View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20593_low_14 (Length: 379)
Name: NF20593_low_14
Description: NF20593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20593_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 36579573 - 36579948
Alignment:
| Q |
1 |
caaaggtattttcaatatttgatatagatagatgaggcagatgaggttgaatttttcatttgtcgaaattaatatgtaaactccatcttagatggattaa |
100 |
Q |
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| T |
36579573 |
caaaggtattttcaatatt-gatatagatagatgaggcagatgaggttgaatttttcatttgtcgaaattaatatgtaaactccatcttagatggattta |
36579671 |
T |
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| Q |
101 |
ctgcattggctacaagaattatcaactcaagtgaatccaaatcggttatcaaccaacctatcagt--------------acttgattaaaaaatgtatac |
186 |
Q |
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| T |
36579672 |
ctgcattggctacaagaattatcaactcaagtgaatccaaatcggttatcaaccaacctatcagtgacaatattccaatacttgattaaaaaatgtatac |
36579771 |
T |
|
| Q |
187 |
tcggaagcaccaccaataatgatgaattcacattttagtgtcctaaaactgtacagcnnnnnnncaacaactatatttacacattcaataattgagctat |
286 |
Q |
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| T |
36579772 |
tcggaagcaccaccaataatgatgaattcacattttaatgtcctaaaactgtacagcaaaaaaacaacaactatatttacaaattcaataattgagctat |
36579871 |
T |
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| Q |
287 |
tcttaacacatgaattcagtacttaacttttagaagtacatacatactatgatactacctcaagaaaaatagtacat |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36579872 |
tcttaacacatgaattcagtacttaacttttagaagtacatacatactatgatactacctcaagaaaaatagtacat |
36579948 |
T |
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