View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20591_low_9 (Length: 274)

Name: NF20591_low_9
Description: NF20591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20591_low_9
NF20591_low_9
[»] chr1 (4 HSPs)
chr1 (20-258)||(44612892-44613130)
chr1 (57-248)||(35899515-35899706)
chr1 (20-129)||(11544204-11544313)
chr1 (77-111)||(44145659-44145693)
[»] scaffold0061 (1 HSPs)
scaffold0061 (20-263)||(28850-29093)
[»] scaffold0017 (3 HSPs)
scaffold0017 (20-263)||(169699-169942)
scaffold0017 (56-164)||(174641-174749)
scaffold0017 (200-255)||(180969-181024)
[»] chr3 (3 HSPs)
chr3 (20-257)||(26728438-26728675)
chr3 (56-183)||(8342956-8343083)
chr3 (25-104)||(8342778-8342857)
[»] chr5 (1 HSPs)
chr5 (32-256)||(29507168-29507392)


Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 258
Target Start/End: Original strand, 44612892 - 44613130
Alignment:
Q  20 gatcacttacagagttagagcaattgtacctgggcggaaactcttttgaaggtatcatctctgaatcccatttcactaagctctccaaattggaaaatct 119  Q
    |||||||||| |||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  44612892 gatcacttaccgagttacagtatttgtacctgggcggaaactcttttgaaggtatcatctctgaatcccatttcactaacctctccaaattggaaaaact 44612991  T
Q  120 agacttgtcttacaactcgttgactatgaaggttagtaatgattgggttccaccttttcaattatcaacattggccttatcatcttgtaatctgaattct 219  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||| ||||||||    
T  44612992 agacttgtctgacaactcgttgactatgaaggttagtaatgattgggttcccccttttcaattattaacattgggcttatcatcttgtaatatgaattct 44613091  T
Q  220 agatttcctaattggcttcaaacacaaaatcacttatcc 258  Q
    |||||||||||||||||||||||||||||| | ||||||    
T  44613092 agatttcctaattggcttcaaacacaaaatgaattatcc 44613130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 57 - 248
Target Start/End: Original strand, 35899515 - 35899706
Alignment:
Q  57 aaactcttttgaaggtatcatctctgaatcccatttcactaagctctccaaattggaaaatctagacttgtcttacaactcgttgactatgaaggttagt 156  Q
    |||| ||||||||||| ||||||||||||| ||||||||||| ||||||||||||||| ||||| | |||||||| ||||   ||||| |||||||||||    
T  35899515 aaacgcttttgaaggtgtcatctctgaatctcatttcactaacctctccaaattggaagatctatatttgtcttataactttctgactgtgaaggttagt 35899614  T
Q  157 aatgattgggttccaccttttcaattatcaacattggccttatcatcttgtaatctgaattctagatttcctaattggcttcaaacacaaaa 248  Q
     |||| |||||||| || ||| |||||  ||  |||    || ||||||| ||||| |||| |||||||||||| |||||||||||||||||    
T  35899615 tatgactgggttcctccctttaaattaataaatttgaatctagcatcttgcaatctaaattatagatttcctaactggcttcaaacacaaaa 35899706  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 11544313 - 11544204
Alignment:
Q  20 gatcacttacagagttagagcaattgtacctgggcggaaactcttttgaaggtatcatctctgaatcccatttcactaagctctccaaattggaaaatct 119  Q
    |||||||||| ||||||||    ||| | ||||||||||||||||||||||| ||  |||||||||||||||||||||| ||||||||||||||| | ||    
T  11544313 gatcacttaccgagttagaaattttgaatctgggcggaaactcttttgaaggcattgtctctgaatcccatttcactaacctctccaaattggaagaact 11544214  T
Q  120 agacttgtct 129  Q
    ||| ||||||    
T  11544213 agatttgtct 11544204  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 111
Target Start/End: Original strand, 44145659 - 44145693
Alignment:
Q  77 tctctgaatcccatttcactaagctctccaaattg 111  Q
    |||||||||||||||||||||| ||||||||||||    
T  44145659 tctctgaatcccatttcactaacctctccaaattg 44145693  T

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Target: scaffold0061 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 20 - 263
Target Start/End: Complemental strand, 29093 - 28850
Alignment:
Q  20 gatcacttacagagttagagcaattgtacctgggcggaaactcttttgaaggtatcatctctgaatcccatttcactaagctctccaaattggaaaatct 119  Q
    ||||||||||||||||| ||   ||||||||| || ||||||||||||||||| || |||||||||||||||||||||| |||||||||||| |||  ||    
T  29093 gatcacttacagagttaaagagtttgtacctgagccgaaactcttttgaaggtgtcgtctctgaatcccatttcactaacctctccaaattgaaaaggct 28994  T
Q  120 agacttgtcttacaactcgttgactatgaaggttagtaatgattgggttccaccttttcaattatcaacattggccttatcatcttgtaatctgaattct 219  Q
    |   |||||  ||||||| ||||||||| |||||||||||||||||||||| ||||||||||||  |  |||||  ||||||  ||||||| ||||||||    
T  28993 atggttgtccgacaactcattgactatggaggttagtaatgattgggttcctccttttcaattactagaattgggtttatcaaattgtaatatgaattct 28894  T
Q  220 agatttcctaattggcttcaaacacaaaatcacttatcctctct 263  Q
    | ||||||||||||||| |||||||||||| | |||||| ||||    
T  28893 atatttcctaattggctccaaacacaaaatgaattatccactct 28850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 20 - 263
Target Start/End: Original strand, 169699 - 169942
Alignment:
Q  20 gatcacttacagagttagagcaattgtacctgggcggaaactcttttgaaggtatcatctctgaatcccatttcactaagctctccaaattggaaaatct 119  Q
    ||||||||||||||||| ||   ||||||||| || ||||||||||||||||| || |||||||||||||||||||||| |||||||||||| |||  ||    
T  169699 gatcacttacagagttaaagagtttgtacctgagccgaaactcttttgaaggtgtcgtctctgaatcccatttcactaacctctccaaattgaaaaggct 169798  T
Q  120 agacttgtcttacaactcgttgactatgaaggttagtaatgattgggttccaccttttcaattatcaacattggccttatcatcttgtaatctgaattct 219  Q
    |   |||||  ||||||| ||||||||| |||||||||||||||||||||| ||||||||||||  |  |||||  ||||||  ||||||| ||||||||    
T  169799 atggttgtccgacaactcattgactatggaggttagtaatgattgggttcctccttttcaattactagaattgggtttatcaaattgtaatatgaattct 169898  T
Q  220 agatttcctaattggcttcaaacacaaaatcacttatcctctct 263  Q
    | ||||||||||||||| |||||||||||| | |||||| ||||    
T  169899 atatttcctaattggctccaaacacaaaatgaattatccactct 169942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 56 - 164
Target Start/End: Original strand, 174641 - 174749
Alignment:
Q  56 gaaactcttttgaaggtatcatctctgaatcccatttcactaagctctccaaattggaaaatctagacttgtcttacaactcgttgactatgaaggttag 155  Q
    ||||||||||||||||| |  |||||||||| ||||||||||| ||||||||||||| |   |||||||||||||||||| |||||||| ||||| ||||    
T  174641 gaaactcttttgaaggtgttgtctctgaatcgcatttcactaacctctccaaattggtagccctagacttgtcttacaacccgttgactgtgaagcttag 174740  T
Q  156 taatgattg 164  Q
    | |||||||    
T  174741 tgatgattg 174749  T

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Target: scaffold0017; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 180969 - 181024
Alignment:
Q  200 catcttgtaatctgaattctagatttcctaattggcttcaaacacaaaatcactta 255  Q
    ||||||||||||||||||||||||||||| ||||| || |||||||||||||||||    
T  180969 catcttgtaatctgaattctagatttcctgattggtttaaaacacaaaatcactta 181024  T

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Target: chr3 (Bit Score: 67; Significance: 8e-30; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 20 - 257
Target Start/End: Original strand, 26728438 - 26728675
Alignment:
Q  20 gatcacttacagagttagagcaattgtacctgggcggaaactcttttgaaggtatcatctctgaatcccatttcactaagctctccaaattggaaaatct 119  Q
    |||||||||| || ||||||   ||| ||||||| | |||||||||||||||| || |||||||||||||||||||||| |||||  |||||| | | ||    
T  26728438 gatcacttacggatttagagattttggacctgggagtaaactcttttgaaggtgtcgtctctgaatcccatttcactaacctctcagaattggtagacct 26728537  T
Q  120 agacttgtcttacaactcgttgactatgaaggttagtaatgattgggttccaccttttcaattatcaacattggcct-tatcatcttgtaatctgaattc 218  Q
    ||| ||||||||||| | ||||| | ||||| ||||| || |||||||||| || |||||||||     ||| || | || | ||||| || ||||||||    
T  26728538 agatttgtcttacaatttgttgaatgtgaagattagtgataattgggttcctccgtttcaatta-agttatttgcgtctaacgtcttgcaacctgaattc 26728636  T
Q  219 tagatttcctaattggcttcaaacacaaaatcacttatc 257  Q
    |||||||||||||||||| |||||||||||  |||||||    
T  26728637 tagatttcctaattggctccaaacacaaaacgacttatc 26728675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 183
Target Start/End: Original strand, 8342956 - 8343083
Alignment:
Q  56 gaaactcttttgaaggtatcatctctgaatcccatttcactaagctctccaaattggaaaatctagacttgtcttacaactcgttgactatgaaggttag 155  Q
    ||||||||||||| ||| || |||||||||| |||||||| || ||||| |||||| || | ||| | |||||| | ||||  |||  | ||||||||||    
T  8342956 gaaactcttttgatggtgtcgtctctgaatctcatttcacaaacctctcaaaattgaaagaactacagttgtctgataacttattgtttgtgaaggttag 8343055  T
Q  156 taatgattgggttccaccttttcaatta 183  Q
    || | |||||||||| ||||||||||||    
T  8343056 tactaattgggttcctccttttcaatta 8343083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 8342778 - 8342857
Alignment:
Q  25 cttacagagttagagcaattgtacctgggcggaaactcttttgaaggtatcatctctgaatcccatttcactaagctctc 104  Q
    |||||||||||||||   |||  |||| || |||||||||||||||| | | |||||||||||||||||||||| |||||    
T  8342778 cttacagagttagaggttttgagcctgcgcagaaactcttttgaaggcaccctctctgaatcccatttcactaacctctc 8342857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 256
Target Start/End: Complemental strand, 29507392 - 29507168
Alignment:
Q  32 agttagagcaattgtacctgggcggaaactcttttgaaggtatcatctctgaatcccatttcactaagctctccaaattggaaaatctagacttgtctta 131  Q
    |||||||| | |||||||| ||| | ||||||||  ||||| || |||||||||| |||||||||||  ||||||||||   |   ||| | |||||||     
T  29507392 agttagagtatttgtacctaggcagcaactctttcaaaggtgtcctctctgaatctcatttcactaacttctccaaattactaggcctacagttgtcttc 29507293  T
Q  132 caactcgttgactatgaaggttagtaatgattgggttccaccttttcaattatcaacattggccttatcatcttgtaatctgaattctagatttcctaat 231  Q
     |||  ||||||| |||||||||||| |||||||||||| ||||||||||||  |   |||    || ||||||||||||| || ||||  |||||||||    
T  29507292 taacctgttgactgtgaaggttagtactgattgggttccgccttttcaattaaaatatttgttactagcatcttgtaatctcaactctacctttcctaat 29507193  T
Q  232 tggcttcaaacacaaaatcacttat 256  Q
    |||||||  |  |||||||||||||    
T  29507192 tggcttcttaatcaaaatcacttat 29507168  T

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