View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20593_low_10 (Length: 447)
Name: NF20593_low_10
Description: NF20593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20593_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 363
Target Start/End: Original strand, 21973181 - 21973517
Alignment:
| Q |
18 |
gtttgcagatgaacatgaaactataagattcctcaatttcatgtacaccaccaaagacaaaaccgagttcaatttttatgttgtgaaatatagaatctat |
117 |
Q |
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| T |
21973181 |
gtttgcagatgaacatgaacc-ataagattcctcaatttcatgtaaactaccaaagacaaaaccgagttcaatttt-atgttgtgaaatatagaatctat |
21973278 |
T |
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| Q |
118 |
gtacttgaatttatatttattggtaaattgtatctttcagcatgccatttttatgtatgatgacaggttggtgatccatttctattagtagagatataat |
217 |
Q |
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| T |
21973279 |
gtacttgaattt------attggtaaattgtatctttcagcatgccatttttatgtatgatgacaggttcgtgatccatttctattagtagagatataat |
21973372 |
T |
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| Q |
218 |
taaggtgatcctagtttatattgtaatagttattttttgtttgacttaatttgcagaggtagttattaattcaatggtaggccttatgattttttaaagg |
317 |
Q |
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| T |
21973373 |
taaggtgatcctagtttatattgtaatagttattttttgtttgacttaatttgcagaggtagttattaattcaatggtaggccttatgattttttaaagg |
21973472 |
T |
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| Q |
318 |
aagtatgtcattaatatattaatattttgtacatgtttaattttta |
363 |
Q |
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| T |
21973473 |
aagtatgtcattaatatattaata-tttgtacatgtttaattttta |
21973517 |
T |
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