View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20591_low_1 (Length: 854)
Name: NF20591_low_1
Description: NF20591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20591_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 4539887 - 4540129
Alignment:
| Q |
18 |
attataagctcaagctgtatgtatagcctcatttgctcaattctccaaatatccaaccaacactaaactgaccccatctattgtattatttgtcggtcgt |
117 |
Q |
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| T |
4539887 |
attataagctcaagctgtatgtatagcctcatttgctcaattctccaaatatccaaccaacactaaactgaccccatctattgtattatttgtcggtcgt |
4539986 |
T |
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| Q |
118 |
gatttccacacataaaaacttttccttttgtgattggttaggtactgacaaaattttattttctatcaattaattttgattataaagaagtcaaatataa |
217 |
Q |
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| T |
4539987 |
gatttccacacataaaaacttttccttttgtgaatggttaggtactgacaaaattttattttctatcaattaattttgatcataaagaagtcaaatataa |
4540086 |
T |
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| Q |
218 |
attgatttatatttcgatacaattatgtgtaagcgtatgtttg |
260 |
Q |
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| T |
4540087 |
attgatttatatttcgatacaattatgtgcaagcgtatgtttg |
4540129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 617 - 840
Target Start/End: Original strand, 4540708 - 4540931
Alignment:
| Q |
617 |
cttctcatattttggctctacccttcacttcttcaggaccttctctctggtatgtaattgtcaaactcctagatgcatttttgtttctttttgcttcatt |
716 |
Q |
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| T |
4540708 |
cttctcatattttggctctacccttcacttcttcaggaccttctctctggtatgtaattgtcaaactcctagatgcatttttgtttctttttgcttcatt |
4540807 |
T |
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| Q |
717 |
ttggagtgacacacacttgcttctagatttttggttggtgtcagaatttcatggattttgtttctcactatcttgctctatttgctacttgcaaattgag |
816 |
Q |
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| T |
4540808 |
ttggagtgacacatacttgcttctagattttgggttggtgtcagaatttaatggattttgtttctcactatcttgctctatttgctacttgcaaattgag |
4540907 |
T |
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| Q |
817 |
catacttatttgttgttatctgtg |
840 |
Q |
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| T |
4540908 |
catacttatttgttgttatctgtg |
4540931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 320 - 522
Target Start/End: Original strand, 4540414 - 4540614
Alignment:
| Q |
320 |
caattatgagacataatcaattctactttgagattaatcaaacatgtttaaactagtgttacacctttaaaataaaatcaaagctacatttattggaaaa |
419 |
Q |
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| T |
4540414 |
caattatgagacagaatcaattctactt-gagattaatgaaacatgtttaaattagtgttacacctttaaaataaaatgaaagatacatttattggaaaa |
4540512 |
T |
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| Q |
420 |
ttagaattgtttaattgtttttctttgtcactcaccttctgcattaatatatgagagaaataaagctggtaatgggccatggcaatccacattccccacc |
519 |
Q |
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| T |
4540513 |
ttggaattgtttaattgtttttctt-gtcactcaccttctgcattaatatatgagagaaataaagctggtaatgggccatggcaatccacattccccacc |
4540611 |
T |
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| Q |
520 |
cac |
522 |
Q |
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||| |
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| T |
4540612 |
cac |
4540614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 4540342 - 4540383
Alignment:
| Q |
262 |
atccaacttctccacctttaaaacgtgtgaactctatacatt |
303 |
Q |
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| T |
4540342 |
atccgacttctccacctttaaaacgagtgaactccatacatt |
4540383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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