View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20593_low_13 (Length: 407)
Name: NF20593_low_13
Description: NF20593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20593_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 15 - 346
Target Start/End: Original strand, 1110509 - 1110839
Alignment:
| Q |
15 |
agtttctacatgtctatcttcctattctacatgtctaatttctttattagatttttgtgtctgtttaggaagaccaattagctatcttataaatttgtat |
114 |
Q |
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| T |
1110509 |
agtttctacatgtctatcttcctattatacatgtctactttctttattagatttttgtgtctgtttaggaagaccaataagctatcttataaatttgtat |
1110608 |
T |
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| Q |
115 |
tattgaaaaagacttatttggtaattatcttttcatcacaagcttatagtttattctactaacttataacttaactttttacatgttatttcaaacaacg |
214 |
Q |
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| T |
1110609 |
tattgaaaaagacttatttgataattatcttttcatcacaagctcatagtttattctactaacttataactt-attttttacatgttatttcaaacaaca |
1110707 |
T |
|
| Q |
215 |
tttgatcatatatctatcatctttctttcatgtttgtaggggtgaaagtacaaatataatggtataatatacnnnnnnncttaatgttgtttttgttccg |
314 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
1110708 |
tttgaccatatatctatcatctttctttcatgtttgtaggggtgaaagtacaaatataatggtataatatatactgtttttcaatgttgtttttgttccg |
1110807 |
T |
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| Q |
315 |
gtccatatataattacactctttttaatataa |
346 |
Q |
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|||||||||||||||||||||||||| ||||| |
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| T |
1110808 |
gtccatatataattacactctttttattataa |
1110839 |
T |
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