View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20591_high_4 (Length: 440)
Name: NF20591_high_4
Description: NF20591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20591_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 18 - 428
Target Start/End: Complemental strand, 13924229 - 13923819
Alignment:
| Q |
18 |
gatggttagtggatatattaagataaatagaattgaggaagctgagagattgtttaatgagatgccagttaggaatgttgtgtcgtggaatacgatgatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13924229 |
gatggttagtggatatattaagataaatagaattgaggaagctgagagattgtttaatgagatgccagttaggaatgttgtgtcgtggaatacgatgatt |
13924130 |
T |
|
| Q |
118 |
gatgggtatgcgaggaatggaaggacgcaggaggctatggatttgtttggtagaatgccggagaggaatgtggtttcttggaatacggttatgacggctt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13924129 |
gatgggtatgcgaggaatggaaggacgcaggaggctatggatttgtttggtagaatgccggagaggaatgtggtttcttggaatacggttatgacggctt |
13924030 |
T |
|
| Q |
218 |
tggcgcattgtgggagaattgatgatgcggagaggctttttaatgagatgcgggaaagggatgtggtttcgtggactactatggttgcgggtttgtcgaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13924029 |
tggcgcattgtgggagaattgatgatgcggagaggctttttaatgagatgcgggaaagggatgtggtttcgtggactactatggttgcgggtttgtcgaa |
13923930 |
T |
|
| Q |
318 |
aaacgggagagttgatgacgcgagagatgtttttgataggatgccgattcgtaatgtggtttcttggaatgcgatgattgcaggttatgcgcagaatgga |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
13923929 |
aaacgggagagttgatgacgcgagagatgtttttgataggatgccgattcgtaatgtggtttcatggaatgcgatgattgcaggttatgcgcagaatgga |
13923830 |
T |
|
| Q |
418 |
aggtttgatga |
428 |
Q |
| |
|
||||||||||| |
|
|
| T |
13923829 |
aggtttgatga |
13923819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 18 - 428
Target Start/End: Original strand, 14313487 - 14313897
Alignment:
| Q |
18 |
gatggttagtggatatattaagataaatagaattgaggaagctgagagattgtttaatgagatgccagttaggaatgttgtgtcgtggaatacgatgatt |
117 |
Q |
| |
|
|||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14313487 |
gatggttagtgggtatattaagatgaatcgaattgaggaagctgagagattgtttaatgagatgccagttaggaatgttgtgtcgtggaatacgatgatt |
14313586 |
T |
|
| Q |
118 |
gatgggtatgcgaggaatggaaggacgcaggaggctatggatttgtttggtagaatgccggagaggaatgtggtttcttggaatacggttatgacggctt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14313587 |
gatgggtatgcgaggaatggaaggacgcaggaggctttggatttgtttggtagaatgccggagaggaatgtggtttcttggaatacggttatgacggctt |
14313686 |
T |
|
| Q |
218 |
tggcgcattgtgggagaattgatgatgcggagaggctttttaatgagatgcgggaaagggatgtggtttcgtggactactatggttgcgggtttgtcgaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14313687 |
tggcgcattgtgggagaattgatgatgcggagaggctttttaatgagatgcgggaaagggatgtggtttcgtggactactatggttgcaggtttgtcgaa |
14313786 |
T |
|
| Q |
318 |
aaacgggagagttgatgacgcgagagatgtttttgataggatgccgattcgtaatgtggtttcttggaatgcgatgattgcaggttatgcgcagaatgga |
417 |
Q |
| |
|
|||||| |||||||||| ||||| || |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
14313787 |
aaacggaagagttgatgctgcgagggaagtttttgataagatgccgattcgtaatgtggtttcgtggaatgcgatgattgcaggttatgcgcagaatgga |
14313886 |
T |
|
| Q |
418 |
aggtttgatga |
428 |
Q |
| |
|
||||||||||| |
|
|
| T |
14313887 |
aggtttgatga |
14313897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 400
Target Start/End: Original strand, 9143824 - 9143854
Alignment:
| Q |
370 |
aatgtggtttcttggaatgcgatgattgcag |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
9143824 |
aatgtggtttcttggaatgcgatgattgcag |
9143854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 3128669 - 3128715
Alignment:
| Q |
161 |
tgtttggtagaatgccggagaggaatgtggtttcttggaatacggtt |
207 |
Q |
| |
|
|||||| |||||||||||||||| || |||||| ||||||||||||| |
|
|
| T |
3128669 |
tgtttgttagaatgccggagagggatttggtttgttggaatacggtt |
3128715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 30002909 - 30002947
Alignment:
| Q |
161 |
tgtttggtagaatgccggagaggaatgtggtttcttgga |
199 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
30002909 |
tgtttgatagaatgccggagagaaatgtggtttcttgga |
30002947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 2849230 - 2849270
Alignment:
| Q |
161 |
tgtttggtagaatgccggagaggaatgtggtttcttggaat |
201 |
Q |
| |
|
|||||||||||||||| ||||||||| || ||||||||||| |
|
|
| T |
2849230 |
tgtttggtagaatgcctgagaggaatttgttttcttggaat |
2849270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University