View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20592_low_2 (Length: 499)
Name: NF20592_low_2
Description: NF20592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20592_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 95 - 480
Target Start/End: Original strand, 35820117 - 35820502
Alignment:
| Q |
95 |
tgaaaacatccaatgtcagattaaaaatacatttaacccatatgttttttctgctaagtttttattttgatattgattatacataaaatttggctgtttc |
194 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35820117 |
tgaaaagatccaatgtcggattaaaaatacatttaacccatatgttttttctgctaagtttttattttgatattgattatacataaaatttggctgtttc |
35820216 |
T |
|
| Q |
195 |
ataagggnnnnnnntcaatagaataatttattatgatgtaaataaagttttgatatttagagatgaaaaaataagatnnnnnnntcagattgttcttact |
294 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35820217 |
ataagggaaaaaaatcaatagaataatttattatgatgtaaataaagttttgatatttagagatgaaaaaataagataaaaaaatcagattgttcttact |
35820316 |
T |
|
| Q |
295 |
aagtgtgtcgctgactagaaacttgattctactagcccagacttcatagtgtcccgaggctttcactgtccaaccatctttcccaccgaccttaaactta |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35820317 |
aagtgtgtcgctgactagaaacttgattctactagcccagacttcatagtgtcccgaggctttcactgtccaaccatctttcccaccgaccttaaactta |
35820416 |
T |
|
| Q |
395 |
tgtgcagatgacaatggagtactgataattagcattgatagaatcaaaagaaaacttgatctcatcattatcaaattattgataag |
480 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35820417 |
tgtgcagataacaatggagtactgataattagcattgatagaatcaaaagaaaacttgatctcatcattatcaaattattgataag |
35820502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 35820050 - 35820095
Alignment:
| Q |
16 |
ataatactgaaaagtggatacataaccaaaaaataaatccgatggc |
61 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35820050 |
ataatactgaaaagtggatacataaccaaaaaataaatccgatggc |
35820095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 359 - 463
Target Start/End: Original strand, 39691679 - 39691783
Alignment:
| Q |
359 |
actgtccaaccatctttcccaccgaccttaaacttatgtgcagatgacaatggagtactgataattagcattgatagaatcaaaagaaaacttgatctca |
458 |
Q |
| |
|
|||| |||||||| || |||||||| |||||||| | |||||||||||||| ||| |||| || ||||||||||| |||||||| ||||| |||||| |
|
|
| T |
39691679 |
actgcccaaccatggttgccaccgacattaaacttgtatgcagatgacaatgaagtgctgagaactagcattgatacaatcaaaacaaaaccatatctca |
39691778 |
T |
|
| Q |
459 |
tcatt |
463 |
Q |
| |
|
||||| |
|
|
| T |
39691779 |
tcatt |
39691783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 359 - 463
Target Start/End: Complemental strand, 39703842 - 39703738
Alignment:
| Q |
359 |
actgtccaaccatctttcccaccgaccttaaacttatgtgcagatgacaatggagtactgataattagcattgatagaatcaaaagaaaacttgatctca |
458 |
Q |
| |
|
|||| |||||||| || |||||||| |||||||| | |||||||||||||| ||| |||| || ||||||||||| |||||||| ||||| |||||| |
|
|
| T |
39703842 |
actgcccaaccatggttgccaccgacattaaacttgtatgcagatgacaatgaagtgctgagaactagcattgatacaatcaaaacaaaaccatatctca |
39703743 |
T |
|
| Q |
459 |
tcatt |
463 |
Q |
| |
|
||||| |
|
|
| T |
39703742 |
tcatt |
39703738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 38712005 - 38712045
Alignment:
| Q |
223 |
tattatgatgtaaataaagttttgatatttagagatgaaaa |
263 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
38712005 |
tattatgatgtttataaagttttgatatttggagatgaaaa |
38712045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University