View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20593_high_3 (Length: 666)
Name: NF20593_high_3
Description: NF20593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20593_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 190 - 658
Target Start/End: Original strand, 41845014 - 41845482
Alignment:
| Q |
190 |
ctcataaatctccatcatacaattgcaatgattaaattgacttatnnnnnnnnnggacatatatgattgaaaaaattcaaaagactaatttgaaagagtg |
289 |
Q |
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| T |
41845014 |
ctcataaatctccatcatacaatttcaatgattaaattgacttataaaaaaaaaggacatatatgattgaaaaaattcaaaagactaatttgaaagagtg |
41845113 |
T |
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| Q |
290 |
gtgatatttatcgcgacaaaaaatgtcccaaaattatcttatgtttcattccattgaatcttccgcattgtagacggtatgatataaaaagatggaccat |
389 |
Q |
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| T |
41845114 |
gtgatatttatcgcgacaaaaaatgtcccaaaattatcttgtgtttcattccattgaatcttccgcattgtagacggtatgatataaagagatggaccat |
41845213 |
T |
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| Q |
390 |
gacatttgttaaaatagcgtcgtggnnnnnnncttcttcttgaaatgctttttcgctataaataacatttccctttcaaaaattgttatgttgtttttat |
489 |
Q |
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| T |
41845214 |
gacatttgttaaaatagcgtcgtggttttttttttcttcttgaaatgctttttcgctataaataacatttcccttttaaaaattgttatcttgtttttat |
41845313 |
T |
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| Q |
490 |
tttcacttctcctaataaacatacataagagaatatactattatatacaatattttcctcaccgttttatttggactaaaatattatgtagatttatgga |
589 |
Q |
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| T |
41845314 |
tttcacttctcctaataaacatacataagagaatatactattatataaaatattttcctcaccgttttatttggactaaaatattacgtagatttatgga |
41845413 |
T |
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| Q |
590 |
accaacaatattactagatcccccacttgaatcagcaataatgacagaagaaatctttggccctatgct |
658 |
Q |
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| T |
41845414 |
accaacaatattactagatcccccacttgaatcagcaataatgacagaagaaatctttggccctgtgct |
41845482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 41844860 - 41844954
Alignment:
| Q |
29 |
taattaatactctcttttcttacttgctagaatgttcgttcaatccgagttttacattcatggatcatcaatttagtgtctaaaattatagatcacagtc |
128 |
Q |
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| T |
41844860 |
taattaatactctcttttcttacttactagaatgttc----aatccgagttttac-ttcatggatcatcaatttagtgtctaaaattatagatcacagtc |
41844954 |
T |
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