View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20591_low_3 (Length: 523)
Name: NF20591_low_3
Description: NF20591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20591_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 475; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Original strand, 40763897 - 40764395
Alignment:
| Q |
1 |
ttcaggagaagggggaggttgtttcacaattaaaaactgcagaagcagaaaggttggagaaggaacagatacagaatcctcctcctactgaatctaatgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40763897 |
ttcaggagaagggggaggttgtttcacaattaaaaactgcagaagcagaaaggttggagaaggaacagatacagaatcctcctcctactgaatctgatgt |
40763996 |
T |
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| Q |
101 |
tgaagctgctaagcttgttgctcaggagaaggagaaggagattactgctgctgtggatgaacttaaaaaggctaaacggaatgtatccaagctggaagaa |
200 |
Q |
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| T |
40763997 |
tgaagctgctaagcttgttgctcaggagaaggagaaggagattactgctgctgtggatgaacttaaaaaagctaaacggaatgtatccaagctggaagaa |
40764096 |
T |
|
| Q |
201 |
agatctaaacttcagcccggtattcctcgaaaagatggaaaggtagattatgctaaagatttctttgcccgtcaagcatttttgactgtttctggtcagc |
300 |
Q |
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| T |
40764097 |
agatctaaacttcagcccagtattcctcgaaaggatggaaagatagattatgctaaagatttctttgcccgtcaagcatttttgactgtttctggtcagc |
40764196 |
T |
|
| Q |
301 |
ttcaagttgagtcttatgcgtgtgctcttagtagtgtgtatacatttggcccaacatttcgtgcagagaattctcacacttccaggcatttggctgaatt |
400 |
Q |
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| T |
40764197 |
ttcaagttgagtcttatgcgtgtgctcttagtagtgtgtatacatttggcccaacatttcgtgcagagaattctcacacttccaggcatttggctgaatt |
40764296 |
T |
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| Q |
401 |
ttggatggtagaacctgaaattgcgtttgcagacttggaggtatataaaaaggaacacactatctggttatgattattctcatctatagctgtttgaag |
499 |
Q |
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| T |
40764297 |
ttggatggtagaacctgaaattgcgtttgcagacttggaggtatataaaaaggaacacactatctggttatgattattctcatcgatagctgtttgaag |
40764395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 42 - 132
Target Start/End: Original strand, 40763818 - 40763908
Alignment:
| Q |
42 |
gaagcagaaaggttggagaaggaacagatacagaatcctcctcctactgaatctaatgttgaagctgctaagcttgttgctcaggagaagg |
132 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
40763818 |
gaagcagagaggttggagaaggaactgatacagaatcctcctcctactgaatctgatgttgaagctgctaagcttgttgttcaggagaagg |
40763908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 133 - 482
Target Start/End: Original strand, 42911676 - 42912029
Alignment:
| Q |
133 |
agaaggagattactgctgctgtggatgaacttaaaaaggctaaacggaatgtatccaagctggaagaaagatctaaacttcagcccggtattcctcgaaa |
232 |
Q |
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| T |
42911676 |
agaaggagattagtgctgctgtggctgaacttaaaaaagcaaaagaaaatgtatccaagctggaggaaagatctaaacttcagcccggtattcctcgaaa |
42911775 |
T |
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| Q |
233 |
agatggaaaggtagattatgctaaagatttctttgcccgtcaagcatttttgactgtttctggtcagcttcaagttgagtcttatgcgtgtgctcttagt |
332 |
Q |
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| T |
42911776 |
ggacggaaaggtggattatactaaagatttctttgcccgtcaagcgtttttgactgtttctggtcagcttcaagttgagtcttatgcttgtgctcttagt |
42911875 |
T |
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| Q |
333 |
agtgtgtatacatttggcccaacatttcgtgcagagaattctcacacttccaggcatttggctgaattttggatggtagaacctgaaattgcgtttgcag |
432 |
Q |
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| T |
42911876 |
cgcgtgtatacatttggcccgacatttcgtgcagagaattctcacacttccaggcatttggctgaattttggatggtagaacctgaaattgcgtttgcag |
42911975 |
T |
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| Q |
433 |
acttggaggtatataaaaaggaacacact----atctggttatgattattctca |
482 |
Q |
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| T |
42911976 |
acttggaggtatataaaaatgaacacacactcaatcttgttatgattattctca |
42912029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 42 - 132
Target Start/End: Original strand, 42911546 - 42911636
Alignment:
| Q |
42 |
gaagcagaaaggttggagaaggaacagatacagaatcctcctcctactgaatctaatgttgaagctgctaagcttgttgctcaggagaagg |
132 |
Q |
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| T |
42911546 |
gaagcagagaggttggagaaggaactgatacagaatcctcctccaactgaagctgatgttgaagctgctaagcttgttgttcaggagaagg |
42911636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 42911625 - 42911673
Alignment:
| Q |
1 |
ttcaggagaagggggaggttgtttcacaattaaaaactgcagaagcaga |
49 |
Q |
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| T |
42911625 |
ttcaggagaagggggaggttgtttcacaattgaaatctgcaaaagcaga |
42911673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 336 - 404
Target Start/End: Complemental strand, 41661999 - 41661931
Alignment:
| Q |
336 |
gtgtatacatttggcccaacatttcgtgcagagaattctcacacttccaggcatttggctgaattttgg |
404 |
Q |
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| T |
41661999 |
gtgtatacatttggtcccacatttcgagcagagaattctaacacttccaggcacttggctgaattttgg |
41661931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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