View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20593_high_6 (Length: 495)
Name: NF20593_high_6
Description: NF20593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20593_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 439; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Complemental strand, 36516452 - 36515977
Alignment:
| Q |
1 |
aatagatgaatactttgtccaataattgtcnnnnnnncttctttcccacatacatgtgattttgattttgtgcacaacctagctatatgttaattaatgt |
100 |
Q |
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| T |
36516452 |
aatagatgaatactttgtccaataattgtctttttttcttctttcccacatacatgtgattttgattttgtgcacaacctagctatatgttaattaatgt |
36516353 |
T |
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| Q |
101 |
ttgattaatattttgttttgatgtttttgtacatgtaggaggatgagggaagatataattcaatggccaacaatggagaattgaatttagataacaaatt |
200 |
Q |
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| T |
36516352 |
ttgattaatattttgttttgatgtttttgtacatgtaggaggatgagggaagatataattcaatggccaacaatggagaattgaatttagataacaaatt |
36516253 |
T |
|
| Q |
201 |
gcctataagaagatcaatgcaaggagataaaaatttggagaaggttgaaggaagtcttgcaaaagcaagagcattgataaaacaagccttgttgagaacc |
300 |
Q |
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| T |
36516252 |
gcctataagaagatcaatgcaaggagataaaaatttggagaaggttgaaggaagtcttgcaaaagcaagagcattgataaaacaagccttgttgagaacc |
36516153 |
T |
|
| Q |
301 |
aatgacaccgtagtgcctcttgaggactctcatggttatgttccacaaggacacatctacagaaatgcctttgcttttcataggtaagattttatggaat |
400 |
Q |
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| T |
36516152 |
aatgacaccgtagtgcctcttgaggactctcatgattatgttccacaaggacacatctacagaaatgcctttgcttttcataggtaagattttatgaaat |
36516053 |
T |
|
| Q |
401 |
atatcacgagagataaggattttattactcatcaaaggtcagattgagttagtgtcacttaggtaacatagcaaag |
476 |
Q |
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| T |
36516052 |
atatcacgagaaataaggattttattactcatcaaaggtcagattgagttagtgccacttaggtaacatagcaaag |
36515977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 50 - 439
Target Start/End: Original strand, 36804819 - 36805217
Alignment:
| Q |
50 |
atacatgtgattttgattttgtgcacaacctagctatatgttaattaatgtttgattaatattttgttttgatgtttttgtacatgtaggaggatgaggg |
149 |
Q |
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| T |
36804819 |
atacatgtgattttgattttgtgcaca-cctagcta-atggtaattaatgtttgattaatactttgttttgttgtttttgtacatataggaggatgaggg |
36804916 |
T |
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| Q |
150 |
aagatataattcaatggccaacaatggagaattgaatttagataacaaattgcctataagaagatcaatgcaaggagataaaaatttggagaaggttgaa |
249 |
Q |
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| T |
36804917 |
aagatataagccaatggcatacaatggagaattgaatttaggtaacaaattgcctataagaagatcaatgcaagaagatagaaatttggagaaggtagaa |
36805016 |
T |
|
| Q |
250 |
ggaagtcttgcaaaagcaagagcattgataaaacaagccttgttgagaaccaatgacaccgt------agtgcctcttgaggactctcatggttatgttc |
343 |
Q |
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| T |
36805017 |
ggaagtcttgcaaaagcaagagcattgataaaacaagccttgttaagaacaaatgacaccgtactagcactacctcttgaggactctcatgattttgttc |
36805116 |
T |
|
| Q |
344 |
cacaaggacacatctacagaaatgcctttgcttttcataggtaagattttatggaatata-----tcacgagagataaggattttattactcatcaaagg |
438 |
Q |
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| T |
36805117 |
cacaaggagacatttacagaaatgcctttgcttttcataggtaagattttatgaactatatcaattcatgagagataaggattttattactcatcaaagg |
36805216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 175 - 327
Target Start/End: Complemental strand, 36538601 - 36538450
Alignment:
| Q |
175 |
ggagaattgaatttagataacaaattgcctataagaagatcaatgcaaggagataaaaatttggagaaggttgaaggaagtcttgcaaaagcaagagcat |
274 |
Q |
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|||||||||| ||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36538601 |
ggagaattgattttagttaacaaattgcccataagaagatcaatgcaaggagatagaaatttggagaaggttgaaggaagtcttgcaaaagcaagagcat |
36538502 |
T |
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| Q |
275 |
tgataaaacaagccttgttgagaaccaatgacaccgtagtgcctcttgaggac |
327 |
Q |
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| T |
36538501 |
tgataaaacaagcctt-atgagaaccaatgacactgtactacctcttgaggac |
36538450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 316 - 446
Target Start/End: Complemental strand, 36520382 - 36520252
Alignment:
| Q |
316 |
cctcttgaggactctcatggttatgttccacaaggacacatctacagaaatgcctttgcttttcataggtaagattttatggaatatatcacgagagata |
415 |
Q |
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| T |
36520382 |
cctcttgaggactctcatgattatgttccacaaggagacatctacagaaatgcatttgcttttcataggtaagattttatgaactatatcatgagagaga |
36520283 |
T |
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| Q |
416 |
aggattttattactcatcaaaggtcagattg |
446 |
Q |
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| T |
36520282 |
aggattttattactcatcaaagatcggattg |
36520252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 42 - 138
Target Start/End: Complemental strand, 36538714 - 36538617
Alignment:
| Q |
42 |
tttcccacatacatgtgattttgatttt-gtgcacaacctagctatatgttaattaatgtttgattaatattttgttttgatgtttttgtacatgtag |
138 |
Q |
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| T |
36538714 |
tttcccacatacatgtgattttgatttttgtacacaacctagctagagattaattaatgtttgattaatattttgttttgttgtttttgtacatgtag |
36538617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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