View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20593_low_11 (Length: 442)

Name: NF20593_low_11
Description: NF20593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20593_low_11
NF20593_low_11
[»] chr1 (22 HSPs)
chr1 (13-393)||(5160092-5160472)
chr1 (262-368)||(30259517-30259625)
chr1 (263-343)||(2152191-2152272)
chr1 (263-332)||(15360827-15360899)
chr1 (266-343)||(48830130-48830210)
chr1 (266-343)||(49517006-49517086)
chr1 (262-343)||(1730824-1730907)
chr1 (267-339)||(17009613-17009688)
chr1 (269-343)||(4549596-4549673)
chr1 (269-343)||(33527201-33527278)
chr1 (273-343)||(40304108-40304181)
chr1 (263-331)||(45107556-45107626)
chr1 (263-340)||(5756743-5756823)
chr1 (269-344)||(17422991-17423070)
chr1 (263-340)||(44032056-44032136)
chr1 (271-339)||(44422642-44422711)
chr1 (269-301)||(2462906-2462938)
chr1 (300-343)||(4548693-4548737)
chr1 (265-318)||(15437898-15437953)
chr1 (268-340)||(36151562-36151637)
chr1 (300-343)||(37272640-37272684)
chr1 (271-331)||(45999354-45999417)
[»] chr7 (30 HSPs)
chr7 (263-343)||(5369745-5369826)
chr7 (263-350)||(49060473-49060563)
chr7 (269-334)||(35536046-35536114)
chr7 (269-328)||(45593788-45593850)
chr7 (263-341)||(5373158-5373239)
chr7 (263-318)||(30496637-30496694)
chr7 (270-343)||(5006563-5006639)
chr7 (263-343)||(9527144-9527227)
chr7 (263-343)||(27481348-27481431)
chr7 (269-329)||(31341133-31341196)
chr7 (263-318)||(33894556-33894612)
chr7 (258-294)||(35809010-35809046)
chr7 (263-343)||(39551602-39551685)
chr7 (263-343)||(47004020-47004103)
chr7 (263-294)||(2223081-2223112)
chr7 (263-343)||(46223127-46223209)
chr7 (263-334)||(1423079-1423152)
chr7 (270-340)||(6824858-6824931)
chr7 (271-341)||(28340452-28340525)
chr7 (263-340)||(2894750-2894830)
chr7 (266-307)||(3836753-3836794)
chr7 (269-318)||(45344480-45344529)
chr7 (263-343)||(46081966-46082050)
chr7 (320-349)||(47510100-47510129)
chr7 (267-343)||(1417201-1417280)
chr7 (263-291)||(27389316-27389344)
chr7 (300-343)||(29363490-29363534)
chr7 (300-343)||(31338480-31338524)
chr7 (300-343)||(44821931-44821975)
chr7 (263-291)||(47528042-47528070)
[»] chr5 (18 HSPs)
chr5 (269-343)||(26209467-26209543)
chr5 (263-343)||(32059643-32059725)
chr5 (278-340)||(14295454-14295519)
chr5 (269-343)||(16889674-16889751)
chr5 (269-339)||(28586824-28586897)
chr5 (263-332)||(35135727-35135799)
chr5 (269-343)||(18704090-18704166)
chr5 (263-343)||(18857454-18857537)
chr5 (263-301)||(29588813-29588851)
chr5 (269-338)||(14599362-14599436)
chr5 (263-317)||(21782650-21782706)
chr5 (271-343)||(42583396-42583469)
chr5 (272-343)||(1619034-1619106)
chr5 (263-312)||(7096213-7096264)
chr5 (269-325)||(12521490-12521546)
chr5 (262-294)||(13224361-13224393)
chr5 (274-318)||(38338268-38338312)
chr5 (300-343)||(41277404-41277448)
[»] chr6 (19 HSPs)
chr6 (266-338)||(33500540-33500615)
chr6 (268-343)||(33787799-33787877)
chr6 (264-343)||(6647323-6647403)
chr6 (264-343)||(10452414-10452496)
chr6 (263-343)||(33911336-33911418)
chr6 (269-343)||(29274283-29274360)
chr6 (263-317)||(32975911-32975967)
chr6 (263-343)||(4006647-4006730)
chr6 (266-343)||(22691574-22691652)
chr6 (263-318)||(24774691-24774748)
chr6 (263-338)||(4247694-4247771)
chr6 (301-345)||(5550105-5550150)
chr6 (263-339)||(323744-323823)
chr6 (263-343)||(2514635-2514718)
chr6 (268-317)||(4420555-4420606)
chr6 (263-310)||(8010290-8010338)
chr6 (263-335)||(9027510-9027585)
chr6 (300-343)||(10154193-10154237)
chr6 (270-318)||(31564768-31564816)
[»] chr8 (15 HSPs)
chr8 (269-343)||(11795031-11795108)
chr8 (275-343)||(6509357-6509426)
chr8 (269-344)||(9699940-9700018)
chr8 (269-343)||(28769393-28769470)
chr8 (263-318)||(5290574-5290626)
chr8 (271-343)||(1470910-1470985)
chr8 (263-291)||(4558731-4558759)
chr8 (263-318)||(8536129-8536185)
chr8 (275-343)||(9836908-9836979)
chr8 (270-343)||(10075605-10075681)
chr8 (263-311)||(26716525-26716573)
chr8 (269-341)||(29699193-29699268)
chr8 (263-339)||(30988050-30988129)
chr8 (300-340)||(34236135-34236175)
chr8 (263-307)||(43208226-43208270)
[»] chr2 (22 HSPs)
chr2 (267-343)||(29430693-29430771)
chr2 (262-343)||(29503137-29503219)
chr2 (263-345)||(3235436-3235519)
chr2 (263-371)||(10143105-10143214)
chr2 (269-341)||(5133711-5133786)
chr2 (269-339)||(7103541-7103612)
chr2 (263-342)||(37053527-37053609)
chr2 (275-368)||(1742063-1742157)
chr2 (263-343)||(35755556-35755639)
chr2 (263-342)||(3673740-3673822)
chr2 (263-294)||(13864583-13864614)
chr2 (263-341)||(14277949-14278031)
chr2 (263-294)||(38239657-38239688)
chr2 (269-343)||(3102632-3102709)
chr2 (263-293)||(9478232-9478262)
chr2 (269-343)||(17952755-17952832)
chr2 (269-343)||(39341139-39341218)
chr2 (263-317)||(5045238-5045294)
chr2 (269-343)||(39621892-39621967)
chr2 (263-331)||(33192126-33192197)
chr2 (263-343)||(34054955-34055038)
chr2 (304-343)||(37276722-37276762)
[»] chr4 (17 HSPs)
chr4 (263-343)||(32920454-32920535)
chr4 (268-343)||(35958593-35958671)
chr4 (263-343)||(23819023-23819105)
chr4 (263-340)||(42321936-42322016)
chr4 (263-313)||(51044544-51044596)
chr4 (263-318)||(4191672-4191730)
chr4 (275-334)||(21952906-21952968)
chr4 (264-343)||(49219073-49219155)
chr4 (263-318)||(54462180-54462235)
chr4 (269-339)||(30338650-30338723)
chr4 (263-341)||(54325093-54325174)
chr4 (269-311)||(55437373-55437415)
chr4 (263-344)||(21157701-21157785)
chr4 (263-332)||(46013365-46013437)
chr4 (300-343)||(18628597-18628641)
chr4 (263-316)||(21952508-21952563)
chr4 (263-368)||(30207602-30207707)
[»] chr3 (19 HSPs)
chr3 (263-343)||(38462214-38462297)
chr3 (271-318)||(51278237-51278286)
chr3 (274-343)||(24887337-24887409)
chr3 (274-343)||(28306102-28306174)
chr3 (263-339)||(20192664-20192743)
chr3 (271-343)||(22232767-22232842)
chr3 (263-318)||(12985403-12985458)
chr3 (269-316)||(20669118-20669167)
chr3 (269-343)||(23815992-23816066)
chr3 (263-342)||(42039092-42039173)
chr3 (270-343)||(1395611-1395687)
chr3 (263-340)||(3182419-3182499)
chr3 (265-294)||(44488819-44488848)
chr3 (303-342)||(2201103-2201143)
chr3 (263-312)||(24605102-24605153)
chr3 (300-343)||(31337455-31337499)
chr3 (269-318)||(40122832-40122883)
chr3 (300-343)||(41452495-41452539)
chr3 (263-343)||(42084305-42084388)
[»] scaffold0024 (1 HSPs)
scaffold0024 (263-343)||(27509-27592)
[»] scaffold0590 (1 HSPs)
scaffold0590 (263-313)||(1159-1211)
[»] scaffold0275 (1 HSPs)
scaffold0275 (263-313)||(2764-2816)
[»] scaffold0100 (1 HSPs)
scaffold0100 (263-375)||(42550-42662)


Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 13 - 393
Target Start/End: Original strand, 5160092 - 5160472
Alignment:
Q  13 aatatgggatgttgttgttgatccttcgtttcaagggcttggtctagggaaagctgttgtggagaggcttatgaaggatcttgtaggaaaagggattacc 112  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  5160092 aatatgggatgttgttgttgatccttcgtttcaagggcttgggctagggaaagctgttgtggagaggcttatgagggatcttgtaggaagagggattacc 5160191  T
Q  113 aatatttctctttattctgagccaagagttcttggcttttatcgacctttgggttttgttgctgatcctgatggtattcgtggaatggtttactctacnn 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  5160192 aatatttctctttattctgagccaagagttcttggcttttatcgacctttgggttttgttgctgatcctgatggtattcgtggaatggtttactctacaa 5160291  T
Q  213 nnnnnnnnnnnnnnnnntagttgtacgtgagtgttctttgtattttcatgaagtgtttatgtataagctatttctataacaacatataataaagtcaaac 312  Q
                     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5160292 aaaacaaaagaaaaaaatagttgtacgtgagtgttctttgtattttcatgaagtgtttatgtataagctatttctataacaacatataataaagtcaaac 5160391  T
Q  313 tgttttatataagttataagctgttttcatataagctaccataaagagtttatggatatataaagctaaacaagttaatgg 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5160392 tgttttatataagttataagctgttttcatataagctaccataaagagtttatggatatataaagctaaacaagttaatgg 5160472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 262 - 368
Target Start/End: Complemental strand, 30259625 - 30259517
Alignment:
Q  262 gaagtgtttatgtataagctatttctataacaacatat--aataaagtcaaactg-ttttatataagttataagctgttttcatataagctaccataaag 358  Q
    |||||| ||||| | |||||||||||||||||| ||||  ||||||||||||||| ||| ||||||| |||||||||||| |||| |||||| |||  ||    
T  30259625 gaagtgcttatgcacaagctatttctataacaaaatataaaataaagtcaaactgctttgatataagctataagctgtttgcata-aagctatcatggag 30259527  T
Q  359 agtttatgga 368  Q
    || |||||||    
T  30259526 agcttatgga 30259517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 263 - 343
Target Start/End: Original strand, 2152191 - 2152272
Alignment:
Q  263 aagtgtttatgtataagctatttctataacaacatataataaagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    ||||| ||||||||||||||||||||| |||| |||   |||||| ||||| |||| |||||||||||||| || |||||||    
T  2152191 aagtgcttatgtataagctatttctatgacaagataatgtaaagtgaaactattttaatataagttataaggtggtttcata 2152272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 263 - 332
Target Start/End: Original strand, 15360827 - 15360899
Alignment:
Q  263 aagtgtttatgtataagctatttctataac--aacatataataaagtcaaactgtttt-atataagttataag 332  Q
    |||||||||||||| || ||||||||||||  || ||| ||||||||||||||||||| ||||||| ||||||    
T  15360827 aagtgtttatgtattagttatttctataacaaaagataaaataaagtcaaactgttttcatataagctataag 15360899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 266 - 343
Target Start/End: Complemental strand, 48830210 - 48830130
Alignment:
Q  266 tgtttatgtataagctatttctataac--aacatataataaagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    |||||||||||||| ||||||||| ||  || ||| |||||||||||||| |||| ||||||| ||||| |||||||||||    
T  48830210 tgtttatgtataagttatttctattaccaaagataaaataaagtcaaactattttcatataagctataaactgttttcata 48830130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 266 - 343
Target Start/End: Original strand, 49517006 - 49517086
Alignment:
Q  266 tgtttatgtataagctatttctataac--aacatataataaagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    ||||| |||||||| ||||||||||||  || ||| |||||||||||| |||||| || |||| |||||||||||||||||    
T  49517006 tgtttgtgtataagttatttctataacaaaagataaaataaagtcaaattgttttcatttaagctataagctgttttcata 49517086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 262 - 343
Target Start/End: Original strand, 1730824 - 1730907
Alignment:
Q  262 gaagtgtttatgtataagctatttctataac--aacatataataaagtcaaactgttttatataagttataagctgttttcata 343  Q
    |||||| ||||||||||||||||| | ||||  || ||| |||||||||||||| ||| || ||||||||||| | ||||||||    
T  1730824 gaagtgcttatgtataagctatttttttaaccaaagataaaataaagtcaaactatttcatgtaagttataagttattttcata 1730907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 339
Target Start/End: Complemental strand, 17009688 - 17009613
Alignment:
Q  267 gtttatgtataagctatttctataacaaca--tataataaagtcaaactgt-tttatataagttataagctgtttt 339  Q
    ||||||||||||||||||| || ||||| |   |||||||||||||||||| |||||||||| ||| |||||||||    
T  17009688 gtttatgtataagctatttttaaaacaaaagtaataataaagtcaaactgtatttatataagctattagctgtttt 17009613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 343
Target Start/End: Complemental strand, 4549673 - 4549596
Alignment:
Q  269 ttatgtataagctatttctataacaaca--tataataaagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    |||||||| |||||||||||| ||| ||  ||||||||||| |||||||||| ||| ||| |||||| ||||||||||    
T  4549673 ttatgtattagctatttctatgacagcagatataataaagtaaaactgttttcatacaagctataagatgttttcata 4549596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 343
Target Start/End: Complemental strand, 33527278 - 33527201
Alignment:
Q  269 ttatgtataagctatttctataac--aacatataataaagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    ||||| |||||||||||||| |||  || ||| |||| |||||||||||||| ||||||  |||||||||||||||||    
T  33527278 ttatgaataagctatttctaaaacaaaagataaaatacagtcaaactgttttcatataatctataagctgttttcata 33527201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 343
Target Start/End: Complemental strand, 40304181 - 40304108
Alignment:
Q  273 gtataagctatttctataacaacatataa--taaagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    ||||||||||||| |||||||| | ||||  |||| ||| | |||||| |||||||||||||||||||||||||    
T  40304181 gtataagctatttatataacaaaagataaaataaaatcacattgttttcatataagttataagctgttttcata 40304108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 331
Target Start/End: Original strand, 45107556 - 45107626
Alignment:
Q  263 aagtgtttatgtataagctatttctataa-caacatataataaagtcaaactgtttt-atataagttataa 331  Q
    ||||| |||| ||||||||||||||||||  || ||| |||||||||||||| |||| |||||||||||||    
T  45107556 aagtgcttatctataagctatttctataagaaaaataaaataaagtcaaactattttcatataagttataa 45107626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 340
Target Start/End: Complemental strand, 5756823 - 5756743
Alignment:
Q  263 aagtgtttatgtataagctatttctataacaacatat--aataaagtcaaactgtttt-atataagttataagctgttttc 340  Q
    ||||||| | |||||||||||||||||||||| | ||   ||||||| |||||||||| |||||| ||||||| |||||||    
T  5756823 aagtgttcacgtataagctatttctataacaaaagatgatataaagttaaactgttttcatataaattataagttgttttc 5756743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 344
Target Start/End: Complemental strand, 17423070 - 17422991
Alignment:
Q  269 ttatgtataagctatttctataacaa---catataataaagtcaaactg-ttttatataagttataagctgttttcatat 344  Q
    ||||||||||||| ||||||||||||    ||| ||||||||||| ||| ||| ||||||| |||||| |||||||||||    
T  17423070 ttatgtataagctttttctataacaaaacgataaaataaagtcaagctgatttcatataagctataagttgttttcatat 17422991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 340
Target Start/End: Complemental strand, 44032136 - 44032056
Alignment:
Q  263 aagtgtttatgtataagctatttctataacaaca--tataataaagtcaaactgtttt-atataagttataagctgttttc 340  Q
    ||||||||||||||||||  |||||||||||| |  || |||||||||||| |||||| ||||||| ||||| || |||||    
T  44032136 aagtgtttatgtataagccgtttctataacaaaagctaaaataaagtcaaattgttttcatataagctataaactattttc 44032056  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 339
Target Start/End: Original strand, 44422642 - 44422711
Alignment:
Q  271 atgtataagctatttctataacaacatataataaagtcaaactgtttt-atataagttataagctgtttt 339  Q
    ||||||||||||||| |||||||  ||| |||||  |||||||||||| ||||||| |||||||| ||||    
T  44422642 atgtataagctatttttataacatgataaaataatctcaaactgttttcatataagctataagctatttt 44422711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 2462906 - 2462938
Alignment:
Q  269 ttatgtataagctatttctataacaacatataa 301  Q
    |||||||||||||||||||||||||| ||||||    
T  2462906 ttatgtataagctatttctataacaaaatataa 2462938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 343
Target Start/End: Original strand, 4548693 - 4548737
Alignment:
Q  300 aataaagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    ||||||||||||||||||| ||| |||| ||||||||||||||||    
T  4548693 aataaagtcaaactgtttttatacaagtcataagctgttttcata 4548737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 318
Target Start/End: Original strand, 15437898 - 15437953
Alignment:
Q  265 gtgtttatgtataagctatttctataac--aacatataataaagtcaaactgtttt 318  Q
    ||||||||||| ||||||||||||||||  || ||| ||| |||||||||||||||    
T  15437898 gtgtttatgtaaaagctatttctataacaaaaaataaaattaagtcaaactgtttt 15437953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 340
Target Start/End: Complemental strand, 36151637 - 36151562
Alignment:
Q  268 tttatgtataagctatttctataac--aacatataataaagtcaaactgtttt-atataagttataagctgttttc 340  Q
    ||||||||||||||||||| |||||  || ||| |||||||||||| ||||||  ||||||||||||  |||||||    
T  36151637 tttatgtataagctatttcaataacaaaagataaaataaagtcaaattgttttcgtataagttataaattgttttc 36151562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 343
Target Start/End: Complemental strand, 37272684 - 37272640
Alignment:
Q  300 aataaagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    ||||||||||| ||||||| ||||||| |||||||||||||||||    
T  37272684 aataaagtcaatctgttttcatataagctataagctgttttcata 37272640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 331
Target Start/End: Complemental strand, 45999417 - 45999354
Alignment:
Q  271 atgtataagctatttctataacaacatata--ataaagtcaaactg-ttttatataagttataa 331  Q
    |||||||||||||||||||||||| | |||  |||||||||||||| ||| ||||||| |||||    
T  45999417 atgtataagctatttctataacaaaagataagataaagtcaaactgctttcatataagctataa 45999354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 263 - 343
Target Start/End: Complemental strand, 5369826 - 5369745
Alignment:
Q  263 aagtgtttatgtataagctatttctataacaacatataataaagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    ||||| |||||||||||||| |||||||| || |  |||||||||||||||||||| ||||| | |||||||||||||||||    
T  5369826 aagtgcttatgtataagctaattctataaaaaaaattaataaagtcaaactgttttcatatatgctataagctgttttcata 5369745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 263 - 350
Target Start/End: Original strand, 49060473 - 49060563
Alignment:
Q  263 aagtgtttatgtataagctatttctataac--aacatataataaagtcaaact-gttttatataagttataagctgttttcatataagcta 350  Q
    |||| |||||||||||||||||||||||||  || ||| |||||||||||| |  ||||||||||| |||||| | |||||||||||||||    
T  49060473 aagtatttatgtataagctatttctataacaaaaaataaaataaagtcaaattatttttatataagctataagttattttcatataagcta 49060563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 269 - 334
Target Start/End: Original strand, 35536046 - 35536114
Alignment:
Q  269 ttatgtataagctatttctataac--aacatataataaagtcaaactgtttt-atataagttataagct 334  Q
    ||||||||||||||||||||||||  || ||| |||||||||||| |||||| ||||||||||||||||    
T  35536046 ttatgtataagctatttctataacataagataaaataaagtcaaattgttttcatataagttataagct 35536114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 328
Target Start/End: Complemental strand, 45593850 - 45593788
Alignment:
Q  269 ttatgtataagctatttctataacaa--catataataaagtcaaactgtttt-atataagtta 328  Q
    ||||||||||||||||||| ||||||  |||| ||||||||||||||||||| ||||||||||    
T  45593850 ttatgtataagctatttctgtaacaaaacataaaataaagtcaaactgttttcatataagtta 45593788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 341
Target Start/End: Original strand, 5373158 - 5373239
Alignment:
Q  263 aagtgtttatgtataagctatttctataac--aacatataataaagt-caaactgttttatataagttataagctgttttca 341  Q
    ||||| ||||||||| ||||||||||||||  || ||| |||||||| |||||  |||||||||||||||||| ||||||||    
T  5373158 aagtgcttatgtatatgctatttctataacaaaagataaaataaagtccaaacatttttatataagttataagttgttttca 5373239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 318
Target Start/End: Original strand, 30496637 - 30496694
Alignment:
Q  263 aagtgtttatgtataagctatttctataacaacatat--aataaagtcaaactgtttt 318  Q
    |||||||||||||||| ||||||||||||||| ||||  |||||||||||| ||||||    
T  30496637 aagtgtttatgtataaactatttctataacaaaatataaaataaagtcaaattgtttt 30496694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 343
Target Start/End: Complemental strand, 5006639 - 5006563
Alignment:
Q  270 tatgtataagctatttctataac--aacatataataaagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    ||||||||||||||| |||||||  || ||| ||||||||||||||||||| ||||||| |||||  ||||||||||    
T  5006639 tatgtataagctattcctataacaaaagataaaataaagtcaaactgttttcatataaggtataaattgttttcata 5006563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 343
Target Start/End: Complemental strand, 9527227 - 9527144
Alignment:
Q  263 aagtgtttatgtataagctatttctataacaaca--tataataaagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    ||||| |||| |||| ||||| |||||||||| |  |||||||||||||||||||||| ||||||  |||||| ||||||||||    
T  9527227 aagtgcttatatatacgctatatctataacaaaagatataataaagtcaaactgttttcatataaactataagttgttttcata 9527144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 343
Target Start/End: Complemental strand, 27481431 - 27481348
Alignment:
Q  263 aagtgtttatgtataagctatttctataacaa--catataataaagtcaaactgttt-tatataagttataagctgttttcata 343  Q
    ||||||||||||||||||||||||||||||||   ||| ||  ||||||||||||||  ||||||| |||||| | ||||||||    
T  27481431 aagtgtttatgtataagctatttctataacaaaggataaaacgaagtcaaactgtttccatataagctataagttattttcata 27481348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 329
Target Start/End: Original strand, 31341133 - 31341196
Alignment:
Q  269 ttatgtataagctatttctataac--aacatataataaagtcaaact-gttttatataagttat 329  Q
    ||||||||||||||||| ||||||  || ||| |||||||||||||| ||||||||||||||||    
T  31341133 ttatgtataagctatttgtataacaaaagataaaataaagtcaaactggttttatataagttat 31341196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 318
Target Start/End: Original strand, 33894556 - 33894612
Alignment:
Q  263 aagtgtttatgtataagctatttctataacaacatataata-aagtcaaactgtttt 318  Q
    ||||| |||||||||||||||||||||||||| | |||| | |||||||||||||||    
T  33894556 aagtgcttatgtataagctatttctataacaaaagataaaataagtcaaactgtttt 33894612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 294
Target Start/End: Complemental strand, 35809046 - 35809010
Alignment:
Q  258 tcatgaagtgtttatgtataagctatttctataacaa 294  Q
    |||| ||||||||||||||||||||||||||||||||    
T  35809046 tcataaagtgtttatgtataagctatttctataacaa 35809010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 343
Target Start/End: Complemental strand, 39551685 - 39551602
Alignment:
Q  263 aagtgtttatgtataagctatttctataac--aacatataataaagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    |||| |||| ||||||||||||||||||||  || ||||| |||||| |||||||||| ||||||| ||||| || ||||||||    
T  39551685 aagtatttaagtataagctatttctataacaaaagatatactaaagtaaaactgttttcatataagctataatctattttcata 39551602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 343
Target Start/End: Original strand, 47004020 - 47004103
Alignment:
Q  263 aagtgtttatgtataagctatttctataaca--acatataataaagtcaaact-gttttatataagttataagctgttttcata 343  Q
    |||||||||| | ||||||||||||||||||  | ||| ||||||||||||||  |||||||| |  |||||||||||||||||    
T  47004020 aagtgtttatatgtaagctatttctataacaatagataaaataaagtcaaactatttttatatgaactataagctgttttcata 47004103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 294
Target Start/End: Original strand, 2223081 - 2223112
Alignment:
Q  263 aagtgtttatgtataagctatttctataacaa 294  Q
    ||||||||||||||||||||||||||||||||    
T  2223081 aagtgtttatgtataagctatttctataacaa 2223112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 343
Target Start/End: Complemental strand, 46223209 - 46223127
Alignment:
Q  263 aagtgtttatgtataagctatttctataacaacatataa--taaagtcaaactgttttatataagttataagctgttttcata 343  Q
    |||||||||||||||||||||||| ||||||| | ||||  ||||||| |||| ||| ||||||  ||  |||||||||||||    
T  46223209 aagtgtttatgtataagctatttccataacaaaagataaattaaagtcgaactatttcatataaactaagagctgttttcata 46223127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 334
Target Start/End: Original strand, 1423079 - 1423152
Alignment:
Q  263 aagtgtttatgtataagctatttctataacaacatataa--taaagtcaaactgttttatataagttataagct 334  Q
    ||||| |||||||||||||||||  ||||||| | ||||  |||| ||||||||||||| |||||||| |||||    
T  1423079 aagtgattatgtataagctattttcataacaaaagataaaataaattcaaactgttttaaataagttagaagct 1423152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 340
Target Start/End: Original strand, 6824858 - 6824931
Alignment:
Q  270 tatgtataagctatttctataac--aacatataataaagtcaaactgtttta-tataagttataagctgttttc 340  Q
    |||||||||||||||||||||||  || ||| || ||||| ||| ||||||| || ||||||||||||||||||    
T  6824858 tatgtataagctatttctataacaaaagatagaacaaagttaaattgttttagtacaagttataagctgttttc 6824931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 341
Target Start/End: Complemental strand, 28340525 - 28340452
Alignment:
Q  271 atgtataagctatttctataacaac--atataataaagtcaaactgtttt-atataagttataagctgttttca 341  Q
    |||||||||||||||||  |||||   ||| ||||||||||||||||||| || ||||||||||| ||||||||    
T  28340525 atgtataagctatttcttcaacaaacaataaaataaagtcaaactgttttcatgtaagttataagttgttttca 28340452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 340
Target Start/End: Original strand, 2894750 - 2894830
Alignment:
Q  263 aagtgtttatgtataagctatttctataacaacatataa--taaagtcaaactgtttt-atataagttataagctgttttc 340  Q
    ||||||| |||||||||||||||||||||||| | ||||  ||||||  ||||||||| |  ||||||||||||| |||||    
T  2894750 aagtgttcatgtataagctatttctataacaaaagataaattaaagttgaactgttttcaagtaagttataagctattttc 2894830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 307
Target Start/End: Complemental strand, 3836794 - 3836753
Alignment:
Q  266 tgtttatgtataagctatttctataacaacatataataaagt 307  Q
    ||||||||||||||||||||||||||||| ||| ||| ||||    
T  3836794 tgtttatgtataagctatttctataacaagataaaatcaagt 3836753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 318
Target Start/End: Complemental strand, 45344529 - 45344480
Alignment:
Q  269 ttatgtataagctatttctataacaacatataataaagtcaaactgtttt 318  Q
    |||||||||||||||||||| ||||| ||| || ||||||||| ||||||    
T  45344529 ttatgtataagctatttctacaacaagataaaacaaagtcaaattgtttt 45344480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 343
Target Start/End: Original strand, 46081966 - 46082050
Alignment:
Q  263 aagtgtttatgtataagctatttctataac--aacatataataaagtc-aaactgtttt-atataagttataagctgttttcata 343  Q
    ||||| |||| |||||||||||||||||||  ||  || || |||||| |||||||||| |||||||||||||| ||||||||||    
T  46081966 aagtgattatatataagctatttctataacgaaagttaaaacaaagtcaaaactgttttcatataagttataagttgttttcata 46082050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 349
Target Start/End: Original strand, 47510100 - 47510129
Alignment:
Q  320 tataagttataagctgttttcatataagct 349  Q
    ||||||||||||||||||||||||||||||    
T  47510100 tataagttataagctgttttcatataagct 47510129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 343
Target Start/End: Original strand, 1417201 - 1417280
Alignment:
Q  267 gtttatgtataagctatttctataac--aacatataataaagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    |||||||||||| |||||| ||||||  || ||| |||||||||||| |||||| |||||||  ||||| ||||||||||    
T  1417201 gtttatgtataaactatttatataacaaaagataaaataaagtcaaattgttttcatataagcaataagttgttttcata 1417280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 291
Target Start/End: Original strand, 27389316 - 27389344
Alignment:
Q  263 aagtgtttatgtataagctatttctataa 291  Q
    |||||||||||||||||||||||||||||    
T  27389316 aagtgtttatgtataagctatttctataa 27389344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 343
Target Start/End: Original strand, 29363490 - 29363534
Alignment:
Q  300 aataaagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    ||||||||||||||||||| |||| |||||||||||||| |||||    
T  29363490 aataaagtcaaactgttttcatattagttataagctgttatcata 29363534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 343
Target Start/End: Original strand, 31338480 - 31338524
Alignment:
Q  300 aataaagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    ||||||||||||||||||| |||||||||||||| ||||| ||||    
T  31338480 aataaagtcaaactgtttttatataagttataagttgtttccata 31338524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 343
Target Start/End: Original strand, 44821931 - 44821975
Alignment:
Q  300 aataaagtcaaactgtttta-tataagttataagctgttttcata 343  Q
    |||||||||||| ||||||  ||||||||||||||||||||||||    
T  44821931 aataaagtcaaattgtttttgtataagttataagctgttttcata 44821975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 291
Target Start/End: Complemental strand, 47528070 - 47528042
Alignment:
Q  263 aagtgtttatgtataagctatttctataa 291  Q
    |||||||||||||||||||||||||||||    
T  47528070 aagtgtttatgtataagctatttctataa 47528042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 269 - 343
Target Start/End: Complemental strand, 26209543 - 26209467
Alignment:
Q  269 ttatgtataagctatttctataacaacatataataaagtcaaactgtttt--atataagttataagctgttttcata 343  Q
    ||||||||||| |||||||||||||| ||| ||||||||| || ||||||  ||||||| |||||||||||||||||    
T  26209543 ttatgtataagttatttctataacaagataaaataaagtccaattgttttcaatataagctataagctgttttcata 26209467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 263 - 343
Target Start/End: Complemental strand, 32059725 - 32059643
Alignment:
Q  263 aagtgtttatgtataagctatttctataac-aacatataataaagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    ||||| ||||||||||||| ||| | |||| || ||| ||||||||||||||||||| ||||||| |||||||||||||||||    
T  32059725 aagtgcttatgtataagctgtttttgtaactaagataaaataaagtcaaactgttttcatataagctataagctgttttcata 32059643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 340
Target Start/End: Original strand, 14295454 - 14295519
Alignment:
Q  278 agctatttctataacaacatataa--taaagtcaaactgtttt-atataagttataagctgttttc 340  Q
    ||||||||||||||||| | ||||  ||||||||||||||||| ||||||| ||||||||||||||    
T  14295454 agctatttctataacaaaagataaaataaagtcaaactgttttcatataagctataagctgttttc 14295519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 343
Target Start/End: Original strand, 16889674 - 16889751
Alignment:
Q  269 ttatgtataagctatttctataacaacatataa--taaagtcaaactg-ttttatataagttataagctgttttcata 343  Q
    |||||||||||||||||| ||||||| | ||||  | ||||||||||| ||||||| ||| |||||||||||||||||    
T  16889674 ttatgtataagctatttccataacaaaagataaacttaagtcaaactgtttttatagaagctataagctgttttcata 16889751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 339
Target Start/End: Complemental strand, 28586897 - 28586824
Alignment:
Q  269 ttatgtataagctatttctataacaacatataa--taaagtcaaactgtttt-atataagttataagctgtttt 339  Q
    |||||||||  ||||||||||||||| | ||||  ||||||||||||||||| |||||| ||||||||||||||    
T  28586897 ttatgtatacactatttctataacaaaagataaaataaagtcaaactgttttcatataaattataagctgtttt 28586824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 263 - 332
Target Start/End: Complemental strand, 35135799 - 35135727
Alignment:
Q  263 aagtgtttatgtataagctatttctataac--aacatataataaagtcaaactgtttt-atataagttataag 332  Q
    ||||||||||||||||| ||||||||||||  || ||| |||||||||||||| |||| ||||||| ||||||    
T  35135799 aagtgtttatgtataagatatttctataacaaaagataaaataaagtcaaactattttcatataagctataag 35135727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 343
Target Start/End: Complemental strand, 18704166 - 18704090
Alignment:
Q  269 ttatgtataagctatttctataacaacatat-aataaagtcaaact-gttttatataagttataagctgttttcata 343  Q
    ||||||||||| |||||||||||||| | || ||||||||||| ||  ||||||||||| |||||| ||||||||||    
T  18704166 ttatgtataagttatttctataacaaaagataaataaagtcaagctatttttatataagctataagttgttttcata 18704090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 343
Target Start/End: Complemental strand, 18857537 - 18857454
Alignment:
Q  263 aagtgtttatgtataagctatttctataaca-ac-atataataaagtcaaactg-ttttatataagttataagctgttttcata 343  Q
    ||||||||||| |||||||||||| |||||| || ||| |||||||||||| || |||| |||||  |||||||||||||||||    
T  18857537 aagtgtttatgaataagctatttcaataacacacgataaaataaagtcaaattgtttttctataatctataagctgttttcata 18857454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 301
Target Start/End: Original strand, 29588813 - 29588851
Alignment:
Q  263 aagtgtttatgtataagctatttctataacaacatataa 301  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  29588813 aagtgcttatgtataagctatttctataacaaaatataa 29588851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 338
Target Start/End: Complemental strand, 14599436 - 14599362
Alignment:
Q  269 ttatgtataagctatttctataacaaca----tataataaagtcaaactgtttt-atataagttataagctgttt 338  Q
    |||||| ||||||||||||||||||| |    || ||| ||||||||||||||| |||||||||||||| |||||    
T  14599436 ttatgtttaagctatttctataacaaaactgataaaattaagtcaaactgttttcatataagttataagttgttt 14599362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 317
Target Start/End: Complemental strand, 21782706 - 21782650
Alignment:
Q  263 aagtgtttatgtataagctatttctataacaaca--tataataaagtcaaactgttt 317  Q
    |||||||||||| ||||||||||||||||||| |  || |||||||||||| |||||    
T  21782706 aagtgtttatgtttaagctatttctataacaaaagctaaaataaagtcaaattgttt 21782650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 343
Target Start/End: Complemental strand, 42583469 - 42583396
Alignment:
Q  271 atgtataagctatttctataacaacatataataaagtcaaactgttt-tatataagttataagctgttttcata 343  Q
    |||||||||| |||||||||||||   |||| | ||| ||||||||| | |||| |||||||||||||||||||    
T  42583469 atgtataagccatttctataacaaaggataaaatagttaaactgtttatgtatatgttataagctgttttcata 42583396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 343
Target Start/End: Original strand, 1619034 - 1619106
Alignment:
Q  272 tgtataagctatttctataacaacatataataaagtcaaactgttt-tatataagttataagctgttttcata 343  Q
    ||||||||||||||||| ||||| | |||||||||| ||| | |||   |||||| |||||||||||||||||    
T  1619034 tgtataagctatttctaaaacaaaaaataataaagttaaattctttccgtataagctataagctgttttcata 1619106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 7096264 - 7096213
Alignment:
Q  263 aagtgtttatgtataagctatttctataac--aacatataataaagtcaaac 312  Q
    ||||| ||||||||||||||||||||||||  || ||| |||||||||||||    
T  7096264 aagtgcttatgtataagctatttctataacaaaagataaaataaagtcaaac 7096213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 325
Target Start/End: Original strand, 12521490 - 12521546
Alignment:
Q  269 ttatgtataagctatttctataacaacatataataaagtcaaactgttttatataag 325  Q
    ||||||||||| | ||||||||||||  || |||| |||||||||||||| ||||||    
T  12521490 ttatgtataagttgtttctataacaaactaaaatagagtcaaactgttttgtataag 12521546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 294
Target Start/End: Original strand, 13224361 - 13224393
Alignment:
Q  262 gaagtgtttatgtataagctatttctataacaa 294  Q
    |||||| ||||||||||||||||||||||||||    
T  13224361 gaagtgcttatgtataagctatttctataacaa 13224393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 318
Target Start/End: Original strand, 38338268 - 38338312
Alignment:
Q  274 tataagctatttctataacaacatataataaagtcaaactgtttt 318  Q
    ||||||||| ||||||||||| ||| ||||||||||||| |||||    
T  38338268 tataagctagttctataacaaaataaaataaagtcaaaccgtttt 38338312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 343
Target Start/End: Complemental strand, 41277448 - 41277404
Alignment:
Q  300 aataaagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    ||||||||||||||||||| |||||||||| ||| ||||||||||    
T  41277448 aataaagtcaaactgttttcatataagttaaaagttgttttcata 41277404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 266 - 338
Target Start/End: Complemental strand, 33500615 - 33500540
Alignment:
Q  266 tgtttatgtataagctatttctataacaacatataa--taaagtcaaactgttt-tatataagttataagctgttt 338  Q
    ||||||||||||||||||||||||||||| | ||||  |||| |||||||||||  ||||||||||||||||||||    
T  33500615 tgtttatgtataagctatttctataacaaaagataaagtaaaatcaaactgtttcaatataagttataagctgttt 33500540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 343
Target Start/End: Complemental strand, 33787877 - 33787799
Alignment:
Q  268 tttatgtataagctatttctataacaacatat--aataaagtcaaactg-ttttatataagttataagctgttttcata 343  Q
    ||||||||||| ||||||||||||||| ||||  || ||||||||| || ||| |||||||||||||||||||||||||    
T  33787877 tttatgtataaactatttctataacaaaatataaaacaaagtcaaattgatttcatataagttataagctgttttcata 33787799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 343
Target Start/End: Original strand, 6647323 - 6647403
Alignment:
Q  264 agtgtttatgtataagctatttctataacaacatataataaagtcaaact-gttttatataagttataagctgttttcata 343  Q
    |||| ||||||||||| |||||||||||||| | |||||||||||||| |  ||| ||||| ||||||| |||||||||||    
T  6647323 agtgcttatgtataagttatttctataacaaaaaataataaagtcaaattactttaatataggttataatctgttttcata 6647403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 264 - 343
Target Start/End: Complemental strand, 10452496 - 10452414
Alignment:
Q  264 agtgtttatgtataagctatttctataacaacatat--aataaagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    |||| |||||||||||||||||||||||||| ||||  |||||| ||||||| |||| ||||||| |||||| ||||| ||||    
T  10452496 agtgcttatgtataagctatttctataacaaaatataaaataaaatcaaactattttcatataagctataagttgtttccata 10452414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 343
Target Start/End: Complemental strand, 33911418 - 33911336
Alignment:
Q  263 aagtgtttatgtataagctatttctataacaacatat--aataaagtcaaactgttttatataagttataagctgttttcata 343  Q
    |||||||||||||||| |||||| |||||||| | ||  |||||||| |||||| |  |||||| ||||||||||||||||||    
T  33911418 aagtgtttatgtataatctatttttataacaaaagatcaaataaagttaaactgatccatataatttataagctgttttcata 33911336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 343
Target Start/End: Complemental strand, 29274360 - 29274283
Alignment:
Q  269 ttatgtataagctatttctata--acaacatataataaagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    ||||||||||||||||||||||  | || ||| |||||||||||| |||||| ||||||| ||||| |||||||||||    
T  29274360 ttatgtataagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagctataaactgttttcata 29274283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 263 - 317
Target Start/End: Original strand, 32975911 - 32975967
Alignment:
Q  263 aagtgtttatgtataagctatttctataacaacatat--aataaagtcaaactgttt 317  Q
    ||||||||||||||||| ||||||| |||||| ||||  ||||||||||||||||||    
T  32975911 aagtgtttatgtataagttatttctgtaacaaaatataaaataaagtcaaactgttt 32975967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 343
Target Start/End: Original strand, 4006647 - 4006730
Alignment:
Q  263 aagtgtttatgtataagctatttctataacaac--atataataaagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    ||||| ||||| ||||| ||||||||||||||   ||| |||||||||||| |||||| ||||||| |||||| ||||||||||    
T  4006647 aagtgcttatgcataagatatttctataacaaatgataaaataaagtcaaattgtttttatataagctataagttgttttcata 4006730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 343
Target Start/End: Complemental strand, 22691652 - 22691574
Alignment:
Q  266 tgtttatgtataagctatttctataacaacatataataaagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    ||||||||| |||||||||| | |||||| |||  ||||| ||||| |||||| ||||||||||||| || ||||||||    
T  22691652 tgtttatgtgtaagctatttttgtaacaagataacataaattcaaattgttttcatataagttataacctattttcata 22691574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 318
Target Start/End: Original strand, 24774691 - 24774748
Alignment:
Q  263 aagtgtttatgtataagctatttctataacaacatat--aataaagtcaaactgtttt 318  Q
    ||||| |||| ||||| ||||||||||||||| ||||  |||||||||||||||||||    
T  24774691 aagtgcttatatataaactatttctataacaaaatataaaataaagtcaaactgtttt 24774748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 338
Target Start/End: Complemental strand, 4247771 - 4247694
Alignment:
Q  263 aagtgtttatgtataagctatttctataacaacatat-aataaagtcaaactgtt-ttatataagttataagctgttt 338  Q
    ||||| |||||||||||||||||||||||||| | || || ||| |||||||||| | ||| |||| |||||||||||    
T  4247771 aagtgcttatgtataagctatttctataacaaaagataaaaaaattcaaactgttgtcataaaagtaataagctgttt 4247694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 345
Target Start/End: Original strand, 5550105 - 5550150
Alignment:
Q  301 ataaagtcaaactgtttt-atataagttataagctgttttcatata 345  Q
    ||||||||||| |||||| ||||||| |||||||||||||||||||    
T  5550105 ataaagtcaaattgttttcatataagctataagctgttttcatata 5550150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 339
Target Start/End: Original strand, 323744 - 323823
Alignment:
Q  263 aagtgtttatgtataagctatttctata--acaacatataataaagtcaaactgtttt-atataagttataagctgtttt 339  Q
    ||||| || |||||||||||||||||||  | || ||| |||||| |||||||||||| ||||||||||| |||| ||||    
T  323744 aagtggttttgtataagctatttctatattaaaagataaaataaattcaaactgttttcatataagttatgagctatttt 323823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 343
Target Start/End: Original strand, 2514635 - 2514718
Alignment:
Q  263 aagtgtttatgtataagctatttctata--acaacatataataaagtcaaact-gttttatataagttataagctgttttcata 343  Q
    ||||| ||||||||||||||||||||||  | || ||| ||||||||||||||  |||||||| || |||||| | ||||||||    
T  2514635 aagtgcttatgtataagctatttctataataaaagataaaataaagtcaaactaattttatatgagctataagttattttcata 2514718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 317
Target Start/End: Original strand, 4420555 - 4420606
Alignment:
Q  268 tttatgtataagctatttctataac--aacatataataaagtcaaactgttt 317  Q
    ||||||||||||||| |||||||||  || ||| ||||||||||||||||||    
T  4420555 tttatgtataagctacttctataacaaaagataaaataaagtcaaactgttt 4420606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 310
Target Start/End: Original strand, 8010290 - 8010338
Alignment:
Q  263 aagtgtttatgtataagctatttctataacaac-atataataaagtcaa 310  Q
    ||||| ||| ||||||||||||||||||||||| ||| |||||||||||    
T  8010290 aagtgcttaggtataagctatttctataacaacaataaaataaagtcaa 8010338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 335
Target Start/End: Original strand, 9027510 - 9027585
Alignment:
Q  263 aagtgtttatgtataagctatttctataaca--acatataataaagtcaaactgtttt-atataagttataagctg 335  Q
    ||||| |||| ||||||||||||||| || |  | ||| ||||||||||||||||||| |||||||| ||||||||    
T  9027510 aagtgcttatctataagctatttctacaatagaagataaaataaagtcaaactgttttaatataagtaataagctg 9027585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 343
Target Start/End: Original strand, 10154193 - 10154237
Alignment:
Q  300 aataaagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    ||||||||||||||||||| ||||||||||||||||  |||||||    
T  10154193 aataaagtcaaactgttttcatataagttataagctactttcata 10154237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 31564816 - 31564768
Alignment:
Q  270 tatgtataagctatttctataacaacatataataaagtcaaactgtttt 318  Q
    |||||||||||||||| |||||||| ||| ||| |||||| ||||||||    
T  31564816 tatgtataagctatttttataacaagataaaatgaagtcacactgtttt 31564768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 269 - 343
Target Start/End: Original strand, 11795031 - 11795108
Alignment:
Q  269 ttatgtataagctatttctataacaa--catataataaagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    ||||||||||||| ||||||| ||||  |||| |||||||||| |||||||| ||||||||||||||||| |||||||    
T  11795031 ttatgtataagctttttctatgacaaaacatacaataaagtcacactgttttcatataagttataagctgatttcata 11795108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 275 - 343
Target Start/End: Complemental strand, 6509426 - 6509357
Alignment:
Q  275 ataagctatttctataacaacatataataaagtcaaactgt-tttatataagttataagctgttttcata 343  Q
    ||||| ||| |||||||||| ||| |||||||||||| ||| |||||||||| |||||||||||||||||    
T  6509426 ataagttatatctataacaagataaaataaagtcaaattgtatttatataagctataagctgttttcata 6509357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 344
Target Start/End: Original strand, 9699940 - 9700018
Alignment:
Q  269 ttatgtataagctatttctataacaaca--tataataaagtcaaactgtttt-atataagttataagctgttttcatat 344  Q
    |||||||||||||||||| ||||||| |  || ||||| |||||| |||||| | |||| |||||||||||||||||||    
T  9699940 ttatgtataagctatttcgataacaaaagttaaaataaggtcaaattgttttcaaataaattataagctgttttcatat 9700018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 343
Target Start/End: Complemental strand, 28769470 - 28769393
Alignment:
Q  269 ttatgtataagctatttctataacaa--catataataaagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    |||||||||||||||| |||||||||   ||| ||| |||||||||| ||||  |||||| |||||||||||||||||    
T  28769470 ttatgtataagctattcctataacaaactataaaattaagtcaaactattttcttataagctataagctgttttcata 28769393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 318
Target Start/End: Original strand, 5290574 - 5290626
Alignment:
Q  263 aagtgtttatgtataagctatttctataacaacatataataaagtcaaactgtttt 318  Q
    ||||| ||||||||||||||||||||||||||   |||| | ||||||||||||||    
T  5290574 aagtgcttatgtataagctatttctataacaa---ataaaatagtcaaactgtttt 5290626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 343
Target Start/End: Complemental strand, 1470985 - 1470910
Alignment:
Q  271 atgtataagctatttctataacaacatataa--taaagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    ||||||||||||||||||||| || | ||||  |||||||||| |  ||| ||||||| |||||||||||||||||    
T  1470985 atgtataagctatttctataataaaagataaaataaagtcaaattactttcatataagctataagctgttttcata 1470910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 291
Target Start/End: Original strand, 4558731 - 4558759
Alignment:
Q  263 aagtgtttatgtataagctatttctataa 291  Q
    |||||||||||||||||||||||||||||    
T  4558731 aagtgtttatgtataagctatttctataa 4558759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 318
Target Start/End: Complemental strand, 8536185 - 8536129
Alignment:
Q  263 aagtgtttatgtataagctatttctataacaacatataa-taaagtcaaactgtttt 318  Q
    ||||| |||||||||||||||||||||||||| ||| || | |||||||| ||||||    
T  8536185 aagtgcttatgtataagctatttctataacaaaataaaagtgaagtcaaattgtttt 8536129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 343
Target Start/End: Complemental strand, 9836979 - 9836908
Alignment:
Q  275 ataagctatttctataacaacatataa--taaagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    ||||||||||| |||||||||  ||||  |||||||||||| |||| |||||||||| || |||||||||||    
T  9836979 ataagctatttttataacaactgataaagtaaagtcaaactattttcatataagttacaacctgttttcata 9836908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 343
Target Start/End: Complemental strand, 10075681 - 10075605
Alignment:
Q  270 tatgtataagctatttctataa-caacatataa-taaagtcaaact-gttttatataagttataagctgttttcata 343  Q
    |||||||||||||||| |||||  || | |||| ||||||||||||  |||||||||||||||||||| ||||||||    
T  10075681 tatgtataagctatttgtataataaaaacataattaaagtcaaactatttttatataagttataagctattttcata 10075605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 26716573 - 26716525
Alignment:
Q  263 aagtgtttatgtataagctatttctataacaacatataataaagtcaaa 311  Q
    ||||| |||||||||||||| ||||||||||| ||  ||||||||||||    
T  26716573 aagtgcttatgtataagctacttctataacaagattaaataaagtcaaa 26716525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 29699193 - 29699268
Alignment:
Q  269 ttatgtataagctatttctataacaacatataa--taaagtcaaactgtttt-atataagttataagctgttttca 341  Q
    ||||||| ||| |||||||||||||| | ||||  |||||||||| |||| | || ||||||||||||||||||||    
T  29699193 ttatgtacaagttatttctataacaaaagataaaataaagtcaaaatgttgtcatctaagttataagctgttttca 29699268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 339
Target Start/End: Complemental strand, 30988129 - 30988050
Alignment:
Q  263 aagtgtttatgtataagctatttctataacaacatataa--taaagtcaaactg-ttttatataagttataagctgtttt 339  Q
    |||| ||| |||||||  |||||| ||||||| ||||||  |||| |||||||| ||||| |||||||||||||||||||    
T  30988129 aagtttttttgtataatttatttcaataacaagatataaaataaaatcaaactgcttttaaataagttataagctgtttt 30988050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 340
Target Start/End: Original strand, 34236135 - 34236175
Alignment:
Q  300 aataaagtcaaactgttttatataagttataagctgttttc 340  Q
    |||||||| |||||||||| ||| |||||||||||||||||    
T  34236135 aataaagttaaactgttttgtatgagttataagctgttttc 34236175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 43208270 - 43208226
Alignment:
Q  263 aagtgtttatgtataagctatttctataacaacatataataaagt 307  Q
    |||| ||||||||||||||||||||||||||| |||  |||||||    
T  43208270 aagtatttatgtataagctatttctataacaagatactataaagt 43208226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 267 - 343
Target Start/End: Original strand, 29430693 - 29430771
Alignment:
Q  267 gtttatgtataagctatttctataacaaca-tataataaagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    |||||||||||||||||||||||||||| | |  |||||||||||||||||||  |||||| ||||||||||| |||||    
T  29430693 gtttatgtataagctatttctataacaaaagttaaataaagtcaaactgttttcttataagctataagctgttctcata 29430771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 262 - 343
Target Start/End: Complemental strand, 29503219 - 29503137
Alignment:
Q  262 gaagtgtttatgtataagctatttctataacaacatataataaagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    |||||||||||||||| | |||||||||||||| ||| |||||||||||||| |||| | | |||||||||| ||||| ||||    
T  29503219 gaagtgtttatgtatatgatatttctataacaagataaaataaagtcaaactattttcaaagaagttataagatgtttccata 29503137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 263 - 345
Target Start/End: Complemental strand, 3235519 - 3235436
Alignment:
Q  263 aagtgtttatgtataagctatttctataacaacat--ataataaagtcaaactgttttatataagttataagctgttttcatata 345  Q
    ||||| |||||||| |||||||| |||||||| ||  | |||||||||||||||||| ||||||  |||||||||||||||||||    
T  3235519 aagtgcttatgtattagctatttttataacaa-atgaaaaataaagtcaaactgtttcatataaactataagctgttttcatata 3235436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 263 - 371
Target Start/End: Original strand, 10143105 - 10143214
Alignment:
Q  263 aagtgtttatgtataagctatttctataac--aacatataataaagtcaaactg-ttttatataagttataagctgttttcatataagctaccataaaga 359  Q
    ||||| ||||||||||| ||||||||||||  || ||| ||| ||||||||||| ||||||||||| |||||| | |||||  |||||||| |||  |||    
T  10143105 aagtgcttatgtataagttatttctataacaaaagataaaattaagtcaaactgtttttatataagctataagtttttttc--ataagctatcatggaga 10143202  T
Q  360 gtttatggatat 371  Q
    ||||||||||||    
T  10143203 gtttatggatat 10143214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 5133711 - 5133786
Alignment:
Q  269 ttatgtataagctatttctataac--aacatataataaagtcaaactg-ttttatataagttataagctgttttca 341  Q
    ||||||||||||||||||||||||  || ||| |||||||  |||||| ||||||||||| |||||||||||||||    
T  5133711 ttatgtataagctatttctataacaaaagataaaataaagataaactgtttttatataagatataagctgttttca 5133786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 339
Target Start/End: Complemental strand, 7103612 - 7103541
Alignment:
Q  269 ttatgtataagctatttctataacaacatataataaagtcaaactgtttt-atataagttataagctgtttt 339  Q
    ||||||| || |||| | |||||||| ||| ||||||||||||||||||| ||||||| |||||||||||||    
T  7103612 ttatgtagaaactatatttataacaagataaaataaagtcaaactgttttaatataagctataagctgtttt 7103541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 342
Target Start/End: Original strand, 37053527 - 37053609
Alignment:
Q  263 aagtgtttatgtataagctatttctataac--aacatataataaagtcaaactgtttt-atataagttataagctgttttcat 342  Q
    ||||| |||||||||  |||||||||||||  || ||| ||||||||||||||||||| |||||||||||||| | |||||||    
T  37053527 aagtgcttatgtatagactatttctataacagaaaataaaataaagtcaaactgttttcatataagttataagtttttttcat 37053609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 368
Target Start/End: Complemental strand, 1742157 - 1742063
Alignment:
Q  275 ataagctatttctataacaacatataata--aagtcaaactgttt-tatataagttataagctgttttcatataagctaccataaagagtttatgga 368  Q
    |||| ||||||||||||||| |||||| |  |||||||||| ||| |||||||| ||||||||||||||  |||| ||| ||| |||||||||||||    
T  1742157 ataaactatttctataacaaaatataaaatgaagtcaaactctttatatataagatataagctgttttc--ataatctatcatgaagagtttatgga 1742063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 343
Target Start/End: Complemental strand, 35755639 - 35755556
Alignment:
Q  263 aagtgtttatgtataagctatttctataa--caacatataataaagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    |||||||||||||||||||||||||||||   || | | |||||||||||| |||||| || |||| |||||| ||||||||||    
T  35755639 aagtgtttatgtataagctatttctataatcaaatagaaaataaagtcaaattgttttcatgtaagctataagttgttttcata 35755556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 342
Target Start/End: Original strand, 3673740 - 3673822
Alignment:
Q  263 aagtgtttatgtataagctatttctataacaacatat--aataaagtcaaactgtttt-atataagttataagctgttttcat 342  Q
    ||||| |||||||| || |||||||||||||| ||||  |||||||| ||| |||||| |||||||||||||| | |||||||    
T  3673740 aagtgcttatgtattagttatttctataacaaaatataaaataaagttaaattgttttcatataagttataagtttttttcat 3673822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 294
Target Start/End: Original strand, 13864583 - 13864614
Alignment:
Q  263 aagtgtttatgtataagctatttctataacaa 294  Q
    ||||||||||||||||||||||||||||||||    
T  13864583 aagtgtttatgtataagctatttctataacaa 13864614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 341
Target Start/End: Complemental strand, 14278031 - 14277949
Alignment:
Q  263 aagtgtttatgtataagctatttctataac--aacatataataaagtc-aaactgtttt-atataagttataagctgttttca 341  Q
    ||||| |||||||||| |||||||||||||  |||||  ||||||||| |||||||||| |||||||||||| | ||||||||    
T  14278031 aagtgcttatgtataaactatttctataactaaacattaaataaagtcaaaactgttttcatataagttatatgttgttttca 14277949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 294
Target Start/End: Complemental strand, 38239688 - 38239657
Alignment:
Q  263 aagtgtttatgtataagctatttctataacaa 294  Q
    ||||||||||||||||||||||||||||||||    
T  38239688 aagtgtttatgtataagctatttctataacaa 38239657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 343
Target Start/End: Original strand, 3102632 - 3102709
Alignment:
Q  269 ttatgtataagctatttctataacaacatat--aataaagtcaaact-gttttatataagttataagctgttttcata 343  Q
    ||||||||||||||||| |||| ||| ||||  ||||||||||||||  ||||||||||  ||| |||||||||||||    
T  3102632 ttatgtataagctatttttatagcaaaatataaaataaagtcaaactatttttatataatctattagctgttttcata 3102709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 293
Target Start/End: Original strand, 9478232 - 9478262
Alignment:
Q  263 aagtgtttatgtataagctatttctataaca 293  Q
    |||||||||||||||||||||||||||||||    
T  9478232 aagtgtttatgtataagctatttctataaca 9478262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 343
Target Start/End: Complemental strand, 17952832 - 17952755
Alignment:
Q  269 ttatgtataagctatttctataac--aacatataataaagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    |||| |||||||||||||||||||  || ||| |||||||||||||| |||| ||||||| || ||| ||||||||||    
T  17952832 ttatatataagctatttctataacaaaagataaaataaagtcaaactattttcatataagctacaagatgttttcata 17952755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 343
Target Start/End: Complemental strand, 39341218 - 39341139
Alignment:
Q  269 ttatgtataagctatttctataacaacatat----aataaagtcaaactgtttta-tataagttataagctgttttcata 343  Q
    |||||||| || |||||||||||||| ||||    |||||||| ||||||||||  ||||||||||||||||||| ||||    
T  39341218 ttatgtatgagttatttctataacaaaatattaaaaataaagttaaactgttttggtataagttataagctgtttacata 39341139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 317
Target Start/End: Complemental strand, 5045294 - 5045238
Alignment:
Q  263 aagtgtttatgtataagctatttctataac--aacatataataaagtcaaactgttt 317  Q
    ||||||||||||||||||||||| ||||||  || ||| ||||||||||| ||||||    
T  5045294 aagtgtttatgtataagctatttttataacaaaagataaaataaagtcaagctgttt 5045238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 343
Target Start/End: Original strand, 39621892 - 39621967
Alignment:
Q  269 ttatgtataagctatttctata--acaacatataataaagtcaaactgttttatataagttataagctgttttcata 343  Q
    ||||| ||||| ||||||||||  |||| ||| |||||||||||||| |||| |||||  |||||||||||||||||    
T  39621892 ttatgaataagatatttctataacacaaaataaaataaagtcaaact-ttttgtataatctataagctgttttcata 39621967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 331
Target Start/End: Original strand, 33192126 - 33192197
Alignment:
Q  263 aagtgtttatgtataagctatttctataaca--acatataataaagtcaaactgtttt-atataagttataa 331  Q
    ||||| |||| || || ||||||||||||||  | ||| ||||||||||||||||||| |||||||||||||    
T  33192126 aagtgcttatataaaaactatttctataacataagataaaataaagtcaaactgttttcatataagttataa 33192197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 343
Target Start/End: Complemental strand, 34055038 - 34054955
Alignment:
Q  263 aagtgtttatgtataagctatttctataac--aacatataataaagtcaaactgttt-tatataagttataagctgttttcata 343  Q
    ||||| ||||||||| ||||||||||||||  || ||| ||||||| ||||||||||  ||||| | |||||| ||||||||||    
T  34055038 aagtgcttatgtataggctatttctataacaaaagataaaataaaggcaaactgtttacatatatgatataaggtgttttcata 34054955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 343
Target Start/End: Original strand, 37276722 - 37276762
Alignment:
Q  304 aagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    ||||||||||||||| |||||||||||||| ||||||||||    
T  37276722 aagtcaaactgttttcatataagttataagttgttttcata 37276762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 263 - 343
Target Start/End: Complemental strand, 32920535 - 32920454
Alignment:
Q  263 aagtgtttatgtataagctatttctataacaacatataataaagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    ||||||||||| ||||||||||| |||||||| ||| ||||||||||||  ||||| ||| ||| |||||| ||||||||||    
T  32920535 aagtgtttatggataagctatttttataacaagataaaataaagtcaaatcgttttaatagaagctataagttgttttcata 32920454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 343
Target Start/End: Original strand, 35958593 - 35958671
Alignment:
Q  268 tttatgtataagctatttctataac--aacatataataaagtcaaa-ctgttttatataagttataagctgttttcata 343  Q
    |||||||||||||||||||||||||  ||  || ||||||||||||  ||||||||||||| || ||||||||||||||    
T  35958593 tttatgtataagctatttctataacataagttaaaataaagtcaaatttgttttatataagctagaagctgttttcata 35958671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 343
Target Start/End: Original strand, 23819023 - 23819105
Alignment:
Q  263 aagtgtttatgtataagctatttctataac-aacatataataaagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    ||||||||||||||||| |||||| ||||| || ||| |||  |||||||||||||| |||||||||||||  ||||||||||    
T  23819023 aagtgtttatgtataagttatttccataacaaatataaaatgtagtcaaactgttttcatataagttataacatgttttcata 23819105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 263 - 340
Target Start/End: Complemental strand, 42322016 - 42321936
Alignment:
Q  263 aagtgtttatgtataagctatttctataacaa--catataataaagtcaaactgtttt-atataagttataagctgttttc 340  Q
    ||||||||||| ||||||||||| ||||||||   ||| |||||||||||| |||||| |||||| ||||||| |||||||    
T  42322016 aagtgtttatgaataagctatttttataacaaatgataaaataaagtcaaattgttttcatataaattataagttgttttc 42321936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 51044596 - 51044544
Alignment:
Q  263 aagtgtttatgtataagctatttctataac--aacatataataaagtcaaact 313  Q
    ||||||||||||||||||||||||||||||  || ||| ||||||||||||||    
T  51044596 aagtgtttatgtataagctatttctataacaaaagataaaataaagtcaaact 51044544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 318
Target Start/End: Original strand, 4191672 - 4191730
Alignment:
Q  263 aagtgtttatgtataagctatttctataacaacatat---aataaagtcaaactgtttt 318  Q
    ||||| |||||||||||||||||||||||||| | ||   |||||||||||||||||||    
T  4191672 aagtgcttatgtataagctatttctataacaaaagataaaaataaagtcaaactgtttt 4191730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 334
Target Start/End: Original strand, 21952906 - 21952968
Alignment:
Q  275 ataagctatttctataacaaca--tataataaagtcaaactgtttt-atataagttataagct 334  Q
    ||||||||||||||||||||||  || |||||||||||| |||||| ||||||| ||||||||    
T  21952906 ataagctatttctataacaacaagtaaaataaagtcaaattgttttcatataagctataagct 21952968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 343
Target Start/End: Original strand, 49219073 - 49219155
Alignment:
Q  264 agtgtttatgtataagctatttctataacaacatat--aataaagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    |||| ||| ||||||| |||||||||||||| ||||  |||||||||||| | |||| ||||||| |||||| ||||||||||    
T  49219073 agtggttaggtataagttatttctataacaaaatataaaataaagtcaaattattttcatataagctataagttgttttcata 49219155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 318
Target Start/End: Complemental strand, 54462235 - 54462180
Alignment:
Q  263 aagtgtttatgtataagctatttctataacaacatataataaagtcaaactgtttt 318  Q
    ||||| ||||||| |||||||||||||||||| ||  |||||||||||||| ||||    
T  54462235 aagtgcttatgtaaaagctatttctataacaagatgaaataaagtcaaactatttt 54462180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 339
Target Start/End: Complemental strand, 30338723 - 30338650
Alignment:
Q  269 ttatgtataagctatttctataac--aacatataataaagtcaaactgtttt-atataagttataagctgtttt 339  Q
    |||||||||| |||||||||||||  || ||| |||||||| |||||||||| ||||||| ||||| |||||||    
T  30338723 ttatgtataaactatttctataacaaaagatagaataaagttaaactgttttcatataagctataaactgtttt 30338650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 341
Target Start/End: Complemental strand, 54325174 - 54325093
Alignment:
Q  263 aagtgtttatgtataagctatttctataacaacatataa--taaagtcaaactgtttt-atataagttataagctgttttca 341  Q
    ||||| || ||||||| |||||||||| |||| | ||||  ||||||||||||||||| ||||||| |||||||| ||||||    
T  54325174 aagtgcttgtgtataaactatttctattacaaaagataaaataaagtcaaactgttttcatataagctataagctattttca 54325093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 311
Target Start/End: Complemental strand, 55437415 - 55437373
Alignment:
Q  269 ttatgtataagctatttctataacaacatataataaagtcaaa 311  Q
    |||| ||||||||||||||||||||| ||| ||||||||||||    
T  55437415 ttatctataagctatttctataacaatataaaataaagtcaaa 55437373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 344
Target Start/End: Original strand, 21157701 - 21157785
Alignment:
Q  263 aagtgtttatgtataagctatttctataacaacatataa--taaagtcaaactgtttt-atataagttataagctgttttcatat 344  Q
    ||||| |||||||| ||||||||  |||||||  |||||  ||||||||||||||||| || |||| |||||| |||||||||||    
T  21157701 aagtgcttatgtatcagctattttgataacaaagtataaactaaagtcaaactgttttcatgtaagctataagatgttttcatat 21157785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 332
Target Start/End: Complemental strand, 46013437 - 46013365
Alignment:
Q  263 aagtgtttatgtataagctatttctataacaacatataa--taaagtcaaactg-ttttatataagttataag 332  Q
    |||||||||||| ||| ||||||||  ||||| | ||||  ||||||||||||| ||||||||||||||||||    
T  46013437 aagtgtttatgtgtaaactatttctggaacaaaagataaaataaagtcaaactgtttttatataagttataag 46013365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 343
Target Start/End: Complemental strand, 18628641 - 18628597
Alignment:
Q  300 aataaagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    |||| |||||||||||||| ||||||||||||| |||||||||||    
T  18628641 aatatagtcaaactgtttttatataagttataaactgttttcata 18628597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 316
Target Start/End: Original strand, 21952508 - 21952563
Alignment:
Q  263 aagtgtttatgtataagctatttctataacaaca--tataataaagtcaaactgtt 316  Q
    ||||||||||| |||||||||||||||||||| |  || ||| |||||||||||||    
T  21952508 aagtgtttatgcataagctatttctataacaaaaggtaaaatcaagtcaaactgtt 21952563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 368
Target Start/End: Complemental strand, 30207707 - 30207602
Alignment:
Q  263 aagtgtttatgtataagctatttctataacaacatataata-aagtcaaactgtttt-atataagttataagctgttttcatataagctaccataaagag 360  Q
    ||||| ||||||||| | || ||||||||||| | |||| | || |||||||||||| ||||||| |||||| |||||||  |||||||||| || ||||    
T  30207707 aagtgcttatgtatatgttagttctataacaaaaaataaaataaatcaaactgttttcatataagctataagttgttttc--ataagctaccttagagag 30207610  T
Q  361 tttatgga 368  Q
     |||||||    
T  30207609 attatgga 30207602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 263 - 343
Target Start/End: Original strand, 38462214 - 38462297
Alignment:
Q  263 aagtgtttatgtataagctatttctata--acaacatataataaagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    |||||||||| |||||||||||||||||  | || ||| ||||||||||||||||||| ||||| | ||||| |||||||||||    
T  38462214 aagtgtttatttataagctatttctataccaaaagataaaataaagtcaaactgttttcatatatgctataaactgttttcata 38462297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 51278286 - 51278237
Alignment:
Q  271 atgtataagctatttctataacaacatat--aataaagtcaaactgtttt 318  Q
    |||||||||||||||||||||||| ||||  |||||||||||||||||||    
T  51278286 atgtataagctatttctataacaaaatattaaataaagtcaaactgtttt 51278237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 343
Target Start/End: Complemental strand, 24887409 - 24887337
Alignment:
Q  274 tataagctatttctataaca--acatataataaagtcaaactgt-tttatataagttataagctgttttcata 343  Q
    ||||||||||||||||||||  | ||| |||||||||||||||| || ||||||| || ||||||||||||||    
T  24887409 tataagctatttctataacaatagataaaataaagtcaaactgtattcatataagctaaaagctgttttcata 24887337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 343
Target Start/End: Original strand, 28306102 - 28306174
Alignment:
Q  274 tataagctatttctataacaaca--tataataaagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    |||||||||| |||||||||| |  || ||||||||||||||||||| |||||||||| ||| ||||||||||    
T  28306102 tataagctatctctataacaaaaagtaaaataaagtcaaactgttttcatataagttacaagttgttttcata 28306174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 339
Target Start/End: Complemental strand, 20192743 - 20192664
Alignment:
Q  263 aagtgtttatgtataagctatttctataac--aacatataataaagtcaaactgtttt-atataagttataagctgtttt 339  Q
    ||||| ||||||||||||||||| ||||||  || ||| ||||||||||||| ||||| ||||||  |||||||||||||    
T  20192743 aagtgcttatgtataagctatttatataacaaaagataaaataaagtcaaacagttttcatataatctataagctgtttt 20192664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 343
Target Start/End: Original strand, 22232767 - 22232842
Alignment:
Q  271 atgtataagctatttctataacaa--catataataaagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    ||||||||||||||| ||||||||   ||| ||||||||||||||||||| ||||||||  |||||| ||||||||    
T  22232767 atgtataagctatttatataacaaatgataaaataaagtcaaactgttttcatataagtcgtaagctattttcata 22232842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 318
Target Start/End: Complemental strand, 12985458 - 12985403
Alignment:
Q  263 aagtgtttatgtataagctatttctataacaacatataataaagtcaaactgtttt 318  Q
    ||||||||||||||||| | |||||||||||| ||| |||||||  ||||||||||    
T  12985458 aagtgtttatgtataagttgtttctataacaaaataaaataaagataaactgtttt 12985403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 316
Target Start/End: Original strand, 20669118 - 20669167
Alignment:
Q  269 ttatgtataagctatttctataacaacatat--aataaagtcaaactgtt 316  Q
    |||||||||||||||||||||||||| ||||  |||||||||||| ||||    
T  20669118 ttatgtataagctatttctataacaagatatacaataaagtcaaaatgtt 20669167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 343
Target Start/End: Original strand, 23815992 - 23816066
Alignment:
Q  269 ttatgtataagctatttctataacaacatataataaagtcaaactgttttatataagttataagctgttttcata 343  Q
    ||||||||||| ||||||||||| || | |||||||||| ||| ||| || ||| || || ||||||||||||||    
T  23815992 ttatgtataagttatttctataataaaagataataaagttaaattgtattctatgagctagaagctgttttcata 23816066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 342
Target Start/End: Original strand, 42039092 - 42039173
Alignment:
Q  263 aagtgtttatgtataagctatttctataac--aacatataataaagtcaaactgttttatataagttataagctgttttcat 342  Q
    ||||| ||||||||||||||||||| ||||  || ||| |||||||||| |  |||| |||| ||||||||| |||||||||    
T  42039092 aagtgcttatgtataagctatttctgtaacaaaaaataaaataaagtcagatggtttcatatgagttataagttgttttcat 42039173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 343
Target Start/End: Original strand, 1395611 - 1395687
Alignment:
Q  270 tatgtataagctatttctataac--aacatataataaagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    |||||||||||||||||||||||  || ||| |||||||||||| | |||| ||||||| ||| | |||||||||||    
T  1395611 tatgtataagctatttctataacaaaagataaaataaagtcaaattattttcatataagctatgaactgttttcata 1395687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 340
Target Start/End: Complemental strand, 3182499 - 3182419
Alignment:
Q  263 aagtgtttatgtataagctatttctat--aacaacatataataaagtcaaactgtttt-atataagttataagctgttttc 340  Q
    ||||||||||||||||| || ||||||  || || ||| |||||||||||| |||||| ||| |||||||| |||||||||    
T  3182499 aagtgtttatgtataagttacttctatagaaaaagataaaataaagtcaaattgttttcatacaagttataggctgttttc 3182419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 294
Target Start/End: Original strand, 44488819 - 44488848
Alignment:
Q  265 gtgtttatgtataagctatttctataacaa 294  Q
    ||||||||||||||||||||||||||||||    
T  44488819 gtgtttatgtataagctatttctataacaa 44488848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 342
Target Start/End: Original strand, 2201103 - 2201143
Alignment:
Q  303 aaagtcaaactgtttt-atataagttataagctgttttcat 342  Q
    |||||||||||||||| ||||||| ||||||||||||||||    
T  2201103 aaagtcaaactgttttcatataagctataagctgttttcat 2201143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 24605153 - 24605102
Alignment:
Q  263 aagtgtttatgtataagctatttctataacaacatat--aataaagtcaaac 312  Q
    ||||||||||||||||| |||||||||||||| | ||  |||||||||||||    
T  24605153 aagtgtttatgtataagttatttctataacaaaagatgaaataaagtcaaac 24605102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 343
Target Start/End: Complemental strand, 31337499 - 31337455
Alignment:
Q  300 aataaagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    ||||||||||||||||||| |||||||||||||| ||| ||||||    
T  31337499 aataaagtcaaactgtttttatataagttataagttgtattcata 31337455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 318
Target Start/End: Complemental strand, 40122883 - 40122832
Alignment:
Q  269 ttatgtataagctatttctataac--aacatataataaagtcaaactgtttt 318  Q
    |||||||||||||||||| |||||  || ||| |||||||||||||||||||    
T  40122883 ttatgtataagctatttcaataacaaaagataaaataaagtcaaactgtttt 40122832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 343
Target Start/End: Original strand, 41452495 - 41452539
Alignment:
Q  300 aataaagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    ||||||||||||||||||| |||| |||| |||||||||||||||    
T  41452495 aataaagtcaaactgttttcatattagttgtaagctgttttcata 41452539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 343
Target Start/End: Complemental strand, 42084388 - 42084305
Alignment:
Q  263 aagtgtttatgtataagctatttctataacaa--catataataaagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    |||||| |||||||||||||||||||||||||   ||| ||||| |||||  |||||| ||||||| ||| || ||||||||||    
T  42084388 aagtgtctatgtataagctatttctataacaaaggataaaataatgtcaacttgttttgatataagctattagttgttttcata 42084305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 343
Target Start/End: Original strand, 27509 - 27592
Alignment:
Q  263 aagtgtttatgtataagctatttctataac--aacatataataaagtcaaactgtttt-atataagttataagctgttttcata 343  Q
    ||||| ||||||||||| ||||||||||||  || ||| |||||||||||| |||||| ||||||  |||||| ||||||||||    
T  27509 aagtgcttatgtataagttatttctataacagaagataaaataaagtcaaattgttttcatataaactataagttgttttcata 27592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 1211 - 1159
Alignment:
Q  263 aagtgtttatgtataagctatttctataac--aacatataataaagtcaaact 313  Q
    ||||| ||||||||||||||||||||||||  || ||| ||||||||||||||    
T  1211 aagtgcttatgtataagctatttctataacaaaagataaaataaagtcaaact 1159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 2764 - 2816
Alignment:
Q  263 aagtgtttatgtataagctatttctataac--aacatataataaagtcaaact 313  Q
    ||||| ||||||||||||||||||||||||  || ||| ||||||||||||||    
T  2764 aagtgcttatgtataagctatttctataacaaaagataaaataaagtcaaact 2816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 375
Target Start/End: Original strand, 42550 - 42662
Alignment:
Q  263 aagtgtttatgtataagctatttctataac--aacatataataaagtcaaactgttttatataagttataagctgttttcatataagctaccataaagag 360  Q
    ||||| |||||||||||  |||||||||||  || ||| |||| ||| || |||||| ||||||| ||| || |||||||  ||||||||  || || ||    
T  42550 aagtgcttatgtataagtcatttctataacaaaagataaaatagagtaaacctgtttcatataagctattagttgttttc--ataagctattatgaaaag 42647  T
Q  361 tttatggatatataa 375  Q
    |||||||||||||||    
T  42648 tttatggatatataa 42662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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