View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20592_low_13 (Length: 248)
Name: NF20592_low_13
Description: NF20592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20592_low_13 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 34387853 - 34387624
Alignment:
| Q |
19 |
gaaacctcatttcattttgctccttactggtataaaaccaattaaagaaactccaaacagtcaatttcacctcatacatgagctcatcatccttctcggg |
118 |
Q |
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| T |
34387853 |
gaaacctcatttcattttgctccttactggtatgaaaccaattaaagaaactccaaacagtcaatttcacctcatacatgagctcatcatccttctcggg |
34387754 |
T |
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| Q |
119 |
acaaacttcattgtcatcgtcgctctcaggaacttcatcaggcatacttttactctttttccattgtatagttgtagccttagtctctttaagttttcct |
218 |
Q |
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| T |
34387753 |
acaaacttcattgtcatcgtcgctctcaagaacttcatcaggcatacttttaccctttttccattgtatagttgtagccttagtctctttaagttttcct |
34387654 |
T |
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| Q |
219 |
tcatggaaggtaagagactttgcaaggctt |
248 |
Q |
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| T |
34387653 |
tcatggaaggtaagagactttgcaaggctt |
34387624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 21395949 - 21395994
Alignment:
| Q |
203 |
ctctttaagttttccttcatggaaggtaagagactttgcaaggctt |
248 |
Q |
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|||||| ||||||||||||||| |||||| ||||||||||| |||| |
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| T |
21395949 |
ctctttcagttttccttcatggtaggtaaaagactttgcaatgctt |
21395994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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