View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20592_low_3 (Length: 476)
Name: NF20592_low_3
Description: NF20592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20592_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 68 - 466
Target Start/End: Complemental strand, 35819895 - 35819497
Alignment:
| Q |
68 |
ataatgatgatgtgttttagcatgcagatttcaagtataacaaactagtcgattcagtattaatggtaaacaaacaagcctatgattcatgcaatgttac |
167 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
35819895 |
ataatgatgatgtgttttggcatgcagatttcaagtataacaaactagtcgattcactattgatggtaaacaaacaagcctatgattcatgcaacgttac |
35819796 |
T |
|
| Q |
168 |
aaacccaattcgtaagatgcatggtggagattcaacatttttgttggacaaaccaggacacttttacttcatcagtggaaatgttaaacattgcgtaaag |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35819795 |
gaacccaattcgtaagatgcatggtggagattcaacatttttgttggacaaaccgggacacttttacttcatcagtggaaatgttaaacattgcgtaaag |
35819696 |
T |
|
| Q |
268 |
ggtgaaaagttgagccttgtggttttgtcccaccaagaacatcatggaccatcgttatctccagtaccagcaaatgctccgacatcaagtgtgcacgacg |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
35819695 |
ggtgaaaagttgagccttgtggttttgtcccaccaagaacatcatggaccatcgttatctccagtaccagcaaatgctccaacatcaggtgtgcacgacg |
35819596 |
T |
|
| Q |
368 |
ggattgctctggtaccaagtggtcaccacagggttgctccaacaccacatcatgatcattcgggttttacgaggttgagtggttcttttgtggtctgtg |
466 |
Q |
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|||||||||||||| ||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35819595 |
ggattgctctggtatcaagtggtcaccacatggttgctccagcgccacatcatgatcattcgggttttacgaggttgagtggttcttttgtggtctgtg |
35819497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 82 - 248
Target Start/End: Original strand, 39704410 - 39704576
Alignment:
| Q |
82 |
ttttagcatgcagatttcaagtataacaaactagtcgattcagtattaatggtaaacaaacaagcctatgattcatgcaatgttacaaacccaattcgta |
181 |
Q |
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|||| |||||||| ||||||||| |||||| | |||||||||||| ||||||||||||| | |||||||||||||| | | ||| ||||| | | |
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| T |
39704410 |
ttttggcatgcagttttcaagtacaacaaaggatccgattcagtattggtggtaaacaaacacgattatgattcatgcaacatcaaaaatccaatccaca |
39704509 |
T |
|
| Q |
182 |
agatgcatggtggagattcaacatttttgttggacaaaccaggacacttttacttcatcagtggaaa |
248 |
Q |
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||||||||| ||||||||||| | | ||| |||||| ||| | |||| |||||||||||||||| |
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| T |
39704510 |
agatgcatgatggagattcaatttataagtttgacaaagtaggtctctttcacttcatcagtggaaa |
39704576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 39690818 - 39690732
Alignment:
| Q |
75 |
tgatgtgttttagcatgcagatttcaagtataacaaactagtcgattcagtattaatggtaaacaaacaagcctatgattcatgcaa |
161 |
Q |
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|||||| |||| |||||||| ||||||||| ||||| | | ||||||||||| ||||||||||||| | |||||||||||||| |
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| T |
39690818 |
tgatgttttttggcatgcagttttcaagtacaacaacggatttgattcagtattggtggtaaacaaacacgattatgattcatgcaa |
39690732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 92 - 296
Target Start/End: Complemental strand, 38720094 - 38719890
Alignment:
| Q |
92 |
cagatttcaagtataacaaactagtcgattcagtattaatggtaaacaaacaagcctatgattcatgcaatgttacaaacccaattcgtaagatgcatgg |
191 |
Q |
| |
|
|||||||||||||||| ||| | |||||||||||| |||| |||||||||| || |||||||||||| | ||| ||||||| |||| || | | |
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| T |
38720094 |
cagatttcaagtataataaaggatccgattcagtattggtggttaacaaacaagactttgattcatgcaacaccaaaaatccaattcttaagttggacga |
38719995 |
T |
|
| Q |
192 |
tggagattcaacatttttgttggacaaaccaggacacttttacttcatcagtggaaatgttaaacattgcgtaaagggtgaaaagttgagccttgtggtt |
291 |
Q |
| |
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|||||||||||| ||| || ||||| |||| | ||||| |||||||||||||| ||| | ||||| ||||||||||||||||| | |||| ||| |
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| T |
38719994 |
tggagattcaacctttaaatttgacaagtcaggtccctttttcttcatcagtggaatcgttgagaattgccaaaagggtgaaaagttgatcgttgttgtt |
38719895 |
T |
|
| Q |
292 |
ttgtc |
296 |
Q |
| |
|
||||| |
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| T |
38719894 |
ttgtc |
38719890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 296
Target Start/End: Complemental strand, 38711447 - 38711362
Alignment:
| Q |
211 |
ttggacaaaccaggacacttttacttcatcagtggaaatgttaaacattgcgtaaagggtgaaaagttgagccttgtggttttgtc |
296 |
Q |
| |
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||||||||| |||| | ||||||||||||||||||||| ||| | |||| ||||||| ||||||||| ||||| |||||||| |
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| T |
38711447 |
ttggacaaatcaggtcccttttacttcatcagtggaaaagtttcaaattgtctaaagggcgaaaagttgcatcttgttgttttgtc |
38711362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 248
Target Start/End: Complemental strand, 42094953 - 42094793
Alignment:
| Q |
88 |
catgcagatttcaagtataacaaactagtcgattcagtattaatggtaaacaaacaagcctatgattcatgcaatgttacaaacccaattcgtaagatgc |
187 |
Q |
| |
|
|||||||||||||||||||||||| | | |||||||| || | ||||||||||||| ||||||||||||| | |||||| ||| |||||| |
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| T |
42094953 |
catgcagatttcaagtataacaaagaaattgattcagtgttggttgtaaacaaacaagatcatgattcatgcaacaccaaaaacccgatttacaagatgg |
42094854 |
T |
|
| Q |
188 |
atggtggagattcaacatttttgttggacaaaccaggacacttttacttcatcagtggaaa |
248 |
Q |
| |
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| |||||||||||| | ||| |||||||| |||| | |||||||||||| |||||||| |
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| T |
42094853 |
aaggtggagattcagcctttcaattggacaagtcaggtcccttttacttcattagtggaaa |
42094793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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