View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20592_low_14 (Length: 237)

Name: NF20592_low_14
Description: NF20592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20592_low_14
NF20592_low_14
[»] chr6 (11 HSPs)
chr6 (119-237)||(12949514-12949632)
chr6 (127-237)||(12958973-12959083)
chr6 (127-237)||(18555979-18556089)
chr6 (119-234)||(12908088-12908204)
chr6 (119-234)||(12933177-12933293)
chr6 (44-115)||(12933496-12933567)
chr6 (44-109)||(12908417-12908482)
chr6 (77-128)||(12900818-12900869)
chr6 (57-128)||(12959330-12959401)
chr6 (54-116)||(12949869-12949931)
chr6 (127-172)||(12900482-12900527)
[»] chr2 (2 HSPs)
chr2 (119-215)||(17922590-17922686)
chr2 (54-128)||(17922282-17922355)
[»] chr5 (2 HSPs)
chr5 (162-236)||(10612624-10612698)
chr5 (168-235)||(10565919-10565985)


Alignment Details
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 119 - 237
Target Start/End: Complemental strand, 12949632 - 12949514
Alignment:
Q  119 caaatgatttagaaattttgttcatgacctgaaattaaaatacagaaggccattaataccattatattttgtagtttgggaattttgaaatgcacaataa 218  Q
    ||||||| |||||||||||||||| ||||||||||||||||  |||||| ||||| ||||||||||||||||||| | ||||||||||||||||||||||    
T  12949632 caaatgacttagaaattttgttcaagacctgaaattaaaatcaagaaggtcattattaccattatattttgtagtctaggaattttgaaatgcacaataa 12949533  T
Q  219 gataataaaaataaaattc 237  Q
    ||| |||||||||||||||    
T  12949532 gatgataaaaataaaattc 12949514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 127 - 237
Target Start/End: Complemental strand, 12959083 - 12958973
Alignment:
Q  127 ttagaaattttgttcatgacctgaaattaaaatacagaaggccattaataccattatattttgtagtttgggaattttgaaatgcacaataagataataa 226  Q
    ||||||||||||||||  |||||||||||||||  |||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  12959083 ttagaaattttgttcaaaacctgaaattaaaatcaagaaggtcattattaccattatattttatagtttgggaattttgaaatgcacaataagatgataa 12958984  T
Q  227 aaataaaattc 237  Q
    |||||||||||    
T  12958983 aaataaaattc 12958973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 127 - 237
Target Start/End: Complemental strand, 18556089 - 18555979
Alignment:
Q  127 ttagaaattttgttcatgacctgaaattaaaatacagaaggccattaataccattatattttgtagtttgggaattttgaaatgcacaataagataataa 226  Q
    |||||||| |||||||  |||||||||||||||  ||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18556089 ttagaaatattgttcaaaacctgaaattaaaatcaagaaggtaattattaccattatattttgtagtttgggaattttgaaatgcacaataagatgataa 18555990  T
Q  227 aaataaaattc 237  Q
    |||||||||||    
T  18555989 aaataaaattc 18555979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 119 - 234
Target Start/End: Complemental strand, 12908204 - 12908088
Alignment:
Q  119 caaatgatttagaaattttgttcatgacc-tgaaattaaaatacagaaggccattaataccattatattttgtagtttgggaattttgaaatgcacaata 217  Q
    ||||||| |||||||||||||||| |||| ||||||||||||  |||||| ||||| ||||||||||||||||||||||||||||||||||| || ||||    
T  12908204 caaatgacttagaaattttgttcaagaccctgaaattaaaatcaagaaggtcattattaccattatattttgtagtttgggaattttgaaatacaaaata 12908105  T
Q  218 agataataaaaataaaa 234  Q
    |||| ||||||||||||    
T  12908104 agatgataaaaataaaa 12908088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 119 - 234
Target Start/End: Complemental strand, 12933293 - 12933177
Alignment:
Q  119 caaatgatttagaaattttgttcatgacc-tgaaattaaaatacagaaggccattaataccattatattttgtagtttgggaattttgaaatgcacaata 217  Q
    ||||||| |||||||||||||||| |||| ||||||||||||  |||||| ||||| ||||||||||||||||||||||||||||||||||| || ||||    
T  12933293 caaatgacttagaaattttgttcaagaccctgaaattaaaatcaagaaggtcattattaccattatattttgtagtttgggaattttgaaatacaaaata 12933194  T
Q  218 agataataaaaataaaa 234  Q
    |||| ||||||||||||    
T  12933193 agatgataaaaataaaa 12933177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 115
Target Start/End: Original strand, 12933496 - 12933567
Alignment:
Q  44 ttattaaactatgtgtttaattcctaagcatcttaaactttgtttgcacaaataaaacaacaaacatttcat 115  Q
    |||||||| |||||||| |||||||||| |||||||||||||||||| ||||||||| | |||||| |||||    
T  12933496 ttattaaaatatgtgttcaattcctaagtatcttaaactttgtttgcccaaataaaaaagcaaacaattcat 12933567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 12908417 - 12908482
Alignment:
Q  44 ttattaaactatgtgtttaattcctaagcatcttaaactttgtttgcacaaataaaacaacaaaca 109  Q
    |||||||| |||||||| |||||||||| |||||||||||||||||| ||||||||| | ||||||    
T  12908417 ttattaaaatatgtgttcaattcctaagtatcttaaactttgtttgcccaaataaaaaagcaaaca 12908482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 12900818 - 12900869
Alignment:
Q  77 taaactttgtttgcacaaataaaacaacaaacatttcattgtcaaatgattt 128  Q
    |||||||||||||| ||||||||| ||||||||||||||||| |||||||||    
T  12900818 taaactttgtttgcccaaataaaagaacaaacatttcattgtgaaatgattt 12900869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 12959330 - 12959401
Alignment:
Q  57 tgtttaattcctaagcatcttaaactttgtttgcacaaataaaacaacaaacatttcattgtcaaatgattt 128  Q
    |||| |||||||||| |||||||| | | ||||| |||||||||||| |||||||||||||| |||||||||    
T  12959330 tgttcaattcctaagtatcttaaaatatatttgcccaaataaaacaataaacatttcattgtgaaatgattt 12959401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 116
Target Start/End: Original strand, 12949869 - 12949931
Alignment:
Q  54 atgtgtttaattcctaagcatcttaaactttgtttgcacaaataaaacaacaaacatttcatt 116  Q
    ||||||||||||| |||| || ||||||||||||||| ||||||||||||||| || ||||||    
T  12949869 atgtgtttaattcataagtatattaaactttgtttgcccaaataaaacaacaatcaattcatt 12949931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 12900527 - 12900482
Alignment:
Q  127 ttagaaattttgttcatgacctgaaattaaaatacagaaggccatt 172  Q
    |||||||||||||||| ||||||||||||||||  |||||| ||||    
T  12900527 ttagaaattttgttcaagacctgaaattaaaatcaagaaggtcatt 12900482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 119 - 215
Target Start/End: Original strand, 17922590 - 17922686
Alignment:
Q  119 caaatgatttagaaattttgttcatgacctgaaattaaaatacagaaggccattaataccattatattttgtagtttgggaattttgaaatgcacaa 215  Q
    ||||||| |||||||||||||||| ||||||||||||||||  ||||||  |||| |||||||||||||||||||||||||||||||||||||||||    
T  17922590 caaatgacttagaaattttgttcaagacctgaaattaaaatcaagaaggttattattaccattatattttgtagtttgggaattttgaaatgcacaa 17922686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 17922355 - 17922282
Alignment:
Q  54 atgtgtttaattcctaagcatcttaaactttgtttgcacaaataaaacaacaaacatttcattgtcaaatgattt 128  Q
    ||||||||||||| |||| || ||||||||||||||| ||||||||||||||| || |||| ||| |||||||||    
T  17922355 atgtgtttaattcataagtatattaaactttgtttgcccaaataaaacaacaatcaattca-tgtgaaatgattt 17922282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 162 - 236
Target Start/End: Complemental strand, 10612698 - 10612624
Alignment:
Q  162 agaaggccattaataccattatattttgtagtttgggaattttgaaatgcacaataagataataaaaataaaatt 236  Q
    |||||||||||| ||| ||||||||||| ||||| |||| |||||||||||||||||||| |||||||| |||||    
T  10612698 agaaggccattattactattatattttgaagtttaggaaatttgaaatgcacaataagatgataaaaatcaaatt 10612624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 235
Target Start/End: Complemental strand, 10565985 - 10565919
Alignment:
Q  168 ccattaataccattatattttgtagtttgggaattttgaaatgcacaataagataataaaaataaaat 235  Q
    |||||| ||||||| ||||||||||||| |||||||| ||||||| |||| |||||||||||| ||||    
T  10565985 ccattattaccattgtattttgtagtttaggaatttt-aaatgcaaaatatgataataaaaatcaaat 10565919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University