View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20593_high_19 (Length: 308)

Name: NF20593_high_19
Description: NF20593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20593_high_19
NF20593_high_19
[»] chr2 (1 HSPs)
chr2 (1-203)||(26377196-26377398)
[»] chr3 (2 HSPs)
chr3 (129-204)||(50063925-50064000)
chr3 (137-197)||(7227152-7227212)
[»] chr1 (2 HSPs)
chr1 (129-199)||(33966650-33966720)
chr1 (129-197)||(50204531-50204599)
[»] chr6 (2 HSPs)
chr6 (129-204)||(25101044-25101119)
chr6 (129-166)||(23890001-23890038)
[»] chr5 (1 HSPs)
chr5 (137-197)||(43281148-43281208)
[»] chr4 (1 HSPs)
chr4 (131-197)||(55911195-55911260)
[»] chr8 (1 HSPs)
chr8 (143-199)||(29168556-29168612)
[»] chr7 (1 HSPs)
chr7 (137-197)||(46082492-46082552)


Alignment Details
Target: chr2 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 26377196 - 26377398
Alignment:
Q  1 tgcacaagaacaaaatgattggttgtcaattgtacacgtctcagacgacacatgggctatagtagnnnnnnnnaatgcaattcttagactagagtaaaaa 100  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||        |||||||||||||||||||||||||||    
T  26377196 tgcacaagaacaaaatgattggttgtcaactgtacacgtctctgacgacacatgggctatagtagttttttttaatgcaattcttagactagagtaaaaa 26377295  T
Q  101 gatttgttttgggtttctaatagtaggaaggatcgtgtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgacttcat 200  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26377296 gatttgttttgggtttctaatagtaggaaggatcgagtgctggctcgtaggatcttacgattctacgtgccacggcacctccaccgtgcttcgacttcat 26377395  T
Q  201 tcc 203  Q
    |||    
T  26377396 tcc 26377398  T

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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 129 - 204
Target Start/End: Original strand, 50063925 - 50064000
Alignment:
Q  129 aggatcgtgtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgacttcattccg 204  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||| ||||    
T  50063925 aggatcgagtgctggctcgtaggatcttacgattctacgtgccacggcacctcaaccgagcttcgacttcactccg 50064000  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 7227152 - 7227212
Alignment:
Q  137 gtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgactt 197  Q
    |||||||||| ||||||  ||||||||||| | |||| ||||||| ||| |||||||||||    
T  7227152 gtgctggctcttaggattgtacgattctacgtcccacagcacctcgaccatgcttcgactt 7227212  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 33966650 - 33966720
Alignment:
Q  129 aggatcgtgtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgacttca 199  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||    
T  33966650 aggatcgagtgctggctcgtaggatcttacgattctacgtgccacggcacctcaaccgtgctttgacttca 33966720  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 50204531 - 50204599
Alignment:
Q  129 aggatcgtgtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgactt 197  Q
    ||||||| ||||||| |||||||||| || ||| |||| | |||| ||||||| | |||||||||||||    
T  50204531 aggatcgagtgctggttcgtaggatcgtatgatcctacgttccacagcacctcaatcgtgcttcgactt 50204599  T

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Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 129 - 204
Target Start/End: Complemental strand, 25101119 - 25101044
Alignment:
Q  129 aggatcgtgtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgacttcattccg 204  Q
    ||||||| |||||||||||||||||||||||||||||  | |||||||||||| ||||||||||||||||| ||||    
T  25101119 aggatcgagtgctggctcgtaggatcttacgattctatgtcccacggcacctcaaccgtgcttcgacttcactccg 25101044  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 166
Target Start/End: Complemental strand, 23890038 - 23890001
Alignment:
Q  129 aggatcgtgtgctggctcgtaggatcttacgattctac 166  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  23890038 aggatcgagtgctggctcgtaggatcgtacgattctac 23890001  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 43281208 - 43281148
Alignment:
Q  137 gtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgactt 197  Q
    ||||||| || ||||||| ||||||||||||| |||||||||||| | | |||||||||||    
T  43281208 gtgctggttcataggatcgtacgattctacatcccacggcacctcaatcatgcttcgactt 43281148  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 55911195 - 55911260
Alignment:
Q  131 gatcgtgtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgactt 197  Q
    ||||| ||||||| |||||||||| |||||| |||||| |||||||||||| | ||||||| |||||    
T  55911195 gatcgagtgctggttcgtaggatcatacgatcctacat-ccacggcacctcaatcgtgctttgactt 55911260  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 29168612 - 29168556
Alignment:
Q  143 gctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgacttca 199  Q
    ||||||||||||  |||||  ||| |||||| ||||||| |||||||||||||||||    
T  29168612 gctcgtaggatcacacgatcttacgtgccacagcacctcgaccgtgcttcgacttca 29168556  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 46082552 - 46082492
Alignment:
Q  137 gtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgactt 197  Q
    |||||||||| ||||||| ||||||||||  | || | ||||||| |||||||||||||||    
T  46082552 gtgctggctcataggatcgtacgattctatgtccctccgcacctcaaccgtgcttcgactt 46082492  T

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