View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20593_low_15 (Length: 374)
Name: NF20593_low_15
Description: NF20593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20593_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 51 - 356
Target Start/End: Original strand, 14525291 - 14525597
Alignment:
| Q |
51 |
gtattaaattattgaatttgggtgttttgggggcggtcgtgtacataatgattcaaaatagaggtaaatatatacttttttg-agggcaggggtaaatat |
149 |
Q |
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| T |
14525291 |
gtatcaaattattgaatttgggtgttttgggggcggtcgtgtacataatgattcaaaatagaggtaaatatatacttttttttagggcaggggtaaatat |
14525390 |
T |
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| Q |
150 |
attttaaaaataactcgttttgttgataccatattttaagtaaggagtttagtttacgacggttgtcatcaaaatcaaattctctgagtttggcaaataa |
249 |
Q |
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| T |
14525391 |
attttaagaataactcgttttgttgataccatattttaagtaaggagtttagtttacgacggttatcaccaaaatcaaattctttgagtttgacaaatga |
14525490 |
T |
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| Q |
250 |
cttgtaaacatgttgttaaattaatcatgttgaagattacctataatcgttacgagtggacatcggaaaatatttcatttcaaactatgaatgagtttga |
349 |
Q |
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|||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||| || |||||||||||||||||| |||||||||||||| |
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| T |
14525491 |
cttgtaaacatgttattaaattaatcatgttgaagatcacctataatcgatacgagtggacattgggaaatatttcatttcaaacgatgaatgagtttga |
14525590 |
T |
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| Q |
350 |
aggctct |
356 |
Q |
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| T |
14525591 |
aggctct |
14525597 |
T |
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