View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20592_high_9 (Length: 342)
Name: NF20592_high_9
Description: NF20592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20592_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 337
Target Start/End: Complemental strand, 20899614 - 20899292
Alignment:
| Q |
18 |
ctaacaattaccacctactacttttaacatatgcaagatcatgcaaacgataccataacagctaaacaatccctgttattggcctaatatcaacaaaact |
117 |
Q |
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| T |
20899614 |
ctaacaattaccacctactacttttaacatatgcaagatcatgtaaacgataccataacagctaaacaatccctgttattggcctaatatcaacaaaact |
20899515 |
T |
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| Q |
118 |
ttgggtcatgtcctttgattaaactgcataataataaataaataacattctgaagaaaaggacggttcctattgcaaatggccaaaatacaaatggacaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20899514 |
ttgggtcatgtcctttgattaaactgcataataataaataaaaaacattctgaagaaaaggacggttcctattgcaaatggccaaaatacaaatggacaa |
20899415 |
T |
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| Q |
218 |
ccatatcaaagctgactcagtccccacagcacagaccatgtcctatagaatataattgtggggtcacagtttctgctgc---tgctacctttgtttcttg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||| || |
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| T |
20899414 |
ccatatcaaagctgactcagtccccacagcacagaccatgtcctatggaatataattgtggggtcacagttgctgctgctgctgctacctttgtttcatg |
20899315 |
T |
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| Q |
315 |
atagttacatttttcttctcact |
337 |
Q |
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||||||||||||||| ||||| |
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| T |
20899314 |
gaagttacatttttcttttcact |
20899292 |
T |
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