View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20591_low_8 (Length: 301)
Name: NF20591_low_8
Description: NF20591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20591_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 4143878 - 4144107
Alignment:
| Q |
1 |
gcatggcaccgtcaacgtagttcattacacactgtattgggcccgataataatgggcccatcttaatataagaggaaaagatgaggattgttatttgcac |
100 |
Q |
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| T |
4143878 |
gcatggcaccgtcaacgtagttcattacacactgtattgggcccgataataatgggcccatcttaatataagaggaaaagatgaggattgttatttgcac |
4143977 |
T |
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| Q |
101 |
ccctctaatttacttctaacgcacctgtataagaaggggaaaaaagctcatgggctttgagcccaagcccgcccgcaaaaaacatacctatttataggta |
200 |
Q |
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| T |
4143978 |
ccctctaatttacttctaacgcacctgtataagaaggggaaaaaagctcatgggctttgagcccaagcccacccgcaaaaaacatacctatttataggta |
4144077 |
T |
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| Q |
201 |
tgttaagctttcctttcctttaactctcga |
230 |
Q |
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||||||| |||||||||||||||||||||| |
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| T |
4144078 |
tgttaagttttcctttcctttaactctcga |
4144107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 301
Target Start/End: Original strand, 4144151 - 4144181
Alignment:
| Q |
271 |
cttcttcttctagttgttgtatgcgaattgc |
301 |
Q |
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| T |
4144151 |
cttcttcttctagttgttgtatgcgaattgc |
4144181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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