q  125 atctgctaccaaccccgaaaacactgtatttggtaa 160  Q
    | ||||| |||||||  |||||||||| ||||||||    
T  7543280 agctgcttccaaccctcaaaacactgtctttggtaa 7543245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 162
Target Start/End: Original strand, 12244404 - 12244539
Alignment:
Q  27 gttgagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgattggcaatggagctgagaatcaat 126  Q
    ||||| || |||||||| ||||| ||||| ||||| |||||||||  |||||||||||||||  |||||||||| |||||  |||  ||| | ||||||     
T  12244404 gttgaaatcattcacaacgatcagggcaacagaacaacaccttcttgtgttgctttcactgaagatcaaaggtttattggtgatgctgctaaaaatcaag 12244503  T
Q  127 ctgctaccaaccccgaaaacactgtatttggtaaat 162  Q
    ||||| | ||| |  |||||||||| ||||||||||    
T  12244504 ctgctgctaactctcaaaacactgtctttggtaaat 12244539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 29 - 159
Target Start/End: Original strand, 12257917 - 12258047
Alignment:
Q  29 tgagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgattggcaatggagctgagaatcaatct 128  Q
    |||||| |||||||| |||||||| || ||||| || ||||||  ||||||||| ||| |  ||||||||||||||||  |||  ||| |||||||| ||    
T  12257917 tgagatcattcacaacgatcaaggaaacagaacaacgccttcttgtgttgcttttactaaagatcaaaggttgattggtgatgctgctaagaatcaagct 12258016  T
Q  129 gctaccaaccccgaaaacactgtatttggta 159  Q
    ||| |||||||  || ||||||| |||||||    
T  12258017 gctgccaaccctcaacacactgtctttggta 12258047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 16661064 - 16661141
Alignment:
Q  24 agagttgagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttg 101  Q
    |||||||||||||| ||||| ||| ||||||| | || |||||||||| |||||||||| ||||||  ||||||||||    
T  16661064 agagttgagattatccacaacgatgaaggcaacaaaattacaccttcttttgttgcttttactgatgctcaaaggttg 16661141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 16656591 - 16656677
Alignment:
Q  17 tcacaatagagttgagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgat 103  Q
    |||||| ||||  ||||| || |||||||| || || || ||||| ||||||||| |||||||||||||| || |||||||||||||    
T  16656591 tcacaacagagcagagatcatacacaatgaccagggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgat 16656677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 100
Target Start/End: Complemental strand, 12000436 - 12000361
Alignment:
Q  25 gagttgagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggtt 100  Q
    ||||||| || |||||||| ||||||||||| | ||  |||||||||  |||||||||||||||  ||||||||||    
T  12000436 gagttgaaatcattcacaacgatcaaggcaacaaaataacaccttcttgtgttgctttcactgaaaatcaaaggtt 12000361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 2 - 171
Target Start/End: Complemental strand, 28911432 - 28911271
Alignment:
Q  2 tgtgtggcttgacgatcacaatagagttgagattattcacaatgatcaaggcaatagaa-ctacaccttctgttgttgctttcactgattatcaaaggtt 100  Q
    |||||||||||| || |||||| ||||| | ||||||||||||||||||||||| | || |||||||||||         ||||| ||| ||||||||||    
T  28911432 tgtgtggcttgatgaacacaatggagttaatattattcacaatgatcaaggcaacaaaaactacaccttct---------ttcaccgatgatcaaaggtt 28911342  T
Q  101 gattggcaatggagctgagaatcaatctgctaccaaccccgaaaacactgtatttggtaaatttctatttt 171  Q
    ||||||  |||  ||| |||||||  |||| |||||||||||||||||||| || |||| |||||||||||    
T  28911341 gattggtgatgctgctaagaatcaggctgccaccaaccccgaaaacactgttttaggtatatttctatttt 28911271  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 103
Target Start/End: Complemental strand, 43745928 - 43745849
Alignment:
Q  21 aatagagttgagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgat 103  Q
    ||||||||||||||||||||||||||||||||||| | |   ||| ||||| |||||||||| |||||| || ||||||||||    
T  43745928 aatagagttgagattattcacaatgatcaaggcaacaaa---acaacttcttttgttgcttttactgatcatgaaaggttgat 43745849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 43431099 - 43431054
Alignment:
Q  21 aatagagttgagattattcacaatgatcaaggcaatagaactacac 66  Q
    ||||||||| ||||| ||||||||||||||||||||| ||| ||||    
T  43431099 aatagagttcagatttttcacaatgatcaaggcaataaaacaacac 43431054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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