View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20592_high_11 (Length: 294)
Name: NF20592_high_11
Description: NF20592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20592_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 142 - 278
Target Start/End: Complemental strand, 40285246 - 40285110
Alignment:
| Q |
142 |
gtagtatgtttcattctccaattcaatgtactttcagggtcacttgctggccatgacaagagaaatgtttattcttacaaaatagaatacatcaaaggaa |
241 |
Q |
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| T |
40285246 |
gtagtatatttcattctccaattcaatgtactttcagggtcacttgctggccatgacaagagaaatgtttattcttacaaaatagaatgcaacaaaggaa |
40285147 |
T |
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| Q |
242 |
caatgagcacatctctcctaaattcaaggataaagct |
278 |
Q |
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| T |
40285146 |
caatgagcacgtctctcctaaattcaaggataaagct |
40285110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 40289341 - 40289191
Alignment:
| Q |
1 |
aatttcgtttattcgaagaacaagaatgagaagaagcttatttttcaagatatagtactaat---aatatgtacacatgcg----cgagcgcacacacat |
93 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| || || ||||||||| |
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| T |
40289341 |
aatttcgtttattcgaagaacaagaatgagaagaagcttatttttcaagatatagtactaataataatacgtacacatgcgcgcacgcgcacacacacat |
40289242 |
T |
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| Q |
94 |
atataattacttaatgtgttgacataccaatgatgttcttggtattaagta |
144 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40289241 |
atataattacttaatgtgttgacataccaatgatgttcttggtattaagta |
40289191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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