View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20593_high_35 (Length: 215)
Name: NF20593_high_35
Description: NF20593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20593_high_35 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 74 - 205
Target Start/End: Original strand, 1111017 - 1111148
Alignment:
| Q |
74 |
gtttcctaatttatctttgcggcagttacaaattgacatnnnnnnnnnnnnnnnnnnttccattaagaaattattttaacgtttccactttgtttcatca |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1111017 |
gtttcctaatttatctttgcggcagttacaaattgacatgaaaaacaaaaactaaaattccattaacaaattattttaacgtttccactttgtttcatca |
1111116 |
T |
|
| Q |
174 |
atcagtcacacacagtaataacgcttcctttg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
1111117 |
atcagtcacacacagtaataacgcttcctttg |
1111148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 1110899 - 1110974
Alignment:
| Q |
1 |
acaaaatatttgactttgggaagnnnnnnnntt-caacccttgtacgtacacttgtttgtacccttacttctttgt |
75 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1110899 |
acaaaatatttgactttgggaagaaaaaaaattacaacccttgtacgcacacttgtttgtacccttacttctttgt |
1110974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University