View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20593_high_16 (Length: 363)
Name: NF20593_high_16
Description: NF20593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20593_high_16 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 363
Target Start/End: Original strand, 31857886 - 31858232
Alignment:
| Q |
18 |
aataccacttgatcaagatattattattct-acgagcttaagagtttactcgaaaaatcaatttaatataaattattgtagcttgagattcttacagaag |
116 |
Q |
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| T |
31857886 |
aataccacttgatcaagatattattattctcacgagcttaagagtttactcgaaaaatcaatttaatataaactattgtagcttgagattcttacagaag |
31857985 |
T |
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| Q |
117 |
cagtttgcttggtagaataaaacatgaataaagtaaagtgtttttatcatatcttgagttttactgctccaatcaagttgattcgtgtactcttagaaag |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31857986 |
cagtttgcttggtagaataaaacatgaataaagtaaagtgtttttatcatatcttgagttttactgctccaatcaagttgattcgtgtactcttataaag |
31858085 |
T |
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| Q |
217 |
cttatggtattatctacaaccttcgtgttcatatcgaattccatttcttccgtgactatgtgaaatagttgaaaacaatacagacaatatgagggatgga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31858086 |
cttatggtattatctacaaccttcgtgttcatatcgaattccatttcttccgtgaccatgtgaaatagttgaaaacaatacagacaatatgagggatgga |
31858185 |
T |
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| Q |
317 |
tgcatgatattcgctcaggaatgttagaaacaaacggcaatacaaca |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31858186 |
tgcatgatattcgctcaggaatgttagaaacaaacggcaatacaaca |
31858232 |
T |
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