View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20593_high_7 (Length: 479)
Name: NF20593_high_7
Description: NF20593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20593_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 14 - 256
Target Start/End: Original strand, 46232710 - 46232952
Alignment:
| Q |
14 |
atctcgacttatgaagatggcaccaaagttcaatattccatataccaaacctacacaagttcaatatgcctaaatcatttatcattccctccttgttcat |
113 |
Q |
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| T |
46232710 |
atctcgacttatgaagatgggaccaaagttcaatattccatataccaaacctacacaagttcaatatgcctaaatcattgatcattccctccttgttcat |
46232809 |
T |
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| Q |
114 |
tgttagctaccgcctcctcatccgatcccaacgtgccactagtaaaatatcctgcaacttagacttataaataagctcaaatatttgcagccattctacc |
213 |
Q |
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| T |
46232810 |
tgttagctaccgcctcctcatccgatcccaacgtgccactagtaaaatatcctgcaacttagacttataaataagctcaaatatttgcagccattctacc |
46232909 |
T |
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| Q |
214 |
aaattcaactcatgacaatacagacataaattttcttttctga |
256 |
Q |
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| T |
46232910 |
aaattcaactcatgacaatacagacataaattttcttttctga |
46232952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 256 - 391
Target Start/End: Original strand, 46232975 - 46233110
Alignment:
| Q |
256 |
actcccaaacactgtacaacatttgattcataaaagtggtgagctaaattaggaaatacaaattttatcttttgttcttgttgtagtagaaacccctaga |
355 |
Q |
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| T |
46232975 |
actcccaaacactgtacaacatttgattcataaaagtggtgagctaaattaggaaatacaaattttatcttttgttcttgttgtagtagaaacccctaga |
46233074 |
T |
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| Q |
356 |
aaggaaattcaatattcttataatgttatatatcat |
391 |
Q |
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| T |
46233075 |
aaggaaattcaatattcttataatgttatatatcat |
46233110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 470
Target Start/End: Original strand, 46233155 - 46233189
Alignment:
| Q |
436 |
tatttcaattttttcaaattacttgcactctccta |
470 |
Q |
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| T |
46233155 |
tatttcaattttttcaaattacttgcactctccta |
46233189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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