View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20593_low_16 (Length: 371)

Name: NF20593_low_16
Description: NF20593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20593_low_16
NF20593_low_16
[»] chr6 (37 HSPs)
chr6 (106-296)||(2142250-2142441)
chr6 (106-257)||(24484845-24484997)
chr6 (106-216)||(7098152-7098263)
chr6 (118-216)||(7545645-7545744)
chr6 (144-232)||(21159364-21159453)
chr6 (149-277)||(32254031-32254158)
chr6 (19-105)||(20880632-20880718)
chr6 (19-105)||(21684511-21684597)
chr6 (201-296)||(30460963-30461061)
chr6 (151-232)||(4804439-4804521)
chr6 (109-169)||(7098271-7098331)
chr6 (19-86)||(21684438-21684505)
chr6 (144-232)||(7162075-7162164)
chr6 (105-174)||(7507856-7507925)
chr6 (144-232)||(12412628-12412717)
chr6 (154-233)||(27826528-27826608)
chr6 (19-86)||(20880724-20880791)
chr6 (151-232)||(17944153-17944235)
chr6 (144-221)||(13089744-13089821)
chr6 (106-174)||(7506791-7506859)
chr6 (115-213)||(7507758-7507850)
chr6 (144-293)||(13888517-13888668)
chr6 (167-232)||(1249164-1249230)
chr6 (106-159)||(32737705-32737758)
chr6 (297-337)||(20880600-20880640)
chr6 (297-337)||(21684589-21684629)
chr6 (147-257)||(11180426-11180537)
chr6 (144-225)||(227558-227640)
chr6 (147-232)||(7215850-7215936)
chr6 (106-174)||(24484806-24484873)
chr6 (229-268)||(17398785-17398824)
chr6 (198-267)||(2739433-2739503)
chr6 (147-225)||(2800609-2800687)
chr6 (120-177)||(7545582-7545642)
chr6 (167-232)||(29698154-29698220)
chr6 (192-224)||(2720373-2720405)
chr6 (228-284)||(27826467-27826523)
[»] chr4 (66 HSPs)
chr4 (105-297)||(1015810-1016004)
chr4 (106-268)||(56269033-56269197)
chr4 (106-266)||(5524404-5524565)
chr4 (106-257)||(42010083-42010235)
chr4 (106-296)||(47834508-47834682)
chr4 (105-268)||(37002207-37002371)
chr4 (145-295)||(56453816-56453967)
chr4 (106-225)||(36688145-36688264)
chr4 (120-254)||(28701805-28701940)
chr4 (148-297)||(4404216-4404368)
chr4 (105-216)||(32146510-32146622)
chr4 (106-216)||(46238974-46239085)
chr4 (106-190)||(5361460-5361544)
chr4 (105-216)||(53526096-53526208)
chr4 (114-216)||(25219003-25219107)
chr4 (106-216)||(17493010-17493121)
chr4 (199-294)||(56563895-56563992)
chr4 (144-232)||(56558270-56558359)
chr4 (240-295)||(618828-618883)
chr4 (106-216)||(28405332-28405443)
chr4 (198-296)||(53325250-53325349)
chr4 (126-216)||(55160347-55160438)
chr4 (144-232)||(19901913-19902002)
chr4 (106-216)||(17317215-17317325)
chr4 (106-169)||(46238903-46238966)
chr4 (106-169)||(53526025-53526088)
chr4 (197-257)||(5361409-5361470)
chr4 (108-169)||(28405263-28405324)
chr4 (161-248)||(48084537-48084625)
chr4 (105-169)||(55160446-55160510)
chr4 (106-169)||(17492939-17493002)
chr4 (151-232)||(5763164-5763246)
chr4 (144-232)||(23610633-23610722)
chr4 (144-232)||(34778412-34778501)
chr4 (146-232)||(3952167-3952254)
chr4 (144-232)||(5416461-5416549)
chr4 (144-232)||(30567892-30567981)
chr4 (161-245)||(47922526-47922611)
chr4 (107-159)||(25218935-25218987)
chr4 (109-169)||(32146442-32146502)
chr4 (145-254)||(5261085-5261195)
chr4 (151-221)||(24073619-24073689)
chr4 (144-225)||(47922361-47922443)
chr4 (144-221)||(18207035-18207112)
chr4 (144-232)||(33262547-33262636)
chr4 (144-232)||(39862508-39862597)
chr4 (144-268)||(33247125-33247258)
chr4 (106-169)||(17317145-17317207)
chr4 (198-271)||(46804582-46804657)
chr4 (221-302)||(3003449-3003530)
chr4 (106-174)||(5524374-5524441)
chr4 (181-232)||(12241440-12241492)
chr4 (144-230)||(12312470-12312558)
chr4 (145-224)||(1871277-1871356)
chr4 (106-145)||(5361370-5361409)
chr4 (229-284)||(12312594-12312649)
chr4 (154-232)||(38079725-38079804)
chr4 (234-284)||(25442271-25442321)
chr4 (179-225)||(31862250-31862296)
chr4 (198-255)||(52030743-52030801)
chr4 (240-297)||(23119486-23119543)
chr4 (197-232)||(12153162-12153198)
chr4 (229-269)||(33841895-33841935)
chr4 (106-174)||(37002332-37002399)
chr4 (221-253)||(54997878-54997910)
chr4 (106-174)||(56269158-56269225)
[»] chr5 (39 HSPs)
chr5 (127-291)||(41660038-41660203)
chr5 (106-257)||(36290568-36290720)
chr5 (106-257)||(3041264-3041416)
chr5 (105-255)||(2984346-2984497)
chr5 (101-257)||(11960541-11960699)
chr5 (114-216)||(40162737-40162840)
chr5 (144-232)||(4895730-4895819)
chr5 (144-232)||(35660604-35660693)
chr5 (148-295)||(17247332-17247482)
chr5 (144-232)||(40753157-40753246)
chr5 (19-102)||(22544521-22544604)
chr5 (151-232)||(14349794-14349876)
chr5 (151-232)||(32129619-32129701)
chr5 (144-232)||(11775784-11775873)
chr5 (144-221)||(18625416-18625493)
chr5 (144-221)||(37266734-37266811)
chr5 (106-169)||(40162666-40162729)
chr5 (111-157)||(8675088-8675134)
chr5 (143-254)||(28043509-28043621)
chr5 (145-232)||(34827183-34827271)
chr5 (161-255)||(43222094-43222189)
chr5 (144-268)||(13032064-13032198)
chr5 (183-284)||(10173877-10173985)
chr5 (145-270)||(10362010-10362135)
chr5 (105-174)||(36290528-36290596)
chr5 (166-232)||(4592791-4592858)
chr5 (145-254)||(27428877-27428985)
chr5 (145-220)||(29340999-29341074)
chr5 (106-156)||(2883775-2883825)
chr5 (139-216)||(8674987-8675069)
chr5 (228-268)||(128162-128202)
chr5 (297-337)||(22544486-22544526)
chr5 (205-248)||(27721124-27721168)
chr5 (117-153)||(31110306-31110342)
chr5 (148-224)||(31279914-31279990)
chr5 (151-232)||(39902406-39902488)
chr5 (243-284)||(4423059-4423100)
chr5 (145-226)||(31156545-31156625)
chr5 (106-174)||(3041388-3041455)
[»] chr8 (33 HSPs)
chr8 (105-255)||(26749504-26749655)
chr8 (106-268)||(1937111-1937275)
chr8 (114-266)||(34612520-34612674)
chr8 (19-105)||(43972883-43972969)
chr8 (206-297)||(24241501-24241593)
chr8 (111-216)||(17867621-17867727)
chr8 (106-216)||(30904969-30905080)
chr8 (106-190)||(24241698-24241782)
chr8 (144-232)||(30426664-30426753)
chr8 (118-225)||(11090501-11090612)
chr8 (145-257)||(3763518-3763631)
chr8 (144-221)||(28069722-28069799)
chr8 (145-244)||(30796257-30796356)
chr8 (106-169)||(17867735-17867798)
chr8 (210-270)||(20168051-20168113)
chr8 (144-225)||(45113269-45113351)
chr8 (297-337)||(43972851-43972891)
chr8 (200-246)||(24241658-24241705)
chr8 (144-221)||(36991359-36991436)
chr8 (161-255)||(6399892-6399987)
chr8 (110-169)||(30904902-30904961)
chr8 (144-221)||(10672509-10672584)
chr8 (148-257)||(28403151-28403261)
chr8 (151-232)||(40695249-40695331)
chr8 (144-232)||(41511253-41511342)
chr8 (201-266)||(21492730-21492797)
chr8 (144-232)||(10652612-10652702)
chr8 (115-174)||(26749629-26749687)
chr8 (111-177)||(11090445-11090511)
chr8 (109-174)||(34612493-34612557)
chr8 (206-266)||(13035103-13035163)
chr8 (181-232)||(28318934-28318986)
chr8 (170-233)||(44859188-44859252)
[»] chr3 (32 HSPs)
chr3 (106-268)||(42613035-42613198)
chr3 (109-268)||(49679230-49679390)
chr3 (111-268)||(31523630-31523788)
chr3 (106-268)||(27959062-27959208)
chr3 (199-268)||(3009194-3009264)
chr3 (144-288)||(43719942-43720097)
chr3 (113-225)||(45799076-45799193)
chr3 (104-216)||(53642067-53642178)
chr3 (144-221)||(19830426-19830503)
chr3 (144-232)||(27033642-27033731)
chr3 (145-299)||(28229398-28229548)
chr3 (144-232)||(34373822-34373911)
chr3 (144-294)||(48084738-48084900)
chr3 (144-232)||(2229974-2230063)
chr3 (106-159)||(28792331-28792384)
chr3 (161-232)||(34373597-34373669)
chr3 (151-232)||(46167384-46167466)
chr3 (144-284)||(550811-550962)
chr3 (19-91)||(7568998-7569075)
chr3 (106-150)||(28219540-28219584)
chr3 (228-284)||(29586266-29586322)
chr3 (144-217)||(40851781-40851854)
chr3 (198-296)||(49341230-49341330)
chr3 (147-225)||(40810353-40810432)
chr3 (145-254)||(51982581-51982692)
chr3 (178-268)||(32577477-32577567)
chr3 (106-167)||(28792436-28792497)
chr3 (109-145)||(20494572-20494608)
chr3 (106-174)||(31523749-31523816)
chr3 (260-296)||(35957568-35957604)
chr3 (106-174)||(42613007-42613074)
chr3 (106-174)||(49679351-49679418)
[»] chr7 (51 HSPs)
chr7 (105-254)||(47799856-47800006)
chr7 (112-268)||(30588490-30588647)
chr7 (107-268)||(19888992-19889154)
chr7 (106-257)||(28528516-28528669)
chr7 (106-294)||(47080350-47080547)
chr7 (120-209)||(35737128-35737217)
chr7 (201-296)||(35736865-35736961)
chr7 (106-216)||(14696714-14696825)
chr7 (104-216)||(30102501-30102614)
chr7 (106-196)||(32520286-32520377)
chr7 (106-216)||(4269187-4269295)
chr7 (105-216)||(19027635-19027751)
chr7 (105-216)||(20726885-20727001)
chr7 (145-297)||(8149536-8149688)
chr7 (111-215)||(31236175-31236280)
chr7 (105-169)||(32520385-32520449)
chr7 (106-169)||(4269116-4269179)
chr7 (105-169)||(30102429-30102493)
chr7 (148-294)||(47500281-47500439)
chr7 (151-221)||(25084730-25084800)
chr7 (144-225)||(33450505-33450587)
chr7 (144-232)||(47226071-47226158)
chr7 (144-221)||(9559049-9559126)
chr7 (112-169)||(14696833-14696890)
chr7 (147-296)||(48831190-48831341)
chr7 (106-165)||(19027763-19027822)
chr7 (106-165)||(20726814-20726873)
chr7 (210-270)||(44389760-44389822)
chr7 (144-286)||(7362495-7362648)
chr7 (144-232)||(12139317-12139407)
chr7 (144-221)||(4888470-4888547)
chr7 (144-232)||(21151143-21151232)
chr7 (145-281)||(32915891-32916035)
chr7 (165-289)||(32916103-32916228)
chr7 (144-224)||(989129-989209)
chr7 (144-232)||(16366509-16366598)
chr7 (144-221)||(18198259-18198336)
chr7 (198-254)||(41220272-41220329)
chr7 (144-232)||(45260422-45260511)
chr7 (210-268)||(6882129-6882188)
chr7 (144-225)||(34985940-34986022)
chr7 (197-270)||(48205682-48205755)
chr7 (114-174)||(33057207-33057268)
chr7 (148-232)||(39855812-39855897)
chr7 (144-221)||(44647965-44648044)
chr7 (149-224)||(46802331-46802406)
chr7 (198-244)||(11828958-11829004)
chr7 (144-232)||(29631039-29631126)
chr7 (110-142)||(8256408-8256440)
chr7 (236-268)||(41271817-41271849)
chr7 (106-174)||(47799981-47800048)
[»] chr2 (39 HSPs)
chr2 (105-294)||(374922-375112)
chr2 (106-268)||(23459803-23459966)
chr2 (113-268)||(8988811-8988966)
chr2 (106-268)||(29188608-29188772)
chr2 (106-268)||(3354737-3354883)
chr2 (106-216)||(13780506-13780617)
chr2 (111-216)||(40254111-40254217)
chr2 (143-266)||(36758855-36758979)
chr2 (105-216)||(41435159-41435271)
chr2 (106-216)||(3594865-3594976)
chr2 (106-169)||(3594794-3594857)
chr2 (106-193)||(23464303-23464389)
chr2 (145-262)||(35315463-35315581)
chr2 (97-169)||(41435279-41435351)
chr2 (106-216)||(6288050-6288163)
chr2 (144-232)||(35316816-35316905)
chr2 (109-169)||(40254225-40254285)
chr2 (106-170)||(42380248-42380312)
chr2 (213-296)||(2805285-2805368)
chr2 (155-232)||(28564883-28564961)
chr2 (144-221)||(13238684-13238761)
chr2 (144-232)||(23259482-23259571)
chr2 (106-169)||(6287979-6288042)
chr2 (106-169)||(13780435-13780498)
chr2 (169-245)||(30840859-30840935)
chr2 (114-174)||(8008735-8008795)
chr2 (161-268)||(373176-373284)
chr2 (161-268)||(41072961-41073069)
chr2 (145-254)||(36929684-36929795)
chr2 (147-225)||(30709109-30709187)
chr2 (201-290)||(39329896-39329986)
chr2 (144-218)||(2063359-2063434)
chr2 (114-177)||(43628692-43628754)
chr2 (106-136)||(36402389-36402419)
chr2 (213-257)||(23464392-23464437)
chr2 (212-268)||(30824123-30824180)
chr2 (198-270)||(45446651-45446724)
chr2 (106-174)||(8988783-8988850)
chr2 (197-232)||(39465766-39465802)
[»] chr1 (34 HSPs)
chr1 (106-258)||(52279996-52280149)
chr1 (106-257)||(30077601-30077753)
chr1 (100-216)||(6948781-6948899)
chr1 (106-216)||(18107278-18107389)
chr1 (111-174)||(36004878-36004941)
chr1 (143-268)||(46045642-46045768)
chr1 (144-232)||(50484377-50484466)
chr1 (109-169)||(18107397-18107457)
chr1 (151-232)||(12151758-12151840)
chr1 (144-221)||(50294058-50294135)
chr1 (109-169)||(6948907-6948967)
chr1 (144-294)||(18976299-18976458)
chr1 (161-270)||(24413294-24413404)
chr1 (147-225)||(39426209-39426287)
chr1 (172-248)||(26768870-26768947)
chr1 (147-257)||(33441498-33441610)
chr1 (106-174)||(13615298-13615366)
chr1 (111-174)||(20507601-20507664)
chr1 (205-259)||(40805874-40805929)
chr1 (163-232)||(12380924-12380994)
chr1 (163-232)||(12384991-12385061)
chr1 (148-233)||(26860049-26860135)
chr1 (144-232)||(40328269-40328355)
chr1 (144-221)||(48327149-48327225)
chr1 (229-297)||(5047471-5047539)
chr1 (147-221)||(24977243-24977317)
chr1 (230-268)||(42720849-42720887)
chr1 (197-263)||(680067-680135)
chr1 (145-186)||(40808493-40808534)
chr1 (198-226)||(3885729-3885757)
chr1 (192-224)||(5047424-5047456)
chr1 (192-224)||(23916086-23916118)
chr1 (145-193)||(27982083-27982131)
chr1 (181-225)||(46608409-46608453)
[»] scaffold0171 (2 HSPs)
scaffold0171 (106-257)||(17261-17415)
scaffold0171 (106-174)||(17387-17454)
[»] scaffold0664 (2 HSPs)
scaffold0664 (106-216)||(4657-4768)
scaffold0664 (109-169)||(4776-4836)
[»] scaffold0712 (1 HSPs)
scaffold0712 (106-268)||(3030-3174)
[»] scaffold0709 (1 HSPs)
scaffold0709 (106-268)||(3050-3194)
[»] scaffold0035 (1 HSPs)
scaffold0035 (144-221)||(16392-16469)
[»] scaffold0012 (1 HSPs)
scaffold0012 (144-232)||(208054-208143)
[»] scaffold0238 (1 HSPs)
scaffold0238 (106-167)||(25689-25750)
[»] scaffold0250 (1 HSPs)
scaffold0250 (144-221)||(7150-7227)
[»] scaffold0008 (1 HSPs)
scaffold0008 (144-221)||(9196-9273)
[»] scaffold0126 (1 HSPs)
scaffold0126 (229-288)||(22533-22592)
[»] scaffold0121 (1 HSPs)
scaffold0121 (146-284)||(29566-29706)
[»] scaffold0456 (1 HSPs)
scaffold0456 (197-270)||(13639-13723)
[»] scaffold0009 (1 HSPs)
scaffold0009 (144-232)||(6430-6519)


Alignment Details
Target: chr6 (Bit Score: 164; Significance: 1e-87; HSPs: 37)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 106 - 296
Target Start/End: Original strand, 2142250 - 2142441
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcc 205  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |    
T  2142250 gggttaagatcctctccatttataaatttttccatttgttgcaatttggagagagatagacacaaaaaataagtggtgggtcccatcattaggtgggttc 2142349  T
Q  206 caccatcattaatta-tttttactttttatgtgtctttatctctctaaatggaggaaatggagagggaaataaatggagaagattttgactc 296  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2142350 caccatcattaattattttttactttttatgtgtctttatctctctaaatggaggaaatggagagggaaataaatggagaagattttgactc 2142441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 106 - 257
Target Start/End: Complemental strand, 24484997 - 24484845
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcc 205  Q
    ||||||||||||||| ||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||    
T  24484997 gggtcaagatcctcttcatttataaatttttccgtttgttgcaatttggagagagatagacacaaaaaataagtggtgggtcctatcactaagtgggtcc 24484898  T
Q  206 caccatcattaattat-ttttactttttatgtgtctttatctctctaaatgga 257  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24484897 caccatcattaattattttttactttttatgtgtctttatctctctaaatgga 24484845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 106 - 216
Target Start/End: Original strand, 7098152 - 7098263
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagac-acaaaaaataagtggtgggtcccatcactaggtgggtc 204  Q
    |||| |||||||||||||||||||| ||||| |||||||||||||||||||||| |||||| | |||||||||||||||||||| ||||||| |||| ||    
T  7098152 gggtaaagatcctctccatttataactttttccatttgttgcaatttggagagagatagacaaaaaaaaataagtggtgggtcctatcactaagtggatc 7098251  T
Q  205 ccaccatcatta 216  Q
    ||||||||||||    
T  7098252 ccaccatcatta 7098263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 118 - 216
Target Start/End: Complemental strand, 7545744 - 7545645
Alignment:
Q  118 tctccatttataaattttttcatttgttgcaatttggagagaaatagaca-caaaaaataagtggtgggtcccatcactaggtgggtcccaccatcatta 216  Q
    ||||||||||||| |||||  ||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||| |||| |||||| |||||||    
T  7545744 tctccatttataactttttctatttgttgcaatttggagagagatagacaccaaaaaataagtggtgggtcctatcactaagtggatcccactatcatta 7545645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 21159364 - 21159453
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    |||||| ||||||||||||||||||||||||||  |||||||||| | ||||| |||||||||||||||||||||||| |||||||||||    
T  21159364 ttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatattttacttttt 21159453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 149 - 277
Target Start/End: Original strand, 32254031 - 32254158
Alignment:
Q  149 atttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattatttttactttttatgtgtctttatctct 248  Q
    |||||||| || ||||||| |||||| | ||||||||||| |||| || ||| ||||||| ||||||||||||||||  ||||| | ||| |||||||||    
T  32254031 atttggagggagatagacaaaaaaaaaaggtggtgggtcctatcattaagtgagtcccactatcattaattattttttattttt-tatgtttttatctct 32254129  T
Q  249 ctaaatggaggaaatggagagggaaataa 277  Q
    |||||| |||||||||||| |||||||||    
T  32254130 ctaaattgaggaaatggagtgggaaataa 32254158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 20880718 - 20880632
Alignment:
Q  19 taaccgctctttttgcgcatgtctttattgttgttgcatgctaataattagaaggaaacaaattggtccccctagtttatttaactt 105  Q
    |||||||||||||||| ||||||||  |||||| |||||||||||||||||||||||| |||||||||  |||| ||||||||||||    
T  20880718 taaccgctctttttgctcatgtcttctttgttgctgcatgctaataattagaaggaaataaattggtcgtcctattttatttaactt 20880632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 21684511 - 21684597
Alignment:
Q  19 taaccgctctttttgcgcatgtctttattgttgttgcatgctaataattagaaggaaacaaattggtccccctagtttatttaactt 105  Q
    |||||||||||||||| ||||||||  |||||| |||||||||||||||||||||||| |||||||||  |||| ||||||||||||    
T  21684511 taaccgctctttttgctcatgtcttctttgttgctgcatgctaataattagaaggaaataaattggtcgtcctattttatttaactt 21684597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 201 - 296
Target Start/End: Original strand, 30460963 - 30461061
Alignment:
Q  201 ggtcccaccatcattaattatttttacttt---ttatgtgtctttatctctctaaatggaggaaatggagagggaaataaatggagaagattttgactc 296  Q
    ||||| |||||||||||| ||||||| |||   || |||||||||||| |||||||||||||||||||||| ||||||||||||||| ||| |||||||    
T  30460963 ggtcctaccatcattaatgatttttattttgttttttgtgtctttatcactctaaatggaggaaatggagaaggaaataaatggagatgatcttgactc 30461061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 151 - 232
Target Start/End: Complemental strand, 4804521 - 4804439
Alignment:
Q  151 ttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    ||||||||| ||||||||||||||||  |||||||||| | ||||| |||||||||||||||||||||||| |||||||||||    
T  4804521 ttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatattttacttttt 4804439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 7098331 - 7098271
Alignment:
Q  109 tcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacaca 169  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||    
T  7098331 tcaagatcctctctatttataatttttttcatttgttgcaatttggagagagatagacaca 7098271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 21684438 - 21684505
Alignment:
Q  19 taaccgctctttttgcgcatgtctttattgttgttgcatgctaataattagaaggaaacaaattggtc 86  Q
    |||||||||||||||| ||||||||  |||||| |||||||||||||||||||||||| |||||||||    
T  21684438 taaccgctctttttgctcatgtcttctttgttgctgcatgctaataattagaaggaaataaattggtc 21684505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 7162164 - 7162075
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    |||||| ||||||||| |||||||||| |||||  |||||||||| |  |||| |||||||||||||||||||||||| |||||||||||    
T  7162164 ttgcaagttggagagagatagacacaagaaatagatggtgggtcctactactaagtgggtcccaccatcattaattatattttacttttt 7162075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 7507925 - 7507856
Alignment:
Q  105 tgggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaa 174  Q
    ||||| |||||||||||||||||||| ||||| |||||||||||||||| ||||| ||||||||| ||||    
T  7507925 tgggttaagatcctctccatttataactttttccatttgttgcaatttgaagagagatagacacacaaaa 7507856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 12412717 - 12412628
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    |||||| ||||||||| |||||||||| |||||  |||||||||| | ||||| |||||| ||||||||||||||||| |||||||||||    
T  12412717 ttgcaagttggagagagatagacacaagaaatagatggtgggtcctaccactaagtgggttccaccatcattaattatattttacttttt 12412628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 233
Target Start/End: Complemental strand, 27826608 - 27826528
Alignment:
Q  154 gagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttta 233  Q
    |||||| ||||||||||||||||  |||||||||| | ||||| |||||||||||||||||||||||| ||||| ||||||    
T  27826608 gagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatattttatttttta 27826528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 20880791 - 20880724
Alignment:
Q  19 taaccgctctttttgcgcatgtctttattgttgttgcatgctaataattagaaggaaacaaattggtc 86  Q
    |||||||||||||||| ||||||||  |||||  |||||||||||||||||||||||| |||||||||    
T  20880791 taaccgctctttttgctcatgtcttctttgttactgcatgctaataattagaaggaaataaattggtc 20880724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 232
Target Start/End: Complemental strand, 17944235 - 17944153
Alignment:
Q  151 ttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    ||||||||| ||||||||||||||||  |||| ||||| | |||||  ||||||||||||||||||||||| |||||||||||    
T  17944235 ttggagagagatagacacaaaaaatagatggtaggtcctaccactaaatgggtcccaccatcattaattatattttacttttt 17944153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 13089744 - 13089821
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat 221  Q
    |||||| ||||||||| |||||||||||| |||  |||||||||| | ||||| ||||| ||||||||||||||||||    
T  13089744 ttgcaagttggagagagatagacacaaaatatagatggtgggtcctaccactaagtgggccccaccatcattaattat 13089821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 7506791 - 7506859
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaa 174  Q
    |||| ||||||||||| |||||||| ||||| ||||| |||||||||||||||| ||||||||| ||||    
T  7506791 gggttaagatcctctctatttataactttttccatttattgcaatttggagagagatagacacacaaaa 7506859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 213
Target Start/End: Original strand, 7507758 - 7507850
Alignment:
Q  115 tcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatca 213  Q
    |||||||||||||||| ||||| ||||||||||||||| |||||| ||||||||| ||      |||||||||| || |||| |||| |||||||||||    
T  7507758 tcctctccatttataactttttccatttgttgcaatttagagagagatagacacacaa------tggtgggtcctatgactaagtggatcccaccatca 7507850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 293
Target Start/End: Original strand, 13888517 - 13888668
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaa-aataagtggtgggtcccatcactaggtgggtcccaccatcattaattattttt-actttttatgtgtctt 241  Q
    |||||||||||||||| ||| |||||||| ||||  |||||| ||| | || ||  ||||||||| ||||||||||||||||| |||  | |  |||||     
T  13888517 ttgcaatttggagagagatatacacaaaataatagatggtggttcctaccattaactgggtcccatcatcattaattattttttactaataagctgtcta 13888616  T
Q  242 tatctctctaaatggaggaaatggagagggaaataaatggagaagattttga 293  Q
    |||||||| ||||||  |||||| ||| ||| ||||||||||| ||||||||    
T  13888617 tatctctccaaatggtagaaatgaagaaggacataaatggagaggattttga 13888668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 167 - 232
Target Start/End: Original strand, 1249164 - 1249230
Alignment:
Q  167 acaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    ||||||||||  |||||||||| | ||||| |||||||||||||||||||||||| |||||||||||    
T  1249164 acaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatattttacttttt 1249230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 32737705 - 32737758
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagaga 159  Q
    |||| ||||||||||| |||||||| ||||| ||||||||||||||||||||||    
T  32737705 gggtaaagatcctctcgatttataactttttccatttgttgcaatttggagaga 32737758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 297 - 337
Target Start/End: Complemental strand, 20880640 - 20880600
Alignment:
Q  297 atttaacttagggtcaccactcatggaacttcaatttctac 337  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  20880640 atttaacttagggtcaccactcatggaacttcgatttctac 20880600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 297 - 337
Target Start/End: Original strand, 21684589 - 21684629
Alignment:
Q  297 atttaacttagggtcaccactcatggaacttcaatttctac 337  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  21684589 atttaacttagggtcaccactcatggaacttcgatttctac 21684629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 257
Target Start/End: Original strand, 11180426 - 11180537
Alignment:
Q  147 caatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattatttt-tactttttatgtgtctttatc 245  Q
    ||||||| | ||| ||| ||||||||||||  || || ||| ||  |||| |||| | |||||||||||||||||||| |||||||| ||| | ||||||    
T  11180426 caatttgaaaagagataaacacaaaaaatagttgttgagtctcaatactaagtggattccaccatcattaattattttttactttttgtgtatttttatc 11180525  T
Q  246 tctctaaatgga 257  Q
    ||||||||||||    
T  11180526 tctctaaatgga 11180537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 225
Target Start/End: Original strand, 227558 - 227640
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaa-aataagtggtgggtcccatcactaggtgggtcccaccatcattaattattttt 225  Q
    ||||| |||||||||| |||||||||||| ||||  |||||||||| | ||||| |||| ||||| ||||||| |||||||||    
T  227558 ttgcattttggagagagatagacacaaaagaatagatggtgggtcctaccactaagtggatcccatcatcattgattattttt 227640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 232
Target Start/End: Original strand, 7215850 - 7215936
Alignment:
Q  147 caatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaatta-tttttacttttt 232  Q
    ||||||||||||| ||||||||| ||||||  | |||||||| | |||||  |||||||||| |||||||||||  |||||||||||    
T  7215850 caatttggagagagatagacacataaaatagatagtgggtcctaccactaattgggtcccactatcattaattacgttttacttttt 7215936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 24484806 - 24484873
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaa 174  Q
    ||||||| ||||| |||||||||||||||||||||||||| | |||| |||||| | ||||||| ||||    
T  24484806 gggtcaatatcctatccatttataaattttttcatttgtt-ccatttagagagataaagacacataaaa 24484873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 17398785 - 17398824
Alignment:
Q  229 ttttatgtgtctttatctctctaaatggaggaaatggaga 268  Q
    ||||||||||||||||||||| |||||||||||| |||||    
T  17398785 ttttatgtgtctttatctctccaaatggaggaaagggaga 17398824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 267
Target Start/End: Complemental strand, 2739503 - 2739433
Alignment:
Q  198 gtgggtcccaccatcattaattatttttacttttta-tgtgtctttatctctctaaatggaggaaatggag 267  Q
    |||||||||||||||||||||||||||||  || || ||| | ||||||| | ||||| ||||||||||||    
T  2739503 gtgggtcccaccatcattaattatttttaaattatattgtatttttatctttttaaattgaggaaatggag 2739433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 225
Target Start/End: Original strand, 2800609 - 2800687
Alignment:
Q  147 caatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattattttt 225  Q
    ||||||||||||| ||||||||| ||||||  | |||| ||  | || || |||||||||||||||||| |||||||||    
T  2800609 caatttggagagagatagacacataaaatagatagtggatcataccattaagtgggtcccaccatcattgattattttt 2800687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 7545582 - 7545642
Alignment:
Q  120 tccatttataaatttttt---catttgttgcaatttggagagaaatagacacaaaaaataa 177  Q
    ||||||||||| ||||||   |||||||||||||||||||||| ||||| | |||||||||    
T  7545582 tccatttataatttttttttccatttgttgcaatttggagagagatagataaaaaaaataa 7545642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 232
Target Start/End: Complemental strand, 29698220 - 29698154
Alignment:
Q  167 acaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    ||||||||||  |||||| ||| | || || |||||||||||||||||||||||| |||||||||||    
T  29698220 acaaaaaatagatggtggatcctaccattaagtgggtcccaccatcattaattatattttacttttt 29698154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 2720405 - 2720373
Alignment:
Q  192 cactaggtgggtcccaccatcattaattatttt 224  Q
    ||||| |||||||||||||||||||||||||||    
T  2720405 cactaagtgggtcccaccatcattaattatttt 2720373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 27826523 - 27826467
Alignment:
Q  228 tttttatgtgtctttatctctctaaatggaggaaatggagagggaaataaatggaga 284  Q
    |||||||||||||||||||||| ||||||| ||||| ||||   | |||||||||||    
T  27826523 tttttatgtgtctttatctctcaaaatggaagaaattgagaaacacataaatggaga 27826467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 66)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 105 - 297
Target Start/End: Original strand, 1015810 - 1016004
Alignment:
Q  105 tgggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtc 204  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  1015810 tgggttaagatcctctccatttataaattttttcatttgttgcaatttagagagagatagacacaaaaaataagtggtgggtcccatcattaggtgggtc 1015909  T
Q  205 ccaccatcattaatta--tttttactttttatgtgtctttatctctctaaatggaggaaatggagagggaaataaatggagaagattttgactca 297  Q
    ||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1015910 ccaccatcattaattatttttttacttttcatgtgtctttatctctctaaatggaggaaatggagagggaaataaatggagaagattttgactca 1016004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 106 - 268
Target Start/End: Original strand, 56269033 - 56269197
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||| ||||||||    
T  56269033 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagagatagacacaaaaaataagtggtgggtcctaccactaagtgggtcc 56269132  T
Q  206 caccatcattaatta--tttttactttttatgtgtctttatctctctaaatggaggaaatggaga 268  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||  |||||||||    
T  56269133 caccatcattaattatttttttactttttatgtgtctttatctctctaaatggaacaaatggaga 56269197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 106 - 266
Target Start/End: Complemental strand, 5524565 - 5524404
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcc 205  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||| |||| || ||||||||    
T  5524565 gggtcaagatcctctccatttataaatttttccatttgttgcaatttggagagagatagacataaaaaataagtggtgggtcctatcagtaagtgggtcc 5524466  T
Q  206 caccatcattaattat-ttttactttttatgtgtctttatctctctaaatggaggaaatgga 266  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||    
T  5524465 caccatcattaattattttttactttttatgtgtctttatctctctaaatggaacaaatgga 5524404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 106 - 257
Target Start/End: Complemental strand, 42010235 - 42010083
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||| |||||||  |||||||    
T  42010235 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagagatagatacaaaaaataagtggcgggtcctatcactaaatgggtcc 42010136  T
Q  206 caccatcattaattat-ttttactttttatgtgtctttatctctctaaatgga 257  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  42010135 caccatcattaattattttttactttttatgtgtctttatctctttaaatgga 42010083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 106 - 296
Target Start/End: Complemental strand, 47834682 - 47834508
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcc 205  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||                   
T  47834682 gggtcaagatcctctccatttataaatttttccatttgttgcaatttggagagagataggcacaaaaaataagtggtgggtccca--------------- 47834598  T
Q  206 caccatcattaattattttt-actttttatgtgtctttatctctctaaatggaggaaatggagagggaaataaatggagaagattttgactc 296  Q
      |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  47834597 --ccatcattaattattttttactttttatgtgtctttatctttctaaatggaggaaatggagagggaaataaatggagaagattttgactc 47834508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 105 - 268
Target Start/End: Original strand, 37002207 - 37002371
Alignment:
Q  105 tgggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtc 204  Q
    ||||| |||||||||||||||||||||||| | ||||| |||||||||||| ||| |||||||||||||||||||||||| ||| || |||| |||||||    
T  37002207 tgggttaagatcctctccatttataaatttctccatttattgcaatttggaaagagatagacacaaaaaataagtggtggatcctattactaagtgggtc 37002306  T
Q  205 ccaccatcattaatta-tttttactttttatgtgtctttatctctctaaatggaggaaatggaga 268  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||    
T  37002307 ccaccatcattaattattttttactttttatgtgtctttatctctctaaatggaacaaatggaga 37002371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 145 - 295
Target Start/End: Original strand, 56453816 - 56453967
Alignment:
Q  145 tgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaatta-tttttactttttatgtgtcttta 243  Q
    ||||||||||||||| |||||||||||||||| ||||||||||| |||| || |||||||||||||||||| |||| |||||||||||||||||||||||    
T  56453816 tgcaatttggagagagatagacacaaaaaataggtggtgggtcctatcattaagtgggtcccaccatcattcattattttttactttttatgtgtcttta 56453915  T
Q  244 tctctctaaatggaggaaatggagagggaaataaatggagaagattttgact 295  Q
    |||||||||||  || ||||||||||||||||||||||||| ||| ||||||    
T  56453916 tctctctaaatatagaaaatggagagggaaataaatggagaggatcttgact 56453967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 106 - 225
Target Start/End: Original strand, 36688145 - 36688264
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcc 205  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||| || |||| ||||||| ||||||||    
T  36688145 gggtcaagatcctctccatttataaatttctccatttgttgcaatttggagagagatagacacaaaaaataagtgttgagtcctatcactaagtgggtcc 36688244  T
Q  206 caccatcattaattattttt 225  Q
    ||||||||||||||||||||    
T  36688245 caccatcattaattattttt 36688264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 120 - 254
Target Start/End: Original strand, 28701805 - 28701940
Alignment:
Q  120 tccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaa-aataagtggtgggtcccatcactaggtgggtcccaccatcattaat 218  Q
    ||||||||||||||| | ||||||||| |||||||||||| ||||||| |||| |||||||||||||||  ||||||| ||||||| |||||||||||||    
T  28701805 tccatttataaatttatccatttgttggaatttggagagagatagacaaaaaaaaataagtggtgggtcaaatcactaagtgggtctcaccatcattaat 28701904  T
Q  219 tatttttactttttatgtgtctttatctctctaaat 254  Q
    |||||||| ||||||||||||||||||||| |||||    
T  28701905 tatttttattttttatgtgtctttatctctttaaat 28701940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 148 - 297
Target Start/End: Complemental strand, 4404368 - 4404216
Alignment:
Q  148 aatttggagagaaatagacacaaaaaataag--tggtgggtcccatcactaggtgggtcccaccatcattaatta-tttttactttttatgtgtctttat 244  Q
    |||||||||| | ||||||| |||||| |||  | |||||||| |||| || ||| ||| ||||||||||||||| ||||||||||||||||||||||||    
T  4404368 aatttggagaaagatagacaaaaaaaaaaaggttagtgggtcctatcattaagtgtgtctcaccatcattaattaatttttactttttatgtgtctttat 4404269  T
Q  245 ctctctaaatggaggaaatggagagggaaataaatggagaagattttgactca 297  Q
    || ||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  4404268 ctttctaaatggaggaaatggagagggaaataaatggagaggatcttgactca 4404216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 105 - 216
Target Start/End: Complemental strand, 32146622 - 32146510
Alignment:
Q  105 tgggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacac-aaaaaataagtggtgggtcccatcactaggtgggt 203  Q
    ||||| |||||||||||||||||||| ||||| |||||||||||||||||||||| ||||| || |||||||||||||||||||| ||||||| |||| |    
T  32146622 tgggtaaagatcctctccatttataactttttccatttgttgcaatttggagagagatagatacaaaaaaataagtggtgggtcctatcactaagtggat 32146523  T
Q  204 cccaccatcatta 216  Q
    |||||||||||||    
T  32146522 cccaccatcatta 32146510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 106 - 216
Target Start/End: Complemental strand, 46239085 - 46238974
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaa-aaaataagtggtgggtcccatcactaggtgggtc 204  Q
    |||| |||||||||||||||||||| ||||| |||||||||||||||| ||||| |||||||||| |||||||||||||||||| ||||||| |||| ||    
T  46239085 gggtaaagatcctctccatttataactttttccatttgttgcaatttgaagagagatagacacaaaaaaataagtggtgggtcctatcactaagtggatc 46238986  T
Q  205 ccaccatcatta 216  Q
    ||||||||||||    
T  46238985 ccaccatcatta 46238974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 106 - 190
Target Start/End: Complemental strand, 5361544 - 5361460
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaataagtggtgggtccca 190  Q
    ||||||| ||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5361544 gggtcaaaatcctcttcatttataaatttttccatttgttgcaatttggagagagatagacacaaaaaataagtggtgggtccca 5361460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 105 - 216
Target Start/End: Complemental strand, 53526208 - 53526096
Alignment:
Q  105 tgggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagac-acaaaaaataagtggtgggtcccatcactaggtgggt 203  Q
    ||||| |||||||||||||||||||| || || |||||||||||||||||||||| |||||| | |||||||||||||||||||| ||||||| |||| |    
T  53526208 tgggtaaagatcctctccatttataacttcttccatttgttgcaatttggagagagatagacaaaaaaaaataagtggtgggtcctatcactaagtggat 53526109  T
Q  204 cccaccatcatta 216  Q
    |||||||||||||    
T  53526108 cccaccatcatta 53526096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 114 - 216
Target Start/End: Complemental strand, 25219107 - 25219003
Alignment:
Q  114 atcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaa--aaaataagtggtgggtcccatcactaggtgggtcccaccat 211  Q
    ||||||||||||||||| ||||| ||||||||| |||||||||||| ||||||||||  |||||||||||||||||| ||||||| |||| |||||||||    
T  25219107 atcctctccatttataactttttccatttgttgtaatttggagagagatagacacaaaaaaaataagtggtgggtcctatcactaagtggatcccaccat 25219008  T
Q  212 catta 216  Q
    |||||    
T  25219007 catta 25219003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 106 - 216
Target Start/End: Complemental strand, 17493121 - 17493010
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaa-aaaataagtggtgggtcccatcactaggtgggtc 204  Q
    ||||||| ||||| ||||||||||| |||||  ||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||| |||| |     
T  17493121 gggtcaacatcctttccatttataactttttctatttgttgcaatttggagagagatagacacaaaaaaataagtggtgggtcctatcactaagtggatt 17493022  T
Q  205 ccaccatcatta 216  Q
    ||||||||||||    
T  17493021 ccaccatcatta 17493010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 199 - 294
Target Start/End: Complemental strand, 56563992 - 56563895
Alignment:
Q  199 tgggtcccaccatcattaattattttt-acttttt-atgtgtctttatctctctaaatggaggaaatggagagggaaataaatggagaagattttgac 294  Q
    ||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||| ||| |||||    
T  56563992 tgggtcccaccatcattgattattttttacttttttatgtgtctttatctctctaaatggagaaaatagagagggaaataaatggagaggatcttgac 56563895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 56558359 - 56558270
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    |||||| ||||||||| ||||||||||||||||  |||||||||| ||||||| |||||||||||||||||||||||| |||||||||||    
T  56558359 ttgcaagttggagagagatagacacaaaaaatagatggtgggtcctatcactaagtgggtcccaccatcattaattatattttacttttt 56558270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 240 - 295
Target Start/End: Complemental strand, 618883 - 618828
Alignment:
Q  240 tttatctctctaaatggaggaaatggagagggaaataaatggagaagattttgact 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  618883 tttatctctctaaatggaggaaatggagagggaaataaatggagaagattttgact 618828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 106 - 216
Target Start/End: Complemental strand, 28405443 - 28405332
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagac-acaaaaaataagtggtgggtcccatcactaggtgggtc 204  Q
    |||| |||||||||||||||||||||||||| |||||||| ||||||| ||||| |||||| | |||||||||||||||| ||| ||||||| |||| ||    
T  28405443 gggtaaagatcctctccatttataaatttttccatttgttacaatttgaagagagatagacaaaaaaaaataagtggtggatcctatcactaagtggatc 28405344  T
Q  205 ccaccatcatta 216  Q
    | ||||| ||||    
T  28405343 ctaccattatta 28405332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 198 - 296
Target Start/End: Complemental strand, 53325349 - 53325250
Alignment:
Q  198 gtgggtcccaccatcattaattatttttacttttt-atgtgtctttatctctctaaatggaggaaatggagagggaaataaatggagaagattttgactc 296  Q
    ||||||||||||||| || |||||||||  ||||| |||||||||||||||| ||||||||||||||||||||| |||| |||||| | |||||||||||    
T  53325349 gtgggtcccaccatccttgattattttttatttttcatgtgtctttatctctttaaatggaggaaatggagaggaaaatgaatggaaatgattttgactc 53325250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 126 - 216
Target Start/End: Original strand, 55160347 - 55160438
Alignment:
Q  126 tataaattttttcatttgttgcaatttggagagaaatagacacaaaa-aataagtggtgggtcccatcactaggtgggtcccaccatcatta 216  Q
    ||||| ||||| |||||||||||||||||| ||| |||||||||||| |||||||||||||||| ||||||| |||| ||||||||||||||    
T  55160347 tataactttttccatttgttgcaatttggaaagagatagacacaaaaaaataagtggtgggtcctatcactaagtggatcccaccatcatta 55160438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 19901913 - 19902002
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    |||||| ||||||||| ||||||||||||||||  |||||||||| | ||||| |||||||||||||||||||||||| |||||||||||    
T  19901913 ttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatattttacttttt 19902002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 106 - 216
Target Start/End: Complemental strand, 17317325 - 17317215
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagac-acaaaaaataagtggtgggtcccatcactaggtgggtc 204  Q
    |||| ||||| ||||| |||||||| ||||| |||||||||||||||||||||| |||||| | |||||||||||| | ||||| ||||||| |||| ||    
T  17317325 gggtaaagatgctctcaatttataactttttccatttgttgcaatttggagagagatagacaaaaaaaaataagtgat-ggtcctatcactaagtggatc 17317227  T
Q  205 ccaccatcatta 216  Q
    ||||||||||||    
T  17317226 ccaccatcatta 17317215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 46238903 - 46238966
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacaca 169  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||    
T  46238903 gggtcaagatcctctccatttataactttttccatttgttgcaatttggagagagatagacaca 46238966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 53526025 - 53526088
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacaca 169  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||    
T  53526025 gggtcaagatcctctccatttataactttttccatttgttgcaatttggagagagatagacaca 53526088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 197 - 257
Target Start/End: Complemental strand, 5361470 - 5361409
Alignment:
Q  197 ggtgggtcccaccatcattaattattttt-actttttatgtgtctttatctctctaaatgga 257  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  5361470 ggtgggtcccaccatcattaattattttttacttttaatgtgtctttatctctctaaatgga 5361409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 108 - 169
Target Start/End: Original strand, 28405263 - 28405324
Alignment:
Q  108 gtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacaca 169  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  28405263 gtcaagattctctccatttataatttttttcatttgttgcaatttggagagagatagacaca 28405324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 48084537 - 48084625
Alignment:
Q  161 atagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaatta-tttttactttttatgtgtctttatctct 248  Q
    ||||||| |||| ||||||||||||| | | ||||| ||||||||||||||||||||||| ||||||||||||  ||||||||||||||    
T  48084537 atagacataaaacataagtggtgggttctagcactaagtgggtcccaccatcattaattattttttactttttgcgtgtctttatctct 48084625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 55160510 - 55160446
Alignment:
Q  105 tgggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacaca 169  Q
    ||||||||||||||||||||||||||  |||| |||||||||||||||||||||| |||||||||    
T  55160510 tgggtcaagatcctctccatttataatcttttccatttgttgcaatttggagagagatagacaca 55160446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 17492939 - 17493002
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacaca 169  Q
    |||| |||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||    
T  17492939 gggtaaagatcctctccatttataactttttccatttgttgcaatttggagagagatagacaca 17493002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 151 - 232
Target Start/End: Original strand, 5763164 - 5763246
Alignment:
Q  151 ttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    ||||||||| ||||| ||||||||||  |||||||||| | ||||| |||||||||||||||||||||||| |||||||||||    
T  5763164 ttggagagagatagaaacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatattttacttttt 5763246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 23610722 - 23610633
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    |||||| ||||||||| ||||||||||||||||  |||||||||  | ||||| |||||||||||||||||||| ||| |||||||||||    
T  23610722 ttgcaagttggagagagatagacacaaaaaatagatggtgggtcataccactaagtgggtcccaccatcattaaatatattttacttttt 23610633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 34778501 - 34778412
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    |||||| ||| ||||| ||||||||||||||||  |||||| ||| | ||||| |||||||||||||||||||||||| |||||||||||    
T  34778501 ttgcaagttgaagagagatagacacaaaaaatagatggtggatcctaccactaagtgggtcccaccatcattaattatattttacttttt 34778412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 146 - 232
Target Start/End: Original strand, 3952167 - 3952254
Alignment:
Q  146 gcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    |||| ||||||||| ||||||| ||||||||  |||||||||| | ||||| ||||||| |||||||||||||||| |||||||||||    
T  3952167 gcaagttggagagagatagacaaaaaaaatagatggtgggtcctaccactaagtgggtctcaccatcattaattatattttacttttt 3952254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 5416461 - 5416549
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    |||||| ||||||||| ||||||||||||| ||  | |||||||| | ||||| |||||||||||||||||||||||| |||||||||||    
T  5416461 ttgcaagttggagagagatagacacaaaaa-tagattgtgggtcctaccactaagtgggtcccaccatcattaattatattttacttttt 5416549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 30567981 - 30567892
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    |||||| ||| ||||| ||||||||||||||||  |||||||||| | ||||| |||||| ||| ||||||||||||| |||||||||||    
T  30567981 ttgcaagttgaagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggttccatcatcattaattatattttacttttt 30567892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 161 - 245
Target Start/End: Complemental strand, 47922611 - 47922526
Alignment:
Q  161 atagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattattttt-actttttatgtgtctttatc 245  Q
    ||||||||||||| |||||| || |||||| ||||| || | ||| ||||| ||||||||||||| ||||||||||||||||||||    
T  47922611 atagacacaaaaagtaagtgatgagtcccaacactaagtcgatcctaccattattaattatttttgactttttatgtgtctttatc 47922526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 107 - 159
Target Start/End: Original strand, 25218935 - 25218987
Alignment:
Q  107 ggtcaagatcctctccatttataaattttttcatttgttgcaatttggagaga 159  Q
    |||||||||||||||||||||||| |||||  |||||||||||||||||||||    
T  25218935 ggtcaagatcctctccatttataactttttctatttgttgcaatttggagaga 25218987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 32146442 - 32146502
Alignment:
Q  109 tcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacaca 169  Q
    |||| ||||||||||||||||| ||||| |||||||||||||||| ||||| |||||||||    
T  32146442 tcaaaatcctctccatttataactttttccatttgttgcaatttgtagagagatagacaca 32146502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 145 - 254
Target Start/End: Complemental strand, 5261195 - 5261085
Alignment:
Q  145 tgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaatt-atttttactttttatgtgtcttta 243  Q
    |||||||| || ||| ||||||||||||||| ||| |||||| | |||||||  || || ||| | ||||||||| ||||||||||||||||| | ||||    
T  5261195 tgcaatttagaaagagatagacacaaaaaattagtagtgggtgctatcactaaatgagttccatcctcattaattaatttttactttttatgtattttta 5261096  T
Q  244 tctctctaaat 254  Q
    ||||| |||||    
T  5261095 tctctttaaat 5261085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 151 - 221
Target Start/End: Complemental strand, 24073689 - 24073619
Alignment:
Q  151 ttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat 221  Q
    ||||||||| |||||||||| |||||  |||||||||| | ||||| ||||||||| ||||||||||||||    
T  24073689 ttggagagagatagacacaacaaatagatggtgggtcctaccactaagtgggtcccgccatcattaattat 24073619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 144 - 225
Target Start/End: Original strand, 47922361 - 47922443
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaa-aataagtggtgggtcccatcactaggtgggtcccaccatcattaattattttt 225  Q
    |||||||||||||||| |||||||||||| ||||  |||||||||| | ||||| |||||||||| ||||  |||||||||||    
T  47922361 ttgcaatttggagagatatagacacaaaagaatagatggtgggtcctaccactaagtgggtcccatcatctataattattttt 47922443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 18207035 - 18207112
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat 221  Q
    |||||| || |||||| ||||||| ||||||||  |||||||||| | ||||| |||||||||| |||||||||||||    
T  18207035 ttgcaagttagagagagatagacaaaaaaaatagatggtgggtcctaccactaagtgggtcccatcatcattaattat 18207112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 33262547 - 33262636
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    |||||| || |||||| ||||||||||||||||  |||||| ||| | |||||  | ||||||||||||||||||||| |||||||||||    
T  33262547 ttgcaagttagagagagatagacacaaaaaatagatggtggatcctaccactaaataggtcccaccatcattaattatattttacttttt 33262636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 39862597 - 39862508
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    |||||| || |||||| ||||||||||||||||  ||||| |||| |||||||  || || ||||||||||||||||| |||||||||||    
T  39862597 ttgcaagtttgagagagatagacacaaaaaatagatggtgtgtcctatcactaaatgagttccaccatcattaattatattttacttttt 39862508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 144 - 268
Target Start/End: Original strand, 33247125 - 33247258
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttact--------ttttat 234  Q
    |||||| ||||||||| |||||||||| |||||  |||||||| | | |||||  ||||| ||||||||||||||||| ||||| |        ||||||    
T  33247125 ttgcaagttggagagagatagacacaagaaatagatggtgggttctaccactaaatgggttccaccatcattaattatattttatttttttcgattttat 33247224  T
Q  235 gtgtctttatctctctaaatggaggaaatggaga 268  Q
    ||||||||||||||| |||| || ||||||||||    
T  33247225 gtgtctttatctctccaaattgaagaaatggaga 33247258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 17317145 - 17317207
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacaca 169  Q
    |||||||||||||| |||||||||| ||||| ||||| ||| |||||||||||| |||||||||    
T  17317145 gggtcaagatcctc-ccatttataactttttccatttattgtaatttggagagagatagacaca 17317207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 271
Target Start/End: Complemental strand, 46804657 - 46804582
Alignment:
Q  198 gtgggtcccaccatcattaatta-tttttacttttta-tgtgtctttatctctctaaatggaggaaatggagaggg 271  Q
    |||||||| || ||||||||||| ||||||||||||  |||||||||||||||| ||||||  |||||||||||||    
T  46804657 gtgggtccaactatcattaattactttttacttttttgtgtgtctttatctctccaaatggtagaaatggagaggg 46804582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 302
Target Start/End: Complemental strand, 3003530 - 3003449
Alignment:
Q  221 tttttactttttatgtgtctttatctctctaaatggaggaaatggagagggaaataaatggagaagattttgactcatttaa 302  Q
    |||||||||||||||||| || |||||||| ||| ||  |||||||||  || ||||||||||| ||| || ||||||||||    
T  3003530 tttttactttttatgtgttttaatctctctcaatagaacaaatggagaaagacataaatggagatgatcttaactcatttaa 3003449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 5524374 - 5524441
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaa 174  Q
    ||||||| ||||||||||||||||||||||| |||||||| | |||| |||||| | ||||||| ||||    
T  5524374 gggtcaatatcctctccatttataaatttttccatttgtt-ccatttagagagataaagacacataaaa 5524441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 12241440 - 12241492
Alignment:
Q  181 gtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    |||||||| | ||||| |||||||||||||||||||||||| |||||||||||    
T  12241440 gtgggtcctaccactaagtgggtcccaccatcattaattatattttacttttt 12241492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 230
Target Start/End: Original strand, 12312470 - 12312558
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataag-tggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttt 230  Q
    |||||| ||||||||| ||||||| ||||||  || |||||| ||| | ||||| |||||||||| ||||||||||||| |||||||||    
T  12312470 ttgcaagttggagagagatagacaaaaaaaaatagatggtggatcctaccactaagtgggtcccatcatcattaattatattttacttt 12312558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 1871356 - 1871277
Alignment:
Q  145 tgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattatttt 224  Q
    ||||||||||||||| ||||||| |||| |||  | |||| ||| |  |||| |||||||||| ||||||||||||||||    
T  1871356 tgcaatttggagagagatagacaaaaaatatagatagtggatcctactactaagtgggtcccatcatcattaattatttt 1871277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 106 - 145
Target Start/End: Original strand, 5361370 - 5361409
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgtt 145  Q
    ||||||| ||||||||||||||||||||| ||||||||||    
T  5361370 gggtcaatatcctctccatttataaatttcttcatttgtt 5361409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 284
Target Start/End: Original strand, 12312594 - 12312649
Alignment:
Q  229 ttttatgtgtctttatctctctaaatggaggaaatggagagggaaataaatggaga 284  Q
    |||||||||||||||||||||||||| || ||||||||||   | |||||||||||    
T  12312594 ttttatgtgtctttatctctctaaattgaagaaatggagaaacacataaatggaga 12312649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #57
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 38079725 - 38079804
Alignment:
Q  154 gagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    |||||| |||||||||| |||||  |||||||||| |  |||| |||| | ||||||||||||||||| |||||||||||    
T  38079725 gagagagatagacacaagaaatagatggtgggtcctactactaagtggattccaccatcattaattatattttacttttt 38079804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #58
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 25442271 - 25442321
Alignment:
Q  234 tgtgtctttatctctctaaatggaggaaatggagagggaaataaatggaga 284  Q
    |||||||||||||||| ||||||| |||||||||| ||  |||||||||||    
T  25442271 tgtgtctttatctctccaaatggaagaaatggagaaggccataaatggaga 25442321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #59
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 31862250 - 31862296
Alignment:
Q  179 tggtgggtcccatcactaggtgggtcccaccatcattaattattttt 225  Q
    |||||| ||| | ||||| ||||||||||||||||||||||||||||    
T  31862250 tggtggatcctaccactaagtgggtcccaccatcattaattattttt 31862296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #60
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 255
Target Start/End: Original strand, 52030743 - 52030801
Alignment:
Q  198 gtgggtcccaccatcattaattatttttacttttta-tgtgtctttatctctctaaatg 255  Q
    |||||||||||||||||||||||||||||  ||||| | ||||| |||||||| |||||    
T  52030743 gtgggtcccaccatcattaattatttttaaattttattttgtctatatctctccaaatg 52030801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #61
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 23119486 - 23119543
Alignment:
Q  240 tttatctctctaaatggaggaaatggagagggaaataaatggagaagattttgactca 297  Q
    |||||||||| ||||||| |||||||||||   |||||||||||| ||| ||||||||    
T  23119486 tttatctctccaaatggaagaaatggagagactaataaatggagatgatcttgactca 23119543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #62
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 232
Target Start/End: Complemental strand, 12153198 - 12153162
Alignment:
Q  197 ggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    ||||||||||||||||||||||||| |||||||||||    
T  12153198 ggtgggtcccaccatcattaattatattttacttttt 12153162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #63
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 33841895 - 33841935
Alignment:
Q  229 ttttatgtgtctttatctctctaaatggaggaaatggagag 269  Q
    |||| ||||||||||||| || |||||||||||||||||||    
T  33841895 ttttttgtgtctttatctttccaaatggaggaaatggagag 33841935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #64
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 174
Target Start/End: Complemental strand, 37002399 - 37002332
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaa 174  Q
    ||||||| ||||||||||||||||||||| | |||||||| | |||| |||||| | ||||||| ||||    
T  37002399 gggtcaatatcctctccatttataaatttctccatttgtt-ccatttagagagataaagacacataaaa 37002332  T

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Target: chr4; HSP #65
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 253
Target Start/End: Original strand, 54997878 - 54997910
Alignment:
Q  221 tttttactttttatgtgtctttatctctctaaa 253  Q
    |||||||||||||||||||||||||||| ||||    
T  54997878 tttttactttttatgtgtctttatctctttaaa 54997910  T

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Target: chr4; HSP #66
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 174
Target Start/End: Complemental strand, 56269225 - 56269158
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaa 174  Q
    ||||||| ||||||||||||||||||||| | |||||||| | |||| |||||| | ||||||| ||||    
T  56269225 gggtcaatatcctctccatttataaatttctccatttgtt-ccatttagagagataaagacacataaaa 56269158  T

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Target: chr5 (Bit Score: 142; Significance: 2e-74; HSPs: 39)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 127 - 291
Target Start/End: Complemental strand, 41660203 - 41660038
Alignment:
Q  127 ataaattttttcatttgttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-tttt 225  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  41660203 ataaatttttccatttgttgcaatttggagagagatagacacaaaaaataagtggtgggtctcatcactaggtgggtcccaccatcattaattatttttt 41660104  T
Q  226 actttttatgtgtctttatctctctaaatggaggaaatggagagggaaataaatggagaagatttt 291  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41660103 acttcttatgtgtctttatctctctaaatggaggaaatggagagggaaataaatggagaagatttt 41660038  T

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Target: chr5; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 106 - 257
Target Start/End: Complemental strand, 36290720 - 36290568
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcc 205  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||| |||    
T  36290720 gggtcaagatcctctccatttataaatttttctatttgttgcaatttggagagagatagacacaaaaaataagtggtgggtcctatcactaagtggatcc 36290621  T
Q  206 caccatcattaattat-ttttactttttatgtgtctttatctctctaaatgga 257  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  36290620 caccatcattaattattttttactttttatgtgtctttatctctctaaatgga 36290568  T

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Target: chr5; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 106 - 257
Target Start/End: Original strand, 3041264 - 3041416
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaat-aagtggtgggtcccatcactaggtgggtc 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||  ||||||||||||| ||||||| | |||||    
T  3041264 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagagatagatacaaaaaaacaagtggtgggtcctatcactaagcgggtc 3041363  T
Q  205 ccaccatcattaattatttttactttttatgtgtctttatctctctaaatgga 257  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  3041364 ccaccatcattaattattttttatttttatgtgtctttatctctctaaatgga 3041416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 105 - 255
Target Start/End: Original strand, 2984346 - 2984497
Alignment:
Q  105 tgggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtc 204  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||| ||  ||| |||||||  ||||||    
T  2984346 tgggtcaagatcctctccatttataaattttttcatttgttgtaatttggagagagatagacacataaaataagtgatgaatcctatcactaaatgggtc 2984445  T
Q  205 ccaccatcattaatta-tttttactttttatgtgtctttatctctctaaatg 255  Q
    |||||||||||||||| |||||| ||||||||||||||||||||| ||||||    
T  2984446 ccaccatcattaattattttttattttttatgtgtctttatctctttaaatg 2984497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 101 - 257
Target Start/End: Original strand, 11960541 - 11960699
Alignment:
Q  101 aacttgggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagac-acaaaaaataagtggtgggtcccatcactaggt 199  Q
    |||| |||||||||||||||||||||||||||||||  ||||||| |||||| |||||| |||||| | |||||||||||||||||||  ||||||| ||    
T  11960541 aactggggtcaagatcctctccatttataaatttttctatttgttacaatttagagagagatagacaaaaaaaaataagtggtgggtctaatcactaagt 11960640  T
Q  200 gggtcccaccatcattaatta-tttttactttttatgtgtctttatctctctaaatgga 257  Q
    || ||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||    
T  11960641 ggatcccaccttcattaattattttttactttttatgtgtttttatctctctaaatgga 11960699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 114 - 216
Target Start/End: Complemental strand, 40162840 - 40162737
Alignment:
Q  114 atcctctccatttataaattttttcatttgttgcaatttggagagaaatagac-acaaaaaataagtggtgggtcccatcactaggtgggtcccaccatc 212  Q
    ||||||||||||||||| |||||| |||||||| |||||||| ||| |||||| | |||||||||||||||||||| ||||||| |||| ||||||||||    
T  40162840 atcctctccatttataactttttttatttgttgtaatttggaaagagatagacaaaaaaaaataagtggtgggtcctatcactaagtggatcccaccatc 40162741  T
Q  213 atta 216  Q
    ||||    
T  40162740 atta 40162737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 4895730 - 4895819
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    |||||| ||||||||| ||||||||||||||||  |||||||||| | ||||| |||||||||||||||||||||||| |||||||||||    
T  4895730 ttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatattttacttttt 4895819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 35660604 - 35660693
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    |||||| ||||||||| ||||||||||||||||  |||||||||| | ||||| |||||||||||||||||||||||| |||||||||||    
T  35660604 ttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatattttacttttt 35660693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 148 - 295
Target Start/End: Complemental strand, 17247482 - 17247332
Alignment:
Q  148 aatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttactttttatgtgtc--tttat 244  Q
    ||||| |||||| |||||| ||||||||| ||||||||| | |||| || ||| || ||| ||| ||||||||| ||||||||||||||||||  |||||    
T  17247482 aatttagagagagatagacgcaaaaaataggtggtgggttctatcattaagtgcgttccatcataattaattattttttactttttatgtgtctttttat 17247383  T
Q  245 ctctctaaatggaggaaatggagagggaaataaatggagaagattttgact 295  Q
    ||||  |||||||| |||| |||||| ||||| ||||||| ||| ||||||    
T  17247382 ctcttgaaatggagaaaatagagaggaaaatacatggagaggatcttgact 17247332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 40753157 - 40753246
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    |||||| ||||||| | ||||||||||||||||  |||||||||| | ||||| |||||||||||||||||||||||| |||||||||||    
T  40753157 ttgcaagttggagaaagatagacacaaaaaatatatggtgggtcctaccactaagtgggtcccaccatcattaattatattttacttttt 40753246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 22544604 - 22544521
Alignment:
Q  19 taaccgctctttttgcgcatgtctttattgttgttgcatgctaataattagaaggaaacaaattggtccccctagtttatttaa 102  Q
    |||||||||||||||| | ||||||  |||||| |||||||||||||||||||||||| |||||||||  |||| |||||||||    
T  22544604 taaccgctctttttgctcgtgtcttctttgttgctgcatgctaataattagaaggaaataaattggtcgtcctattttatttaa 22544521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 151 - 232
Target Start/End: Complemental strand, 14349876 - 14349794
Alignment:
Q  151 ttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    ||||||||| | ||||||||||||||  |||||||||| | ||||| |||||||||||||||||||||||| |||||||||||    
T  14349876 ttggagagagacagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatattttacttttt 14349794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 151 - 232
Target Start/End: Original strand, 32129619 - 32129701
Alignment:
Q  151 ttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    ||||||||| |||||||| |||||||  |||||||||| | ||||| |||||||||||||||||||||||| |||||||||||    
T  32129619 ttggagagagatagacaccaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatattttacttttt 32129701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 11775873 - 11775784
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    |||||| ||||||||| ||||||||||||||||  |||||| ||| | ||||| |||||||||||| ||||||||||| |||||||||||    
T  11775873 ttgcaagttggagagagatagacacaaaaaatagatggtggatcctaccactaagtgggtcccaccgtcattaattatattttacttttt 11775784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 18625416 - 18625493
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat 221  Q
    |||||| ||||||||| | ||||||||||||||  |||||||||| | ||||| ||||||||||||||||||||||||    
T  18625416 ttgcaagttggagagagaaagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 18625493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 144 - 221
Target Start/End: Complemental strand, 37266811 - 37266734
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat 221  Q
    |||||| ||||||||| ||||||||||||||||  |||||||||  | ||||| ||||||||||||||||||||||||    
T  37266811 ttgcaagttggagagagatagacacaaaaaatagatggtgggtcataccactaagtgggtcccaccatcattaattat 37266734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 40162666 - 40162729
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacaca 169  Q
    ||||||||||||||||||||||||| |||||  ||||||||||||||| ||||| |||||||||    
T  40162666 gggtcaagatcctctccatttataactttttctatttgttgcaatttgaagagagatagacaca 40162729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 157
Target Start/End: Complemental strand, 8675134 - 8675088
Alignment:
Q  111 aagatcctctccatttataaattttttcatttgttgcaatttggaga 157  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  8675134 aagatcctctccatttataacttttttcatttgttgcaatttggaga 8675088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 143 - 254
Target Start/End: Original strand, 28043509 - 28043621
Alignment:
Q  143 gttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattatttt-tactttttatgtgtctt 241  Q
    |||||||||| |||||| ||| |||  || || |||||||||| || |||| || ||  ||| ||  ||||||||||||||| |||||||||||||||||    
T  28043509 gttgcaatttagagagagatatacaacaacaaaaagtggtgggccctatcattaagtaagtctcattatcattaattattttttactttttatgtgtctt 28043608  T
Q  242 tatctctctaaat 254  Q
    |||||||||||||    
T  28043609 tatctctctaaat 28043621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 34827271 - 34827183
Alignment:
Q  145 tgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    ||||| ||||||||| ||||||| ||||||||  |||||| ||| | ||||| ||||||||||||||| |||||||| |||||||||||    
T  34827271 tgcaagttggagagagatagacaaaaaaaatagatggtggatcctaccactaagtgggtcccaccatctttaattatattttacttttt 34827183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 255
Target Start/End: Complemental strand, 43222189 - 43222094
Alignment:
Q  161 atagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattatttt-tactttttatgtgtctttatctctctaaatg 255  Q
    ||||||||||||||||  |||||||||  |||| ||  ||| ||||||||||||||||||||||  |  |||||||||||||||||||||| ||||    
T  43222189 atagacacaaaaaatagatggtgggtcttatcattaaatggatcccaccatcattaattattttcaaaattttatgtgtctttatctctctgaatg 43222094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 144 - 268
Target Start/End: Complemental strand, 13032198 - 13032064
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttact---------tttta 233  Q
    |||||| ||||||||| |||||||||| |||||  ||||| |||| | |||||  ||||||||||||||||||||||| ||||| |         |||||    
T  13032198 ttgcaagttggagagagatagacacaagaaatagatggtgagtcctaccactaaatgggtcccaccatcattaattatattttatttttttaagatttta 13032099  T
Q  234 tgtgtctttatctctctaaatggaggaaatggaga 268  Q
    |||||||||||||||| |||| || ||||||||||    
T  13032098 tgtgtctttatctctccaaattgaagaaatggaga 13032064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 284
Target Start/End: Complemental strand, 10173985 - 10173877
Alignment:
Q  183 gggtcccatcactaggtgggtcccaccatcattaattattttt-acttttta------tgtgtctttatctctctaaatggaggaaatggagagggaaat 275  Q
    |||||| |||||||  ||||| | ||||||||||||||||||| |||||||       |||||||||||||||| ||||| |||||||||||| ||| ||    
T  10173985 gggtcctatcactaaatgggttctaccatcattaattattttttacttttttcaaaattgtgtctttatctctccaaatgaaggaaatggagaaggacat 10173886  T
Q  276 aaatggaga 284  Q
    |||||||||    
T  10173885 aaatggaga 10173877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 10362010 - 10362135
Alignment:
Q  145 tgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattatttttactttttatgtgtctttat 244  Q
    ||||||| ||||||| ||||| ||| |||||  || |||| ||| | || || ||||||| |||| |||||||||||||||   |||| ||| ||||| |    
T  10362010 tgcaattaggagagagatagagacataaaattggtagtggatcctaccattaagtgggtctcaccgtcattaattattttttacttttgtgtctctttgt 10362109  T
Q  245 ctctctaaatggaggaaatggagagg 270  Q
    ||||||||||||  ||||||||||||    
T  10362110 ctctctaaatggtagaaatggagagg 10362135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 36290528 - 36290596
Alignment:
Q  105 tgggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaa 174  Q
    |||||||| |||||||||||||||||||||||||||||||| | |||| |||||| | ||||||| ||||    
T  36290528 tgggtcaatatcctctccatttataaattttttcatttgtt-ccatttagagagataaagacacataaaa 36290596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 4592858 - 4592791
Alignment:
Q  166 cacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    |||||||||||  |||||||||  | ||||| |||||||||||||||||||||||| |||||||||||    
T  4592858 cacaaaaaatagatggtgggtcttaccactaagtgggtcccaccatcattaattatattttacttttt 4592791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 254
Target Start/End: Original strand, 27428877 - 27428985
Alignment:
Q  145 tgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattatttttac-tttttatgtgtcttta 243  Q
    ||||||||||| ||| ||||||||||||||||  |||||  ||| | || || ||| || |||||||||||||   ||||||| ||||||||||||| ||    
T  27428877 tgcaatttggaaagagatagacacaaaaaatagatggtgaatcctaccattaagtgagttccaccatcattaa--ctttttacttttttatgtgtctcta 27428974  T
Q  244 tctctctaaat 254  Q
    |||||||||||    
T  27428975 tctctctaaat 27428985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 29341074 - 29340999
Alignment:
Q  145 tgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaatta 220  Q
    ||||||||||||||| ||||||||| ||||||  | |||||||| |  | || |||||||||||||||||||||||    
T  29341074 tgcaatttggagagagatagacacagaaaatagatagtgggtcctactattaagtgggtcccaccatcattaatta 29340999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 156
Target Start/End: Complemental strand, 2883825 - 2883775
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggag 156  Q
    |||| |||||||||||||||||| | |||||||||||||||||||| ||||    
T  2883825 gggttaagatcctctccatttattacttttttcatttgttgcaattaggag 2883775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 216
Target Start/End: Original strand, 8674987 - 8675069
Alignment:
Q  139 atttgttgcaatttggagagaaatagacacaa-----aaaataagtggtgggtcccatcactaggtgggtcccaccatcatta 216  Q
    ||||||||||||||||| ||| ||||||| ||     |||||||||||||||||| ||||| | |||| ||||||||||||||    
T  8674987 atttgttgcaatttggaaagagatagacaaaaaaaataaaataagtggtgggtcctatcacgaagtggatcccaccatcatta 8675069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 268
Target Start/End: Complemental strand, 128202 - 128162
Alignment:
Q  228 tttttatgtgtctttatctctctaaatggaggaaatggaga 268  Q
    ||||| ||||| |||||||||||||||||||||||||||||    
T  128202 tttttttgtgtttttatctctctaaatggaggaaatggaga 128162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 337
Target Start/End: Complemental strand, 22544526 - 22544486
Alignment:
Q  297 atttaacttagggtcaccactcatggaacttcaatttctac 337  Q
    |||||| ||||||||||||||||||||||||| ||||||||    
T  22544526 atttaaattagggtcaccactcatggaacttcgatttctac 22544486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 248
Target Start/End: Complemental strand, 27721168 - 27721124
Alignment:
Q  205 ccaccatcattaatta-tttttactttttatgtgtctttatctct 248  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||    
T  27721168 ccaccatcattaattactttttactttttacgtgtctttatctct 27721124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 153
Target Start/End: Complemental strand, 31110342 - 31110306
Alignment:
Q  117 ctctccatttataaattttttcatttgttgcaatttg 153  Q
    ||||||||||||||||||||| |||||||||||||||    
T  31110342 ctctccatttataaatttttttatttgttgcaatttg 31110306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 224
Target Start/End: Complemental strand, 31279990 - 31279914
Alignment:
Q  148 aatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattatttt 224  Q
    |||||||||||   |||||||| ||||||| | |||||||| |||| || |||||||| ||||| ||||||||||||    
T  31279990 aatttggagagtgctagacacataaaataaattgtgggtcctatcattatgtgggtcctaccataattaattatttt 31279914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 232
Target Start/End: Complemental strand, 39902488 - 39902406
Alignment:
Q  151 ttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    ||||||||| ||| |||||| |||||  |||||||||| | |||||  ||| | ||||||||||||||||| |||||||||||    
T  39902488 ttggagagagataaacacaagaaatagatggtgggtcctaccactaaatggattccaccatcattaattatattttacttttt 39902406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 284
Target Start/End: Complemental strand, 4423100 - 4423059
Alignment:
Q  243 atctctctaaatggaggaaatggagagggaaataaatggaga 284  Q
    ||||||||||||| |||||||| ||||| |||||||||||||    
T  4423100 atctctctaaatgaaggaaatgaagaggaaaataaatggaga 4423059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 31156625 - 31156545
Alignment:
Q  145 tgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattattttta 226  Q
    ||||||||| | ||| |||||||||||||||||||||||| | | |||| || ||| ||| ||| ||||||||||| |||||    
T  31156625 tgcaatttgaaaagagatagacacaaaaaataagtggtggat-ctatcattaagtgagtctcactatcattaattaatttta 31156545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 174
Target Start/End: Complemental strand, 3041455 - 3041388
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaa 174  Q
    ||||||| || |||| |||||||||||||||||||||||| | |||| |||||| | ||||||| ||||    
T  3041455 gggtcaatattctcttcatttataaattttttcatttgtt-ccatttagagagataaagacacataaaa 3041388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 124; Significance: 1e-63; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 105 - 255
Target Start/End: Original strand, 26749504 - 26749655
Alignment:
Q  105 tgggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtc 204  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||| |||||||    
T  26749504 tgggtcaatatcctctccatttataaattttttcatttgttgcaatttggagagagatagacacaaaaaataagtgatgggtcctatcactaagtgggtc 26749603  T
Q  205 ccaccatcattaatta-tttttactttttatgtgtctttatctctctaaatg 255  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26749604 ccaccatcattaattattttttactttttatgtgtctttatctctctaaatg 26749655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 106 - 268
Target Start/End: Original strand, 1937111 - 1937275
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacac-aaaaaataagtggtgggtcccatcactaggtgggtc 204  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||| |||||| ||||||||||||| ||||||| | |||||    
T  1937111 gggtcaagatcctctccatttataaatttttcaatttgttgcaatttggagagagatagacacaaaaaaacaagtggtgggtcctatcactaagcgggtc 1937210  T
Q  205 ccaccatcattaatta-tttttactttttatgtgtctttatctctctaaatggaggaaatggaga 268  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||  |||||||||    
T  1937211 ccaccatcattaattattttttactttttatgtgtctctatctctctaaatggaacaaatggaga 1937275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 114 - 266
Target Start/End: Complemental strand, 34612674 - 34612520
Alignment:
Q  114 atcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatca 213  Q
    ||||||||||||||||||||||| ||||| ||| ||||| |||||| |||||||||||||||||||||||||||| ||||||| ||||||| ||||||||    
T  34612674 atcctctccatttataaatttttccatttattgtaatttagagagagatagacacaaaaaataagtggtgggtcctatcactaagtgggtctcaccatca 34612575  T
Q  214 ttaattat--ttttactttttatgtgtctttatctctctaaatggaggaaatgga 266  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||  |||||||    
T  34612574 ttaattatttttttactttttatgtgtctttatctctctaaatggaacaaatgga 34612520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 43972969 - 43972883
Alignment:
Q  19 taaccgctctttttgcgcatgtctttattgttgttgcatgctaataattagaaggaaacaaattggtccccctagtttatttaactt 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43972969 taaccgctctttttgcgcatgtctttattgttgttgcatgctaataattagaaggaaacaaattggtccccctagtttatttaactt 43972883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 206 - 297
Target Start/End: Complemental strand, 24241593 - 24241501
Alignment:
Q  206 caccatcattaattattttt-actttttatgtgtctttatctctctaaatggaggaaatggagagggaaataaatggagaagattttgactca 297  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24241593 caccatcattaattattttttactttttatgtgtctttatctctctaaatggaggaaatggagagggaaataaatggagaagatcttgactca 24241501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 111 - 216
Target Start/End: Original strand, 17867621 - 17867727
Alignment:
Q  111 aagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacac-aaaaaataagtggtgggtcccatcactaggtgggtcccacc 209  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||| |||| |||||||    
T  17867621 aagatcctctccatttataactttttccatttgttgcaatttggagagagatagacacaaaaaaataagtggtgggtcctatcactaagtggatcccacc 17867720  T
Q  210 atcatta 216  Q
    |||||||    
T  17867721 atcatta 17867727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 106 - 216
Target Start/End: Complemental strand, 30905080 - 30904969
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaataga-cacaaaaaataagtggtgggtcccatcactaggtgggtc 204  Q
    |||| |||||||||||||||||||| ||||| |||||||||||||||||||||| |||||  | |||||||||||||||||||| || |||| |||| ||    
T  30905080 gggtaaagatcctctccatttataattttttccatttgttgcaatttggagagagatagataaaaaaaaataagtggtgggtcctattactaagtggatc 30904981  T
Q  205 ccaccatcatta 216  Q
    ||||||||||||    
T  30904980 ccaccatcatta 30904969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 106 - 190
Target Start/End: Complemental strand, 24241782 - 24241698
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaa-aaaataagtggtgggtccca 190  Q
    ||||||||||||||||||||||||||||||| |||||||||||| || |||||| |||||||||| ||||||||||| ||||||||    
T  24241782 gggtcaagatcctctccatttataaatttttccatttgttgcaagttagagagagatagacacaaaaaaataagtgg-gggtccca 24241698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 30426664 - 30426753
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    |||||| ||||||||| ||||||||||||||||  |||||||||| | ||||| |||||||||||||||||||||||| |||||||||||    
T  30426664 ttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatattttacttttt 30426753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 118 - 225
Target Start/End: Complemental strand, 11090612 - 11090501
Alignment:
Q  118 tctccatttataaattttttcatttgttgcaatttggagagaaatagac-----acaaaaaataagtggtgggtcccatcactaggtgggtcccaccatc 212  Q
    |||||||||||||||||||  ||||||||||||||||||||  ||||||     | |||||||||||||||||||| |||| || |||| ||||||||||    
T  11090612 tctccatttataaatttttcaatttgttgcaatttggagagtgatagacaaaaaaaaaaaaataagtggtgggtcctatcattaagtggatcccaccatc 11090513  T
Q  213 attaattattttt 225  Q
    ||| |||||||||    
T  11090512 att-attattttt 11090501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 145 - 257
Target Start/End: Original strand, 3763518 - 3763631
Alignment:
Q  145 tgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaatta-tttttactttttatgtgtcttta 243  Q
    ||||||||||||||   |||||| |||||| | ||||||||||| | || || |||||| ||||| |||||||||  ||||||||||||||| |||||||    
T  3763518 tgcaatttggagagtggtagacaaaaaaaaaaggtggtgggtcctaccattaagtgggttccaccgtcattaattgctttttactttttatgagtcttta 3763617  T
Q  244 tctctctaaatgga 257  Q
    ||||| ||||||||    
T  3763618 tctctttaaatgga 3763631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 144 - 221
Target Start/End: Complemental strand, 28069799 - 28069722
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat 221  Q
    |||||| ||||||||| | ||||||||||||||  |||||||||| | ||||| ||||||||||||||||||||||||    
T  28069799 ttgcaagttggagagagaaagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 28069722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 30796356 - 30796257
Alignment:
Q  145 tgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttactttttatgtgtcttta 243  Q
    ||||||||| | ||| |||||| | |||||||| ||| |||||  ||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||    
T  30796356 tgcaatttgaaaagagatagacgctaaaaataaatggcgggtct-atcactaagtgggtcccaccatcattaattattttttactttttgtgtgtcttta 30796258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 17867798 - 17867735
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacaca 169  Q
    |||| |||||||||||||||||||| ||||| ||||||||| |||||||||||| |||||||||    
T  17867798 gggttaagatcctctccatttataactttttccatttgttgaaatttggagagagatagacaca 17867735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 210 - 270
Target Start/End: Complemental strand, 20168113 - 20168051
Alignment:
Q  210 atcattaattattttt--actttttatgtgtctttatctctctaaatggaggaaatggagagg 270  Q
    ||||||||||||||||  |||||||||| || |||||||||||||||||||||||||||||||    
T  20168113 atcattaattatttttttactttttatgggtttttatctctctaaatggaggaaatggagagg 20168051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 225
Target Start/End: Complemental strand, 45113351 - 45113269
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaa-aataagtggtgggtcccatcactaggtgggtcccaccatcattaattattttt 225  Q
    |||||||||||||||| |||||||||||| ||||  |||||||||| | ||||| ||| |||||| |||||||||||||||||    
T  45113351 ttgcaatttggagagacatagacacaaaagaatagatggtgggtccaaccactaagtgtgtcccatcatcattaattattttt 45113269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 297 - 337
Target Start/End: Complemental strand, 43972891 - 43972851
Alignment:
Q  297 atttaacttagggtcaccactcatggaacttcaatttctac 337  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  43972891 atttaacttagggtcaccactcatggaacttcaatttctac 43972851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 246
Target Start/End: Complemental strand, 24241705 - 24241658
Alignment:
Q  200 gggtcccaccatcattaattattttt-actttttatgtgtctttatct 246  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||    
T  24241705 gggtcccaccatcattaattattttttactttttatgtgtctttatct 24241658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 221
Target Start/End: Complemental strand, 36991436 - 36991359
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat 221  Q
    |||||| ||||||||| ||||||| || |||||  || ||||||| | ||||| ||||||||||||||||||||||||    
T  36991436 ttgcaagttggagagagatagacataagaaatagatgatgggtcctaccactaagtgggtcccaccatcattaattat 36991359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 255
Target Start/End: Complemental strand, 6399987 - 6399892
Alignment:
Q  161 atagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttactttttatgtgtctttatctctctaaatg 255  Q
    ||||||||||||||||  |||||||||  || || | |||| |||||  |||||||||||| ||||||||||| ||||| |||||||||| |||||    
T  6399987 atagacacaaaaaatagatggtgggtcttattaccaagtggatcccattatcattaattattttttactttttttgtgtttttatctctccaaatg 6399892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 169
Target Start/End: Original strand, 30904902 - 30904961
Alignment:
Q  110 caagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacaca 169  Q
    ||||||||||||||||||||| ||||| ||||| || |||||| |||||| |||||||||    
T  30904902 caagatcctctccatttataactttttccatttattacaatttagagagagatagacaca 30904961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 10672509 - 10672584
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat 221  Q
    |||||| |||||||||  |||||||||||||||  |||||| ||| | ||||| ||| ||||||||||||||||||||    
T  10672509 ttgcaagttggagaga--tagacacaaaaaatagatggtggatcctaccactaagtgagtcccaccatcattaattat 10672584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 257
Target Start/End: Original strand, 28403151 - 28403261
Alignment:
Q  148 aatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttactttttatgtgtctttatct 246  Q
    ||||| || |||||||||||||||||||| |||| || ||||| ||||| |||| || || | ||||||| ||| |||||  |||| ||| || ||||||    
T  28403151 aatttagaaagaaatagacacaaaaaataggtggcggatcccaacactaagtggatctcatcttcattaaatatattttatattttgtgtatccttatct 28403250  T
Q  247 ctctaaatgga 257  Q
    |||||||||||    
T  28403251 ctctaaatgga 28403261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 232
Target Start/End: Original strand, 40695249 - 40695331
Alignment:
Q  151 ttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    ||||||||| ||||||||||||||||  |||| ||||| | ||||| ||| || |||||||||||| |||| |||||||||||    
T  40695249 ttggagagagatagacacaaaaaatagatggtaggtcctaccactaagtgagttccaccatcattagttatattttacttttt 40695331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 41511342 - 41511253
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    |||||| ||||| ||| ||||| | ||||||||  | |||||||| ||||||| |||| | ||||||||||||||||| |||||||||||    
T  41511342 ttgcaagttggaaagagatagatataaaaaatagatagtgggtcctatcactaagtggtttccaccatcattaattatattttacttttt 41511253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 266
Target Start/End: Complemental strand, 21492797 - 21492730
Alignment:
Q  201 ggtcccaccatcattaattatttttac--tttttatgtgtctttatctctctaaatggaggaaatgga 266  Q
    |||||||||||||||| ||||||| |   ||||| |||||||||||||||| ||||||| ||||||||    
T  21492797 ggtcccaccatcattacttattttcaagatttttgtgtgtctttatctctccaaatggaagaaatgga 21492730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 10652612 - 10652702
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaat--tatttttacttttt 232  Q
    |||||| ||||||||| ||||| |||||||||   |||||||||  |  ||||  ||||||||||||||||||||  ||||||||||||||    
T  10652612 ttgcaagttggagagagatagatacaaaaaattgatggtgggtcatactactaattgggtcccaccatcattaattatatttttacttttt 10652702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 115 - 174
Target Start/End: Complemental strand, 26749687 - 26749629
Alignment:
Q  115 tcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaa 174  Q
    ||||||||||||||||||||||||||||||| | |||| |||||| | ||||||| ||||    
T  26749687 tcctctccatttataaattttttcatttgtttc-atttagagagataaagacacataaaa 26749629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 177
Target Start/End: Original strand, 11090445 - 11090511
Alignment:
Q  111 aagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaataa 177  Q
    ||||| || ||||||||||| |||||  |||||||||||||| |||||| ||||||| ||| |||||    
T  11090445 aagattctttccatttataactttttctatttgttgcaatttagagagagatagacaaaaataataa 11090511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 174
Target Start/End: Original strand, 34612493 - 34612557
Alignment:
Q  109 tcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaa 174  Q
    |||| ||||||||||||||||||||||| |||||||| | |||| |||||| | ||||||| ||||    
T  34612493 tcaatatcctctccatttataaatttttccatttgtt-ccatttagagagataaagacacataaaa 34612557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 266
Target Start/End: Complemental strand, 13035163 - 13035103
Alignment:
Q  206 caccatcattaattatttttactttttatgtgtctttatctctctaaatggaggaaatgga 266  Q
    ||||||||||||||||||| |   ||| ||||||||||||| ||||||| || ||||||||    
T  13035163 caccatcattaattattttcaagatttttgtgtctttatctttctaaatagaagaaatgga 13035103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 28318934 - 28318986
Alignment:
Q  181 gtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    |||||||| | ||||| |||||||| ||||||||||||||| |||||||||||    
T  28318934 gtgggtcctaccactaagtgggtccaaccatcattaattatattttacttttt 28318986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 233
Target Start/End: Original strand, 44859188 - 44859252
Alignment:
Q  170 aaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttta 233  Q
    |||||||  |||||||| | | ||||| |||||||||||||||||||||||| ||||| ||||||    
T  44859188 aaaaatagatggtgggttctaccactaagtgggtcccaccatcattaattatattttatttttta 44859252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 106 - 268
Target Start/End: Complemental strand, 42613198 - 42613035
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||| ||||||| ||||||||    
T  42613198 gggtcaagatcctctccatttataaattttttcatttgttgcaatttgaagagagatagacaaaaaaaataagtggtgggtcctatcactaagtgggtcc 42613099  T
Q  206 caccatcattaattat-ttttactttttatgtgtctttatctctctaaatggaggaaatggaga 268  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| ||  |||||||||    
T  42613098 caccatcattaattattttttactttttatgtgtctttatctctctaaatagaacaaatggaga 42613035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 109 - 268
Target Start/End: Original strand, 49679230 - 49679390
Alignment:
Q  109 tcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||  ||||||||||    
T  49679230 tcaagatcctctccatttataaattttttcatttgttgcaatttggagagagatagacacaaaaaataagtggcgggtcctatcactaaatgggtcccac 49679329  T
Q  209 catcattaatta-tttttactttttatgtgtctttatctctctaaatggaggaaatggaga 268  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |  |||||||||    
T  49679330 catcattaattattttttactttttatgtgtctttatctctctaaatgaaacaaatggaga 49679390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 111 - 268
Target Start/End: Original strand, 31523630 - 31523788
Alignment:
Q  111 aagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccacca 210  Q
    |||||||||||||||||||||||| | ||||| |||||||||||||||| |||||||||||||||||||||||||||| || |||| |||||||||||||    
T  31523630 aagatcctctccatttataaatttctccatttattgcaatttggagagagatagacacaaaaaataagtggtgggtcctattactaagtgggtcccacca 31523729  T
Q  211 tcattaatta-tttttactttttatgtgtctttatctctctaaatggaggaaatggaga 268  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||    
T  31523730 tcattaattattttttactttttatgtgtctttatctctctaaatggaacaaatggaga 31523788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 106 - 268
Target Start/End: Complemental strand, 27959208 - 27959062
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcc 205  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||                 ||    
T  27959208 gggtcaagatcctctccatttataaatttttccatttgttgcaatttggggagagatagacacaaaaaataagtggtgggt-----------------cc 27959126  T
Q  206 caccatcattaatta-tttttactttttatgtgtctttatctctctaaatggaggaaatggaga 268  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||  |||||||||    
T  27959125 caccatcattaattattttttactttttatgtgtatttatctctctaaatggaacaaatggaga 27959062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 199 - 268
Target Start/End: Complemental strand, 3009264 - 3009194
Alignment:
Q  199 tgggtcccaccatcattaattattttt-actttttatgtgtctttatctctctaaatggaggaaatggaga 268  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||    
T  3009264 tgggtcccaccatcattaattattttttactttttatgtgtctttatctctctaaatggaacaaatggaga 3009194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 144 - 288
Target Start/End: Original strand, 43719942 - 43720097
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttact----------tttt 232  Q
    |||||| ||||||||| ||||||||||||||||| | |||||||| | ||||| |||||||||||||||||||||||| ||||| |          ||||    
T  43719942 ttgcaagttggagagagatagacacaaaaaataaattgtgggtcctaccactaagtgggtcccaccatcattaattatattttattttttttaagatttt 43720041  T
Q  233 atgtgtctttatctctctaaatggaggaaatggagagggaaataaatggagaagat 288  Q
    ||||||||||||||||| |||| || ||||||||||   | |||||||||||||||    
T  43720042 atgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaagat 43720097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 113 - 225
Target Start/End: Complemental strand, 45799193 - 45799076
Alignment:
Q  113 gatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaa-----aaaataagtggtgggtcccatcactaggtgggtccca 207  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||| ||||| | ||     |||||||||| ||||||| ||||||| |||  | |||    
T  45799193 gatcctctccatttataacatttttcatttgttgcaatttggagagagatagataaaaaaaataaaataagtgatgggtcctatcactaagtgaattcca 45799094  T
Q  208 ccatcattaattattttt 225  Q
    ||||||||| ||||||||    
T  45799093 ccatcattatttattttt 45799076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 104 - 216
Target Start/End: Original strand, 53642067 - 53642178
Alignment:
Q  104 ttgggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggt 203  Q
    |||||| ||||| |||||||||||||| |||||  ||||||||||||||||||||| ||||||| |||||| ||||||||||| |  ||| || |||| |    
T  53642067 ttgggttaagattctctccatttataattttttctatttgttgcaatttggagagagatagaca-aaaaaaaaagtggtgggttctgtcattaagtggat 53642165  T
Q  204 cccaccatcatta 216  Q
     ||||||||||||    
T  53642166 tccaccatcatta 53642178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 19830426 - 19830503
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat 221  Q
    |||||| |||| |||||||||||||||||||||  |||||||||| | || || ||||||||||||||||||||||||    
T  19830426 ttgcaagttggggagaaatagacacaaaaaatagatggtgggtcctaccattaagtgggtcccaccatcattaattat 19830503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 27033731 - 27033642
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    |||||| ||||||||| |||||||||| |||||  |||||||||| | ||||| |||| ||||||||||||||||||| |||||||||||    
T  27033731 ttgcaagttggagagagatagacacaagaaatagatggtgggtcctaccactaagtggatcccaccatcattaattatattttacttttt 27033642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 145 - 299
Target Start/End: Original strand, 28229398 - 28229548
Alignment:
Q  145 tgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattatttttactttttatgtgtctttat 244  Q
    ||||||| ||| ||| |||||||||||||||| |||||| |||| |||| ||  || ||| |||||||||||||| |||    ||||| ||||||| |||    
T  28229398 tgcaattaggaaagatatagacacaaaaaataggtggtgagtcctatcattaaatgagtctcaccatcattaatttttt----tttttttgtgtctatat 28229493  T
Q  245 ctctctaaatggaggaaatggagagggaaataaatggagaagattttgactcatt 299  Q
    ||||||||||||| |||||||| | |  | |||||||||| ||| || |||||||    
T  28229494 ctctctaaatggaagaaatggacaagagattaaatggagaggatcttaactcatt 28229548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 34373911 - 34373822
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    |||||| ||||||||| ||||||||||||||||  |||||||||| | |||||  | ||||||||||||||||||||| |||||||||||    
T  34373911 ttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaattaggtcccaccatcattaattatattttacttttt 34373822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 294
Target Start/End: Complemental strand, 48084900 - 48084738
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaa-aataagtggtgggtcccatcactaggtgggtcccaccatcattaattattttt-----------actttt 231  Q
    ||||||||||| |||| |||||||||||| ||||  |||||||||| | ||||| |||||||||| |||||||||||||||||           |  |||    
T  48084900 ttgcaatttggggagagatagacacaaaagaatagatggtgggtccaaccactaagtgggtcccatcatcattaattattttttatttttttcaaaattt 48084801  T
Q  232 tatgtgtctttatctctctaaatggaggaaatggagagggaaataaatggagaagattttgac 294  Q
    | ||||||| |||||||| ||||||  |||||||||| ||| ||||||||||| |||||||||    
T  48084800 tgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatggagaggattttgac 48084738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 2230063 - 2229974
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    |||||| ||||||||| ||||||||||||||||  || ||||||| | ||||| |||| | ||||||||||||||||| |||||||||||    
T  2230063 ttgcaagttggagagagatagacacaaaaaatagatgatgggtcctaccactaagtggtttccaccatcattaattatattttacttttt 2229974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 28792331 - 28792384
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagaga 159  Q
    |||| ||||||||||||||||||||  |||||||||||||||||||||||||||    
T  28792331 gggtaaagatcctctccatttataatatttttcatttgttgcaatttggagaga 28792384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 34373597 - 34373669
Alignment:
Q  161 atagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    |||||||| |||||||  |||||||||| | ||||| |||||||||||||||||||||||| |||||||||||    
T  34373597 atagacactaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatattttacttttt 34373669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 151 - 232
Target Start/End: Complemental strand, 46167466 - 46167384
Alignment:
Q  151 ttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    ||||||||| ||||||||||||||||  |||||||||| | ||||| |||| ||| ||||| ||||||||| |||||||||||    
T  46167466 ttggagagagatagacacaaaaaatatatggtgggtcctaccactaagtggatcctaccattattaattatattttacttttt 46167384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 144 - 284
Target Start/End: Original strand, 550811 - 550962
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttact----------tttt 232  Q
    |||||||||||||| | ||| | ||||||||||  |||||| ||| |||| || |||||||||||||| |||| |||| |||||||          ||||    
T  550811 ttgcaatttggagaaagatatatacaaaaaatagatggtggatcctatcattaagtgggtcccaccattattatttatattttacttttttaaaaatttt 550910  T
Q  233 atgtgtctttatctctctaaatggaggaaatggagagggaaataaatggaga 284  Q
    |||| |||||||||||| ||||||| ||||||||||  || |||||||||||    
T  550911 atgtatctttatctctccaaatggaagaaatggagaaagacataaatggaga 550962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 7568998 - 7569075
Alignment:
Q  19 taaccgctctttttgcgcatgtct--ttattgttgttgcatgctaat---aattagaaggaaacaaattggtccccct 91  Q
    ||||| |||||||||||| |||||  || ||||||||||||||||||   ||||||||||||| ||||||||||||||    
T  7568998 taaccactctttttgcgcctgtctcttttttgttgttgcatgctaataataattagaaggaaataaattggtccccct 7569075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 28219584 - 28219540
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaat 150  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||    
T  28219584 gggtcaagatcctctccatttataaatttttccatttgttccaat 28219540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 29586322 - 29586266
Alignment:
Q  228 tttttatgtgtctttatctctctaaatggaggaaatggagagggaaataaatggaga 284  Q
    ||||| |||||||||||||||||||||||| |||||||||||   ||||||||||||    
T  29586322 tttttttgtgtctttatctctctaaatggatgaaatggagagaataataaatggaga 29586266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 217
Target Start/End: Complemental strand, 40851854 - 40851781
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaa 217  Q
    |||||| ||||||| | ||||||||||||||||  |||||||| | | ||||| |||||||| |||||||||||    
T  40851854 ttgcaagttggagaaagatagacacaaaaaatagatggtgggttcaaccactaagtgggtcctaccatcattaa 40851781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 296
Target Start/End: Complemental strand, 49341330 - 49341230
Alignment:
Q  198 gtgggtcccaccatcattaattatt--tttactttttatgtgtctttatctctctaaatggaggaaatggagagggaaataaatggagaagattttgact 295  Q
    |||| ||||||||| ||||||||||  |||||||||||||||| |||||||||  ||||| || ||||||| |  ||  |||||||||| |||||| |||    
T  49341330 gtggatcccaccattattaattattattttactttttatgtgtttttatctcttcaaatgcagcaaatggaaaaagacttaaatggagatgattttaact 49341231  T
Q  296 c 296  Q
    |    
T  49341230 c 49341230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 225
Target Start/End: Original strand, 40810353 - 40810432
Alignment:
Q  147 caatttggagagaaatagacacaaaa-aataagtggtgggtcccatcactaggtgggtcccaccatcattaattattttt 225  Q
    ||||||||||||| ||| ||| |||| ||||  |||||||||  | ||||| |||||||||| |||||||||||||||||    
T  40810353 caatttggagagagataaacaaaaaagaatagatggtgggtctaaccactaagtgggtcccatcatcattaattattttt 40810432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 254
Target Start/End: Original strand, 51982581 - 51982692
Alignment:
Q  145 tgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaatta-tttttact-ttttatgtgtcttt 242  Q
    ||||||||||||||| ||||| ||| ||||||  | |||||| | |||| || ||| || | | |||||||||||| |||||||| |||| |||||||||    
T  51982581 tgcaatttggagagagatagatacataaaatagttagtgggttctatcattaagtgagttctatcatcattaattactttttactcttttgtgtgtcttt 51982680  T
Q  243 atctctctaaat 254  Q
    ||||||| ||||    
T  51982681 atctctccaaat 51982692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 268
Target Start/End: Complemental strand, 32577567 - 32577477
Alignment:
Q  178 gtggtgggtcccatcactaggtgggtcccaccatcattaattatttttactttttatgtgtctttatctctctaaatggaggaaatggaga 268  Q
    ||||||||||| |||| ||  || || ||||||||||||||| |||| |   ||| |||||||||||||||| |||| || ||||||||||    
T  32577567 gtggtgggtcctatcattaaatgagttccaccatcattaatttttttcaagatttttgtgtctttatctctccaaatagaagaaatggaga 32577477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 167
Target Start/End: Complemental strand, 28792497 - 28792436
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagaca 167  Q
    |||| |||||| |||||||||||||   |||  ||||||||||||||||||||| |||||||    
T  28792497 gggttaagatcatctccatttataaccatttctatttgttgcaatttggagagagatagaca 28792436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 20494608 - 20494572
Alignment:
Q  109 tcaagatcctctccatttataaattttttcatttgtt 145  Q
    |||||||||||||||||||||||||| | ||||||||    
T  20494608 tcaagatcctctccatttataaatttctccatttgtt 20494572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 174
Target Start/End: Complemental strand, 31523816 - 31523749
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaa 174  Q
    ||||||| ||||||||||||||||||||| | |||||||| | |||| |||||| | ||||||| ||||    
T  31523816 gggtcaatatcctctccatttataaatttctccatttgtt-ccatttagagagataaagacacataaaa 31523749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 296
Target Start/End: Complemental strand, 35957604 - 35957568
Alignment:
Q  260 aaatggagagggaaataaatggagaagattttgactc 296  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  35957604 aaatggagagggaaataaatggagaggatcttgactc 35957568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 42613007 - 42613074
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaa 174  Q
    ||||||| ||||||||||||||||||||| | |||||||| | |||| |||||| | ||||||| ||||    
T  42613007 gggtcaatatcctctccatttataaatttctccatttgtt-ctatttagagagataaagacacataaaa 42613074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 174
Target Start/End: Complemental strand, 49679418 - 49679351
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaa 174  Q
    ||||||| ||||||||||||||||||||| | |||||||| | |||| |||||| | ||||||| ||||    
T  49679418 gggtcaatatcctctccatttataaatttctccatttgtttc-atttagagagataaagacacataaaa 49679351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 123; Significance: 4e-63; HSPs: 51)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 105 - 254
Target Start/End: Original strand, 47799856 - 47800006
Alignment:
Q  105 tgggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtc 204  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||| |||||||    
T  47799856 tgggtcaagatcctctccatttataaatttttccatttgttgcaatttggagagagatagacacaaaaaataagtgatgggtcctatcactaagtgggtc 47799955  T
Q  205 ccaccatcattaatta-tttttactttttatgtgtctttatctctctaaat 254  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  47799956 ccaccatcattaattattttttactttttatgtgtctttatctctctaaat 47800006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 112 - 268
Target Start/End: Complemental strand, 30588647 - 30588490
Alignment:
Q  112 agatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccat 211  Q
    ||||||||||||||||||||||||| |||||||||||||||||  ||| ||||||||||||||||||||  |||||| ||||||| ||||||||||||||    
T  30588647 agatcctctccatttataaatttttccatttgttgcaatttgggaagagatagacacaaaaaataagtgacgggtcctatcactaagtgggtcccaccat 30588548  T
Q  212 cattaattat-ttttactttttatgtgtctttatctctctaaatggaggaaatggaga 268  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||    
T  30588547 cattaattattttttactttttatgtgtctttatctctctaaatggaacaaatggaga 30588490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 107 - 268
Target Start/End: Original strand, 19888992 - 19889154
Alignment:
Q  107 ggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtccc 206  Q
    |||||| |||||||||||||||||||||||| |||||||||||||| || ||| ||||| ||||||||||||| |||||||| ||||||| |||||| ||    
T  19888992 ggtcaacatcctctccatttataaatttttttatttgttgcaatttagaaagagatagatacaaaaaataagttgtgggtcctatcactaagtgggttcc 19889091  T
Q  207 accatcattaatta-tttttactttttatgtgtctttatctctctaaatggaggaaatggaga 268  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||    
T  19889092 accatcattaattattttttactttttatgtgtctttatctctctaaatggaataaatggaga 19889154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 106 - 257
Target Start/End: Complemental strand, 28528669 - 28528516
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcc 205  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||| |||||||| |||| ||||||| | |  |||    
T  28528669 gggtcaagatcctctccatttataaatttttttatttgttgcaatttggagagagatagacaaaaaaaacaagtggtgagtcctatcactaagcgaatcc 28528570  T
Q  206 caccatcattaattat--ttttactttttatgtgtctttatctctctaaatgga 257  Q
    ||||||||||||||||  ||||||||||||||||||| ||||||||||||||||    
T  28528569 caccatcattaattatttttttactttttatgtgtctctatctctctaaatgga 28528516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 106 - 294
Target Start/End: Complemental strand, 47080547 - 47080350
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaa-aaaataagtggtgggtcccatcactaggtgggtc 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||| ||||||| ||||||| | |||||    
T  47080547 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagagatagacacaaaaaaacaagtgatgggtcctatcactaagcgggtc 47080448  T
Q  205 ccaccatcattaa--------ttatttttactttttatgtgtctttatctctctaaatggaggaaatggagagggaaataaatggagaagattttgac 294  Q
    |||||||||||||        || |||||||||||||||||||| ||||||||||||| ||  |||||||||     ||||||||||||||| |||||    
T  47080447 ccaccatcattaattttttatttttttttactttttatgtgtctctatctctctaaatagaacaaatggagaaatttataaatggagaagatattgac 47080350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 120 - 209
Target Start/End: Complemental strand, 35737217 - 35737128
Alignment:
Q  120 tccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccacc 209  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  35737217 tccatttataaatttttccatttgttgcaatttggagagagatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccacc 35737128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 201 - 296
Target Start/End: Complemental strand, 35736961 - 35736865
Alignment:
Q  201 ggtcccaccatcattaattattttt-actttttatgtgtctttatctctctaaatggaggaaatggagagggaaataaatggagaagattttgactc 296  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  35736961 ggtcccaccatcattaattattttttattttttatgtgtctttatctttctaaatggaggaaatagagagggaaataaatggagaagattttgactc 35736865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 106 - 216
Target Start/End: Original strand, 14696714 - 14696825
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacac-aaaaaataagtggtgggtcccatcactaggtgggtc 204  Q
    |||| |||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||| |||| ||    
T  14696714 gggtaaagatcctctccatttataattttttccatttgttgcaatttggagagagatagacacaaaaaaataagtggtgggtcctatcactaagtggatc 14696813  T
Q  205 ccaccatcatta 216  Q
    ||||||||||||    
T  14696814 ccaccatcatta 14696825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 104 - 216
Target Start/End: Complemental strand, 30102614 - 30102501
Alignment:
Q  104 ttgggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagac-acaaaaaataagtggtgggtcccatcactaggtggg 202  Q
    |||||| |||||||||||||||||||| ||||| |||||||||||||||||||||| |||||| | |||||||||||||||||||| ||||||| ||||     
T  30102614 ttgggtaaagatcctctccatttataactttttccatttgttgcaatttggagagagatagacaaaaaaaaataagtggtgggtcctatcactaagtgga 30102515  T
Q  203 tcccaccatcatta 216  Q
    ||||||||||||||    
T  30102514 tcccaccatcatta 30102501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 106 - 196
Target Start/End: Original strand, 32520286 - 32520377
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacac-aaaaaataagtggtgggtcccatcacta 196  Q
    |||| |||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||    
T  32520286 gggtaaagatcctctccatttataactttttccatttgttgcaatttggagagagatagacacaaaaaaataagtggtgggtcctatcacta 32520377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 106 - 216
Target Start/End: Complemental strand, 4269295 - 4269187
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcc 205  Q
    |||| ||||| |||||||||||||| |||||||||||||||||||||||||||| | | ||| |||||||||||||||||||| ||||||| |||| |||    
T  4269295 gggtaaagattctctccatttataatttttttcatttgttgcaatttggagagaga-acaca-aaaaaataagtggtgggtcctatcactaagtggatcc 4269198  T
Q  206 caccatcatta 216  Q
    |||||||||||    
T  4269197 caccatcatta 4269187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 105 - 216
Target Start/End: Original strand, 19027635 - 19027751
Alignment:
Q  105 tgggtcaagatcctctccatttataa----attttttcatttgttgcaatttggagagaaatagacac-aaaaaataagtggtgggtcccatcactaggt 199  Q
    ||||| ||||||||||||||||||||     ||||| |||||||| ||||||||||||| |||||||| ||||||||| |||||||||| ||||||| ||    
T  19027635 tgggtaaagatcctctccatttataactttctttttccatttgttacaatttggagagagatagacacaaaaaaataaatggtgggtcctatcactaagt 19027734  T
Q  200 gggtcccaccatcatta 216  Q
    || ||||||||||||||    
T  19027735 ggatcccaccatcatta 19027751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 105 - 216
Target Start/End: Complemental strand, 20727001 - 20726885
Alignment:
Q  105 tgggtcaagatcctctccatttataa----attttttcatttgttgcaatttggagagaaatagacac-aaaaaataagtggtgggtcccatcactaggt 199  Q
    ||||| ||||||||||||||||||||     ||||| |||||||| ||||||||||||| |||||||| ||||||||| |||||||||| ||||||| ||    
T  20727001 tgggtaaagatcctctccatttataactttctttttccatttgttacaatttggagagagatagacacaaaaaaataaatggtgggtcctatcactaagt 20726902  T
Q  200 gggtcccaccatcatta 216  Q
    || ||||||||||||||    
T  20726901 ggatcccaccatcatta 20726885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 145 - 297
Target Start/End: Complemental strand, 8149688 - 8149536
Alignment:
Q  145 tgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttactttttatgtgtcttta 243  Q
    ||||||||| ||||| ||||| ||  ||||||||| |||||||  |||| || |||||||||||||||||||||||| |||||| |||| ||||||||||    
T  8149688 tgcaatttgaagagagatagagacgtaaaataagtagtgggtcatatcattaagtgggtcccaccatcattaattattttttacctttt-tgtgtcttta 8149590  T
Q  244 tctctctaaatggaggaaatggagagggaaataaatggagaagattttgactca 297  Q
    |||||| ||||||  ||||| ||||||  ||||||| |||| ||| || |||||    
T  8149589 tctctccaaatggtagaaatagagaggataataaattgagaggatcttaactca 8149536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 111 - 215
Target Start/End: Complemental strand, 31236280 - 31236175
Alignment:
Q  111 aagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagac-acaaaaaataagtggtgggtcccatcactaggtgggtcccacc 209  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||||| |||||| | ||||||| |||| ||| ||| |||| || |||| |||||||    
T  31236280 aagatcctctccatttataatttttttcatgtgttgcaatttggagagagatagacaaaaaaaaattagtgatggatcctatcattatgtggatcccacc 31236181  T
Q  210 atcatt 215  Q
    ||||||    
T  31236180 atcatt 31236175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 32520449 - 32520385
Alignment:
Q  105 tgggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacaca 169  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||    
T  32520449 tgggtcaagatcctctccatttataactttttccatttgttgcaatttggagagagatagacaca 32520385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 4269116 - 4269179
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacaca 169  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||    
T  4269116 gggtcaagatcctctccatttataactttttccatttgttgcaatttggagagagatagacaca 4269179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 30102429 - 30102493
Alignment:
Q  105 tgggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacaca 169  Q
    ||||||||||||||||||||||||||  |||| |||||||||||||||||||||| |||||||||    
T  30102429 tgggtcaagatcctctccatttataaccttttccatttgttgcaatttggagagagatagacaca 30102493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 148 - 294
Target Start/End: Original strand, 47500281 - 47500439
Alignment:
Q  148 aatttggagagaaatagacacaaaa-aataagtggtgggtcccatcactaggtgggtcccaccatcattaattattttt-----------actttttatg 235  Q
    |||||||||||| |||||||||||| ||||  |||||||||| | ||||| |||||||||| |||||||||||||||||           |  |||| ||    
T  47500281 aatttggagagagatagacacaaaagaatagatggtgggtccaaccactaagtgggtcccatcatcattaattattttttatttttttcaaaattttgtg 47500380  T
Q  236 tgtctttatctctctaaatggaggaaatggagagggaaataaatggagaagattttgac 294  Q
    ||||| |||||||||||||||  |||||||||| ||| ||||||||||| |||||||||    
T  47500381 tgtctatatctctctaaatggtagaaatggagaaggacataaatggagaggattttgac 47500439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 151 - 221
Target Start/End: Original strand, 25084730 - 25084800
Alignment:
Q  151 ttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat 221  Q
    ||||||||| ||||||||||||||||  |||||||||| | ||||| ||||||||||||||||||||||||    
T  25084730 ttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 25084800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 144 - 225
Target Start/End: Complemental strand, 33450587 - 33450505
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaa-aataagtggtgggtcccatcactaggtgggtcccaccatcattaattattttt 225  Q
    |||||||||||||||| |||||||||||| ||||  |||||||||| | ||||| |||||||||| |||||||||||||||||    
T  33450587 ttgcaatttggagagagatagacacaaaagaatagatggtgggtccaaccactaagtgggtcccatcatcattaattattttt 33450505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 47226071 - 47226158
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    |||||| ||||||||| ||| ||||||||||||  |||||||||||| |||||  ||||||||||||||||||||||| |||||||||||    
T  47226071 ttgcaagttggagagagataaacacaaaaaata--tggtgggtcccaccactaaatgggtcccaccatcattaattatattttacttttt 47226158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 9559049 - 9559126
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat 221  Q
    |||||| ||||||||| ||||| ||||||||||  |||||||||| | ||||| ||||||||||||||||||||||||    
T  9559049 ttgcaagttggagagagatagatacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 9559126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 14696890 - 14696833
Alignment:
Q  112 agatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacaca 169  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||    
T  14696890 agatcctctccatttataactttttccatttgttgcaatttggagagagatagacaca 14696833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 147 - 296
Target Start/End: Original strand, 48831190 - 48831341
Alignment:
Q  147 caatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaatta----tttttactttttatgtgtcttt 242  Q
    ||||||| ||| | |||||||||||||||| |||||| |||| |||| ||  ||  | | ||||| ||||||||    ||||||||||| |||||  |||    
T  48831190 caatttgaagaaagatagacacaaaaaataggtggtgtgtcctatcattaaatgaattctaccattattaattactattttttacttttcatgtgatttt 48831289  T
Q  243 atctctctaaatggaggaaatggagagggaaataaatggagaagattttgactc 296  Q
    |||| |||||||||||||||||||||  |||||||||||||| ||| |||||||    
T  48831290 atctttctaaatggaggaaatggaga--gaaataaatggagaggatcttgactc 48831341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 106 - 165
Target Start/End: Complemental strand, 19027822 - 19027763
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaataga 165  Q
    ||||||||||||||| ||||||||| ||||| |||||||||||||||||||||| |||||    
T  19027822 gggtcaagatcctcttcatttataactttttccatttgttgcaatttggagagagataga 19027763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 20726814 - 20726873
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaataga 165  Q
    ||||||||||||||| ||||||||| ||||| |||||||||||||||||||||| |||||    
T  20726814 gggtcaagatcctcttcatttataactttttccatttgttgcaatttggagagagataga 20726873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 210 - 270
Target Start/End: Complemental strand, 44389822 - 44389760
Alignment:
Q  210 atcattaattattttt--actttttatgtgtctttatctctctaaatggaggaaatggagagg 270  Q
    ||||||||||||||||  |||||||||| || |||||||||||||||||||||||||||||||    
T  44389822 atcattaattatttttttactttttatgggtttttatctctctaaatggaggaaatggagagg 44389760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 286
Target Start/End: Complemental strand, 7362648 - 7362495
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttact----------tttt 232  Q
    |||||| ||||||||| ||||||||||||||||  |||||||||  | |||||  ||||| ||||||||||||||||| |||||||          ||||    
T  7362648 ttgcaaattggagagagatagacacaaaaaatagatggtgggtcgtaccactaaatgggttccaccatcattaattatattttacttttttcaagatttt 7362549  T
Q  233 atgtgtctttatctctctaaatggaggaaatggagagggaaataaatggagaag 286  Q
    ||||||||||||||||| |||| || ||||||||||   | |||||||||||||    
T  7362548 atgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaag 7362495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 12139407 - 12139317
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggt-gggtcccaccatcattaattat-ttttacttttt 232  Q
    |||||| ||||||||| ||||||||||||||||  |||||||||| | || || || |||||||||||||||||||||| |||||||||||    
T  12139407 ttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccattaagtggggtcccaccatcattaattatattttacttttt 12139317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 144 - 221
Target Start/End: Complemental strand, 4888547 - 4888470
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat 221  Q
    |||||| ||||||||| ||||||||||||||||  | |||||||| | ||||| || |||||||||||||||||||||    
T  4888547 ttgcaagttggagagagatagacacaaaaaatagatagtgggtcctaccactaagtaggtcccaccatcattaattat 4888470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 21151232 - 21151143
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    |||||| ||||||||| |||||||||| |||||  ||| || ||| | ||||| |||||||||||||||||||||||| |||||||||||    
T  21151232 ttgcaagttggagagagatagacacaagaaatagatggaggatcctaccactaagtgggtcccaccatcattaattatattttacttttt 21151143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 145 - 281
Target Start/End: Complemental strand, 32916035 - 32915891
Alignment:
Q  145 tgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattattttt---------actttttatg 235  Q
    ||||||||| ||||| ||||||||||||||||| | |||||||| | || || ||| ||||||||||||| |||||| |||         ||||||| ||    
T  32916035 tgcaatttgaagagagatagacacaaaaaataaatagtgggtcctaccattaagtgagtcccaccatcatgaattatatttttttttaaaacttttt-tg 32915937  T
Q  236 tgtctttatctctctaaatggaggaaatggagagggaaataaatgg 281  Q
    |||||||||||||| ||||||| |||||||||| | | ||||||||    
T  32915936 tgtctttatctctccaaatggaagaaatggagaagaacataaatgg 32915891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 165 - 289
Target Start/End: Complemental strand, 32916228 - 32916103
Alignment:
Q  165 acacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattattttt-actttttatgtgtctttatctctctaaatggaggaaat 263  Q
    |||| ||||||| || |||||||  | ||||| |||| | ||||||||||||||||||||| | ||||| ||||| |||||||||| ||||||| |||||    
T  32916228 acacgaaaaataggttgtgggtcataccactaagtggattccaccatcattaattattttttattttttgtgtgtatttatctctcaaaatggaagaaat 32916129  T
Q  264 ggagagggaaataaatggagaagatt 289  Q
    |||||  |  ||||||||||| ||||    
T  32916128 ggagaaagttataaatggagaggatt 32916103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 144 - 224
Target Start/End: Complemental strand, 989209 - 989129
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattatttt 224  Q
    |||||||||||||||| ||||||||||||||||  | |||||||| | ||||| || ||||| ||||| ||||||||||||    
T  989209 ttgcaatttggagagagatagacacaaaaaatatatagtgggtcctaccactaagtaggtccaaccataattaattatttt 989129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 16366598 - 16366509
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    |||||| ||||||||| ||||||| || |||||  |||||| ||| | ||||| ||| |||||||||||||||||||| |||||||||||    
T  16366598 ttgcaagttggagagagatagacataagaaatagatggtggatcctaccactaagtgtgtcccaccatcattaattatattttacttttt 16366509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 221
Target Start/End: Complemental strand, 18198336 - 18198259
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat 221  Q
    |||||| ||||||| ||||||||||||||||||  |||||||| |   ||||| ||| ||||||||||||||||||||    
T  18198336 ttgcaaattggagataaatagacacaaaaaatagatggtgggttctgccactaagtgagtcccaccatcattaattat 18198259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 254
Target Start/End: Complemental strand, 41220329 - 41220272
Alignment:
Q  198 gtgggtcccaccatcattaattatttttacttttta-tgtgtctttatctctctaaat 254  Q
    |||||||||||||||||| ||||||||||  ||||| |||||||||||||||||||||    
T  41220329 gtgggtcccaccatcattgattatttttaaattttattgtgtctttatctctctaaat 41220272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 45260422 - 45260511
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    |||||| ||||||||| ||||||||||||||||  | |||| ||| | ||||| |||| ||||| ||||||||||||| |||||||||||    
T  45260422 ttgcaagttggagagagatagacacaaaaaatagattgtggatcctaccactaagtggatcccatcatcattaattatattttacttttt 45260511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 268
Target Start/End: Original strand, 6882129 - 6882188
Alignment:
Q  210 atcattaattatttt-tactttttatgtgtctttatctctctaaatggaggaaatggaga 268  Q
    ||||||||||||||| ||||||||||||||||||||||||  |||||||  |||||||||    
T  6882129 atcattaattattttatactttttatgtgtctttatctcttcaaatggaacaaatggaga 6882188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 225
Target Start/End: Original strand, 34985940 - 34986022
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaa-aataagtggtgggtcccatcactaggtgggtcccaccatcattaattattttt 225  Q
    |||||||||||||||| |||||||||||| ||||  |||||||||  | |||||  || |||||| |||||||||||||||||    
T  34985940 ttgcaatttggagagagatagacacaaaagaatagatggtgggtcaaaccactaaatgagtcccatcatcattaattattttt 34986022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 270
Target Start/End: Original strand, 48205682 - 48205755
Alignment:
Q  197 ggtgggtcccaccatcattaattatttttactttttatgtgtctttatctctctaaatgga-ggaaatggagagg 270  Q
    ||||||| | |||||  |||||||||||| |||||||||||||||||||| ||||| |||| |||||||||||||    
T  48205682 ggtgggttcaaccattcttaattattttt-ctttttatgtgtctttatctttctaactggagggaaatggagagg 48205755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 33057268 - 33057207
Alignment:
Q  114 atcctctccatttataaatttttt-catttgttgcaatttggagagaaatagacacaaaaaa 174  Q
    ||||||||||||||||| |||||| | ||||||| |||||||||||| ||||||||| ||||    
T  33057268 atcctctccatttataattttttttcgtttgttgtaatttggagagagatagacacacaaaa 33057207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 39855812 - 39855897
Alignment:
Q  148 aatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaatt-atttttacttttt 232  Q
    |||||||||||| ||||||||| |||| |  |||| ||||| | ||||| |||||||||| ||||||||||| | |||||||||||    
T  39855812 aatttggagagagatagacacataaaaaagatggtcggtcctaccactaagtgggtcccatcatcattaattaaattttacttttt 39855897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 221
Target Start/End: Complemental strand, 44648044 - 44647965
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtggg--tcccaccatcattaattat 221  Q
    |||||| ||||||||| ||||||||||||||||  |||||| ||| | ||||| |||||  |||| ||||||||||||||    
T  44648044 ttgcaagttggagagagatagacacaaaaaatagatggtggatccgaccactaagtgggtctccctccatcattaattat 44647965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 46802331 - 46802406
Alignment:
Q  149 atttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattatttt 224  Q
    |||| |||||| ||||||| ||||||||   ||||||||| | ||||| ||||||||||||| | |||||||||||    
T  46802331 atttagagagagatagacataaaaaatagacggtgggtcctaccactaagtgggtcccaccaccgttaattatttt 46802406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 244
Target Start/End: Original strand, 11828958 - 11829004
Alignment:
Q  198 gtgggtcccaccatcattaattatttttactttttatgtgtctttat 244  Q
    |||||| |||||||||||||||||||||  |||||||||||| ||||    
T  11828958 gtgggttccaccatcattaattattttttatttttatgtgtccttat 11829004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 29631126 - 29631039
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattatt-tttacttttt 232  Q
    |||||||||| |||||  ||||||||||| |||  | |||||||| | ||||| || |||||||| ||||||||||||| ||||||||||    
T  29631126 ttgcaatttgaagaga--tagacacaaaacatagatagtgggtccaaccactatgtaggtcccactatcattaattattctttacttttt 29631039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 8256408 - 8256440
Alignment:
Q  110 caagatcctctccatttataaattttttcattt 142  Q
    ||||||||||||||||||||||||||| |||||    
T  8256408 caagatcctctccatttataaatttttccattt 8256440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #50
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 268
Target Start/End: Complemental strand, 41271849 - 41271817
Alignment:
Q  236 tgtctttatctctctaaatggaggaaatggaga 268  Q
    |||||||||||||||||||||| ||||||||||    
T  41271849 tgtctttatctctctaaatggaagaaatggaga 41271817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #51
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 174
Target Start/End: Complemental strand, 47800048 - 47799981
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaa 174  Q
    ||||||| ||| ||||||||||||||||||| |||||||| | |||| |||||| | ||||||| ||||    
T  47800048 gggtcaatatcatctccatttataaatttttccatttgtt-ctatttagagagataaagacacataaaa 47799981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 4e-63; HSPs: 39)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 105 - 294
Target Start/End: Complemental strand, 375112 - 374922
Alignment:
Q  105 tgggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtc 204  Q
    ||||| |||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||| || |||| |||||||    
T  375112 tgggttaagatcctctccatttataaatttctccatttgttgcaatttggagagagatagacacaaaaaataagtggtgggtcctattactaagtgggtc 375013  T
Q  205 ccaccatcattaattat-ttttactttttatgtgtctttatctctctaaatggaggaaatggagagggaaataaatggagaagattttgac 294  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||     ||||||||||||||| |||||    
T  375012 ccaccatcattaattattttttactttttatgtgtctttatctctctaaatggaacaaatggagaaatttataaatggagaagatattgac 374922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 106 - 268
Target Start/End: Original strand, 23459803 - 23459966
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcc 205  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||  |||||||    
T  23459803 gggtcaagatcctctccatttataaatttttccatttgttgcaatttggagagagatagacacaaaaaataagtggcgggtcctatcactaaatgggtcc 23459902  T
Q  206 caccatcattaatta-tttttactttttatgtgtctttatctctctaaatggaggaaatggaga 268  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||  |||||||||    
T  23459903 caccatcattaattattttttactttttatgtgtctttatctctctgaatggaacaaatggaga 23459966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 113 - 268
Target Start/End: Complemental strand, 8988966 - 8988811
Alignment:
Q  113 gatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatc 212  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| | ||||| ||||||| |||||||||||||||    
T  8988966 gatcctctccatttataaatttttttatttgttgcaatttggagagagatagacacaaaaaataagtgataggtcctatcactaagtgggtcccaccatc 8988867  T
Q  213 attaattatttttactttttatgtgtctttatctctctaaatggaggaaatggaga 268  Q
    |||||||||||||  ||||||||||||||||||||||||||||||  |||||||||    
T  8988866 attaattattttttatttttatgtgtctttatctctctaaatggaacaaatggaga 8988811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 106 - 268
Target Start/End: Complemental strand, 29188772 - 29188608
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaa-aaaataagtggtgggtcccatcactaggtgggtc 204  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||| |||||||| |||| ||||||| | |||||    
T  29188772 gggtcaagatcctctccatttataaatttttccatttgttgcaatttggagagagatagacacaaaaaaacaagtggtgcgtcctatcactaagcgggtc 29188673  T
Q  205 ccaccatcattaatta-tttttactttttatgtgtctttatctctctaaatggaggaaatggaga 268  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||    
T  29188672 ccaccatcattaattattttttactttttatgtgtctttatctctctaaatggaacaaatggaga 29188608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 106 - 268
Target Start/End: Original strand, 3354737 - 3354883
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcc 205  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||                 |||||||||    
T  3354737 gggtcaagatcctctccatttataaatttttccatttgttgtaatttggagagagatagacacaaaaaataagt-----------------ggtgggtcc 3354819  T
Q  206 caccatcattaatta-tttttactttttatgtgtctttatctctctaaatggaggaaatggaga 268  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| ||  |||||||||    
T  3354820 caccatcattaattattttttactttttatgtgtctttatctctctaaatagaacaaatggaga 3354883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 106 - 216
Target Start/End: Complemental strand, 13780617 - 13780506
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaa-aaaataagtggtgggtcccatcactaggtgggtc 204  Q
    |||| ||||||||||||||||||||  |||| |||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||| |||| ||    
T  13780617 gggtaaagatcctctccatttataacattttccatttgttgcaatttggagagagatagacacaaaaaaataagtggtgggtcctatcactaagtggatc 13780518  T
Q  205 ccaccatcatta 216  Q
    ||||||||||||    
T  13780517 ccaccatcatta 13780506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 111 - 216
Target Start/End: Original strand, 40254111 - 40254217
Alignment:
Q  111 aagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaa-aataagtggtgggtcccatcactaggtgggtcccacc 209  Q
    |||||||||||||||||||| ||||| ||||||||||||||||| |||| |||||||||||| |||||||||||||||| ||||||| |||| |||||||    
T  40254111 aagatcctctccatttataactttttccatttgttgcaatttggggagagatagacacaaaataataagtggtgggtcctatcactaagtggatcccacc 40254210  T
Q  210 atcatta 216  Q
    |||||||    
T  40254211 atcatta 40254217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 143 - 266
Target Start/End: Original strand, 36758855 - 36758979
Alignment:
Q  143 gttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaatta-tttttactttttatgtgtctt 241  Q
    ||||||||||||||||| ||||||||||||| |||||||||| ||| |||  ||||||||| |||| ||||||||||| |||||||||||| ||||||||    
T  36758855 gttgcaatttggagagagatagacacaaaaagtaagtggtggatcctatctttaggtgggttccacaatcattaattattttttactttttgtgtgtctt 36758954  T
Q  242 tatctctctaaatggaggaaatgga 266  Q
    ||||| ||||||||||  |||||||    
T  36758955 tatctttctaaatggaacaaatgga 36758979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 105 - 216
Target Start/End: Original strand, 41435159 - 41435271
Alignment:
Q  105 tgggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacac-aaaaaataagtggtgggtcccatcactaggtgggt 203  Q
    ||||| |||||||||||||||||||| |||||| ||||||| ||||||||||||| |||||||| |||||||||||||||| ||| ||||||| |||| |    
T  41435159 tgggtaaagatcctctccatttataactttttttatttgttacaatttggagagagatagacacaaaaaaataagtggtggatcctatcactaagtggat 41435258  T
Q  204 cccaccatcatta 216  Q
    |||||||| ||||    
T  41435259 cccaccattatta 41435271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 106 - 216
Target Start/End: Complemental strand, 3594976 - 3594865
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagac-acaaaaaataagtggtgggtcccatcactaggtgggtc 204  Q
    |||| |||||||||||||||||||| ||||| ||||| |||||||||||||||| |||||| | |||||||||||||||| ||| ||||||| |||| ||    
T  3594976 gggtaaagatcctctccatttataactttttccatttattgcaatttggagagagatagacaaaaaaaaataagtggtggatcctatcactaagtggatc 3594877  T
Q  205 ccaccatcatta 216  Q
    ||||||||||||    
T  3594876 ccaccatcatta 3594865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 3594794 - 3594857
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacaca 169  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  3594794 gggtcaagatcctctccatttataacttttttcatttgttgcaatttggagagagatagacaca 3594857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 106 - 193
Target Start/End: Original strand, 23464303 - 23464389
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatca 193  Q
    |||| |||||||||| ||||||||||||| ||||||||||| |||||||||||| || |||||||||||||||| |||||||||||||    
T  23464303 gggtgaagatcctcttcatttataaatttattcatttgttgtaatttggagagagat-gacacaaaaaataagttgtgggtcccatca 23464389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 145 - 262
Target Start/End: Complemental strand, 35315581 - 35315463
Alignment:
Q  145 tgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattattttt-actttttatgtgtcttta 243  Q
    ||||||||||||||| ||| ||||||| |||| ||||||||||| |||| || ||| ||||  ||||| |||| ||||||| ||||||||||||| ||||    
T  35315581 tgcaatttggagagagataaacacaaacaataggtggtgggtcctatcattaagtgagtccttccatcgttaactattttttactttttatgtgttttta 35315482  T
Q  244 tctctctaaatggaggaaa 262  Q
     ||||||||||||||||||    
T  35315481 cctctctaaatggaggaaa 35315463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 41435351 - 41435279
Alignment:
Q  97 atttaacttgggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacaca 169  Q
    |||| |||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||| |||||||||    
T  41435351 attttacttgggtcaagattctctccatttataactttttccatttgttgcaatttggagagagatagacaca 41435279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 106 - 216
Target Start/End: Complemental strand, 6288163 - 6288050
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagac---acaaaaaataagtggtgggtcccatcactaggtggg 202  Q
    |||| |||||||||||||||||||| || ||  ||||||||||||||||||||| ||||||   | |||||||||||  ||||||| ||||||| ||||     
T  6288163 gggtaaagatcctctccatttataacttcttctatttgttgcaatttggagagagatagacaaaaaaaaaaataagttatgggtcctatcactaagtgga 6288064  T
Q  203 tcccaccatcatta 216  Q
    ||||||||||||||    
T  6288063 tcccaccatcatta 6288050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 35316905 - 35316816
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    |||||| ||||||||| ||||||||||||||||  |||||| ||| | ||||| |||||||||||||||||||||||| |||||||||||    
T  35316905 ttgcaagttggagagagatagacacaaaaaatagatggtggatcctaccactaagtgggtcccaccatcattaattatattttacttttt 35316816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 40254285 - 40254225
Alignment:
Q  109 tcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacaca 169  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||    
T  40254285 tcaagatcctcttcatttataacttttttcatttgttgcaatttggagagagatagacaca 40254225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 42380312 - 42380248
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaa 170  Q
    |||| |||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||    
T  42380312 gggttaagatcctctccatttataactttttccatttgttgcaatttggagagagatagacacaa 42380248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 213 - 296
Target Start/End: Original strand, 2805285 - 2805368
Alignment:
Q  213 attaattatttttactttttatgtgtctttatctctctaaatggaggaaatggagagggaaataaatggagaagattttgactc 296  Q
    |||||||||||||| ||| | ||||||||||| ||| |||||||| |||||||||||   ||||||||||||||||||||||||    
T  2805285 attaattatttttaatttctttgtgtctttatttctttaaatggaagaaatggagagactaataaatggagaagattttgactc 2805368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 155 - 232
Target Start/End: Complemental strand, 28564961 - 28564883
Alignment:
Q  155 agagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    ||||| ||||||||||||||||  |||||||||| | ||||| |||||||||||||||||||||||| |||||||||||    
T  28564961 agagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatattttacttttt 28564883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 144 - 221
Target Start/End: Complemental strand, 13238761 - 13238684
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat 221  Q
    |||||| ||||||||| ||||||||||||||||  |||||||||| | ||| | ||||||||||||||||||||||||    
T  13238761 ttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccaccaagtgggtcccaccatcattaattat 13238684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 23259482 - 23259571
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    |||||| ||||||||| ||||||||||||||||  |||||||||| |  |||| |||| ||||||||||||||||||| |||||||||||    
T  23259482 ttgcaagttggagagagatagacacaaaaaatagctggtgggtcctactactaagtggatcccaccatcattaattatattttacttttt 23259571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 6287979 - 6288042
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacaca 169  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||| |||||| ||| |||||    
T  6287979 gggtcaagatcctctccatttataacttttttcattggttgcaatttagagagagataaacaca 6288042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 13780435 - 13780498
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacaca 169  Q
    |||||||||||||||||||||||||  |||| || ||||||||||||||||||| |||||||||    
T  13780435 gggtcaagatcctctccatttataaccttttccacttgttgcaatttggagagagatagacaca 13780498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 169 - 245
Target Start/End: Complemental strand, 30840935 - 30840859
Alignment:
Q  169 aaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaatta-tttttactttttatgtgtctttatc 245  Q
    |||||||||||||||||||| ||||||| ||| ||| |||||| |||||||| |||||||||||| ||||||||||||    
T  30840935 aaaaaataagtggtgggtcctatcactaagtgagtctcaccat-attaattattttttactttttgtgtgtctttatc 30840859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 8008795 - 8008735
Alignment:
Q  114 atcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaa 174  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||| ||| ||| ||||||    
T  8008795 atcctcttcatttataacttttttcatttgttgcaatttggagagagataaacaaaaaaaa 8008735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 161 - 268
Target Start/End: Original strand, 373176 - 373284
Alignment:
Q  161 atagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattattttt-actttttatgtgtctttatctctctaaatggagg 259  Q
    |||||||||||||||| ||||||||||  || | ||  ||  ||||||||| ||||||||||||| |  |||| ||| ||||||||| |||||||||| |    
T  373176 atagacacaaaaaataggtggtgggtcatattattaaatgaatcccaccattattaattatttttaagattttttgtatctttatctttctaaatggaag 373275  T
Q  260 aaatggaga 268  Q
    |||||||||    
T  373276 aaatggaga 373284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 161 - 268
Target Start/End: Original strand, 41072961 - 41073069
Alignment:
Q  161 atagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattatttttact-ttttatgtgtctttatctctctaaatggagg 259  Q
    ||||||| | ||||||  |||||||||| |||| ||  ||| || ||| |||||||||||||||||   |||| |||||||||||||||||||||| | |    
T  41072961 atagacatataaaatagttggtgggtcctatcattaaatggatctcacaatcattaattatttttaagattttttgtgtctttatctctctaaatgaaag 41073060  T
Q  260 aaatggaga 268  Q
    |||||||||    
T  41073061 aaatggaga 41073069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 254
Target Start/End: Complemental strand, 36929795 - 36929684
Alignment:
Q  145 tgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaatta-tttttac-tttttatgtgtcttt 242  Q
    ||||||||||||||| ||||||||| |||||| || ||| |||| | || ||  ||| | || ||||||||||||| ||||||| ||||| |||||||||    
T  36929795 tgcaatttggagagagatagacacataaaataggtagtgtgtcctaccattaaatggattccgccatcattaattactttttacttttttgtgtgtcttt 36929696  T
Q  243 atctctctaaat 254  Q
    ||||||| ||||    
T  36929695 atctctccaaat 36929684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 225
Target Start/End: Complemental strand, 30709187 - 30709109
Alignment:
Q  147 caatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattattttt 225  Q
    ||||||||||||| ||||||||| ||||||  |  ||||||| | ||||| |||| ||||||||||||||||| |||||    
T  30709187 caatttggagagagatagacacataaaatagatattgggtcctaccactaagtggatcccaccatcattaattgttttt 30709109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 290
Target Start/End: Original strand, 39329896 - 39329986
Alignment:
Q  201 ggtcccaccatcattaattattttta--ctttttatgtgtctttatctctctaaatggaggaaatggagagggaaataaatggagaagattt 290  Q
    |||||||||| ||||||||||||| |  ||| || |||||||||||||||| ||||||| ||||| ||||    ||||||||||||||||||    
T  39329896 ggtcccaccaccattaattattttcaaacttctt-tgtgtctttatctctccaaatggatgaaatagagacactaataaatggagaagattt 39329986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 218
Target Start/End: Complemental strand, 2063434 - 2063359
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtgg-tgggtcccatcactaggtgggtcccaccatcattaat 218  Q
    |||||||||||||||| ||||||||||||||||  ||| | ||||| | ||| | |||||| ||||||||||||||    
T  2063434 ttgcaatttggagagagatagacacaaaaaatagatggtttggtcctaccaccaagtgggttccaccatcattaat 2063359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 43628692 - 43628754
Alignment:
Q  114 atcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaataa 177  Q
    ||||||||||||||||| |||||| |||| ||  |||||| ||||||||||||| |||||||||    
T  43628692 atcctctccatttataactttttt-atttattataatttgaagagaaatagacaaaaaaaataa 43628754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 136
Target Start/End: Complemental strand, 36402419 - 36402389
Alignment:
Q  106 gggtcaagatcctctccatttataaattttt 136  Q
    |||||||||||||||||||||||||||||||    
T  36402419 gggtcaagatcctctccatttataaattttt 36402389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 23464392 - 23464437
Alignment:
Q  213 attaattatttt-tactttttatgtgtctttatctctctaaatgga 257  Q
    |||||||||||| |||||||||||||||||||| ||| ||||||||    
T  23464392 attaattattttttactttttatgtgtctttatttctttaaatgga 23464437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 268
Target Start/End: Complemental strand, 30824180 - 30824123
Alignment:
Q  212 cattaattatttttact-ttttatgtgtctttatctctctaaatggaggaaatggaga 268  Q
    |||||||||||||||   |||| ||||||| |||||||||||||||| ||||||||||    
T  30824180 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggaga 30824123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 270
Target Start/End: Original strand, 45446651 - 45446724
Alignment:
Q  198 gtgggtcccaccatcattaattatttttactttttat-gtgtctttatctctctaaatggaggaaatggagagg 270  Q
    |||||||||||| |||||||||| ||| |  |||||| ||||||||||||||| ||||||  | ||||||||||    
T  45446651 gtgggtcccaccgtcattaattagtttcaaattttattgtgtctttatctctccaaatggtaggaatggagagg 45446724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 8988783 - 8988850
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaa 174  Q
    ||||||| ||||||||||||||||||||| | |||||||| | |||| |||||| | ||||||| ||||    
T  8988783 gggtcaatatcctctccatttataaatttctccatttgtt-ccatttagagagataaagacacataaaa 8988850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 232
Target Start/End: Complemental strand, 39465802 - 39465766
Alignment:
Q  197 ggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    ||||||||||||||||||||||||| |||||||||||    
T  39465802 ggtgggtcccaccatcattaattatattttacttttt 39465766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 106 - 258
Target Start/End: Original strand, 52279996 - 52280149
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcc 205  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||| |||| |||    
T  52279996 gggttaagatcctctccatttataaattttttcatttgttgcaatttggagagagatagacataaaaaataagtggtgggtcctatcactaagtggatcc 52280095  T
Q  206 caccatcattaatta-tttttactttttatgtgtctttatctctctaaatggag 258  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  52280096 caccatcattaattattttttactttttatgtgtctttatctctctaaatggag 52280149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 106 - 257
Target Start/End: Original strand, 30077601 - 30077753
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcc 205  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| | ||||||| ||| ||||    
T  30077601 gggtcaagatcctctccatttataaattttttcatttattgcaatttggagagagatagacacaaaaaataagtggtgggttctatcactaagtgagtcc 30077700  T
Q  206 caccatcattaatta-tttttactttttatgtgtctttatctctctaaatgga 257  Q
    ||| ||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  30077701 cactatcattaattattttttactttttatgtgtctttatttctctaaatgga 30077753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 100 - 216
Target Start/End: Original strand, 6948781 - 6948899
Alignment:
Q  100 taacttgggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaa--ataagtggtgggtcccatcactag 197  Q
    |||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||  ||||||||||||||| |||||||     
T  6948781 taacctgggtaaagatcctctccatttataatttttttcatttgttgcaatttggagagagatagacaaaaaaaatataagtggtgggtcctatcactaa 6948880  T
Q  198 gtgggtcccaccatcatta 216  Q
    |||| ||||||||||||||    
T  6948881 gtggatcccaccatcatta 6948899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 106 - 216
Target Start/End: Original strand, 18107278 - 18107389
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacac-aaaaaataagtggtgggtcccatcactaggtgggtc 204  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||  ||| ||    
T  18107278 gggtaaagatcctctccatttataacttttttcatttgttgcaatttggagagagatagacacaaaaaaataagtggtgggtcctatcactaaatggatc 18107377  T
Q  205 ccaccatcatta 216  Q
    ||||||||||||    
T  18107378 ccaccatcatta 18107389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 36004941 - 36004878
Alignment:
Q  111 aagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaa 174  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||    
T  36004941 aagatcctctccatttataacttttttcatttgttgcaatttggagagagatagacaaaaaaaa 36004878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 143 - 268
Target Start/End: Complemental strand, 46045768 - 46045642
Alignment:
Q  143 gttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattattttt-actttttatgtgtctt 241  Q
    ||||||| ||||||||| ||  ||| |||||||||||| || |||| ||||||| |||  ||||||||||||||||||||||| ||||||| ||||  ||    
T  46045768 gttgcaacttggagagagatgaacaaaaaaaataagtgatgagtcctatcactaagtgtatcccaccatcattaattatttttcactttttgtgtgattt 46045669  T
Q  242 tatctctctaaatggaggaaatggaga 268  Q
    ||||| |||||||| |  |||||||||    
T  46045668 tatctttctaaatgaaacaaatggaga 46045642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 50484466 - 50484377
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    |||||| ||||||||| ||||||||||||||||  |||||||| | | ||||| |||||||||||| ||||||||||| |||||||||||    
T  50484466 ttgcaagttggagagagatagacacaaaaaatagatggtgggtacaaccactaagtgggtcccaccgtcattaattatattttacttttt 50484377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 18107457 - 18107397
Alignment:
Q  109 tcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacaca 169  Q
    |||||||||||||||||||||| ||||| |||||||| ||||||||||||| |||||||||    
T  18107457 tcaagatcctctccatttataactttttccatttgttacaatttggagagagatagacaca 18107397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 232
Target Start/End: Complemental strand, 12151840 - 12151758
Alignment:
Q  151 ttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    ||||||||| | ||||||||||||||  | |||||||| | ||||| |||||||||||||||||||||||| |||||||||||    
T  12151840 ttggagagagaaagacacaaaaaatagattgtgggtcctaccactaagtgggtcccaccatcattaattatattttacttttt 12151758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 50294058 - 50294135
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat 221  Q
    |||||| ||||||||| ||||||||||||||||  |||||||||| | ||||| |||| ||| |||||||||||||||    
T  50294058 ttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtggatcctaccatcattaattat 50294135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 6948967 - 6948907
Alignment:
Q  109 tcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacaca 169  Q
    ||||||| ||||| |||||||| |||||||||||||||||||||| ||||| |||||||||    
T  6948967 tcaagattctctctatttataacttttttcatttgttgcaatttgaagagagatagacaca 6948907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 144 - 294
Target Start/End: Original strand, 18976299 - 18976458
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaa-aataagtggtgggtcccatcactaggtgggtcccaccatcattaattatttttacttt--------ttat 234  Q
    |||||||||||||||| |||||||||||| ||||  |||||| ||| | || || || ||||||| |||||||||||||||||| |||        || |    
T  18976299 ttgcaatttggagagagatagacacaaaagaatagatggtggatccaaccattaagtaggtcccatcatcattaattatttttatttttttcaaaatttt 18976398  T
Q  235 gtgtctttatctctctaaatggaggaaatggagagggaaataaatggagaagattttgac 294  Q
    |||| | |||||||| ||||||  |||||| ||| ||| ||||||||||| |||||||||    
T  18976399 gtgtttatatctctccaaatggtagaaatgaagaaggacataaatggagaggattttgac 18976458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 161 - 270
Target Start/End: Original strand, 24413294 - 24413404
Alignment:
Q  161 atagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattatttt-tactttttatgtgtctttatctctctaaatggagg 259  Q
    |||||||||||||||   |||||||||| |||| ||  ||||||||||||||||||||||||||  |  |||| |||||| ||||| ||| ||||||| |    
T  24413294 atagacacaaaaaatggatggtgggtcctatcattaaatgggtcccaccatcattaattattttcaagattttttgtgtccttatccctcaaaatggaag 24413393  T
Q  260 aaatggagagg 270  Q
    |||| ||||||    
T  24413394 aaattgagagg 24413404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 147 - 225
Target Start/End: Complemental strand, 39426287 - 39426209
Alignment:
Q  147 caatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattattttt 225  Q
    ||||||||||||| ||||||||| ||||||  | |||||||| | |||||  |||||||||| ||||||||||||||||    
T  39426287 caatttggagagagatagacacataaaatagatagtgggtcctaccactaattgggtcccactatcattaattattttt 39426209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 248
Target Start/End: Complemental strand, 26768947 - 26768870
Alignment:
Q  172 aaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttactttttatgtgtctttatctct 248  Q
    ||||||||||||||| | |||| || ||| ||| |||||||||||||||| ||||||||||| |||||||||| ||||    
T  26768947 aaataagtggtgggttctatcattaagtgagtctcaccatcattaattattttttactttttgtgtgtctttaactct 26768870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 257
Target Start/End: Complemental strand, 33441610 - 33441498
Alignment:
Q  147 caatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaatta--tttttactttttatgtgtctttat 244  Q
    |||||| |||||| |||||||||||||||||||||||| ||  |||  ||  || |||| | ||||||||||||  |||||| ||||| ||||| |||||    
T  33441610 caatttagagagagatagacacaaaaaataagtggtggatcatatctttaattgagtcctatcatcattaattatttttttattttttgtgtgtttttat 33441511  T
Q  245 ctctctaaatgga 257  Q
     ||||||||||||    
T  33441510 atctctaaatgga 33441498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 13615298 - 13615366
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaa 174  Q
    |||| |||||||||| ||||||||| ||||| ||||||||||||||| |||| | ||||||||| ||||    
T  13615298 gggtaaagatcctctacatttataactttttccatttgttgcaattttgagaaagatagacacataaaa 13615366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 20507664 - 20507601
Alignment:
Q  111 aagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaa 174  Q
    |||||||||| ||| ||||| ||||| ||||||||| |||||||||||| ||||||||| ||||    
T  20507664 aagatcctctacatatataactttttccatttgttgtaatttggagagagatagacacataaaa 20507601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 259
Target Start/End: Complemental strand, 40805929 - 40805874
Alignment:
Q  205 ccaccatcattaattattttt-actttttatgtgtctttatctctctaaatggagg 259  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||  |||||||||    
T  40805929 ccaccatcattaattatttttcactttttgtgtgtctttatctcttcaaatggagg 40805874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 12380924 - 12380994
Alignment:
Q  163 agacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    ||||||||||||||  |||||||| | | ||||| ||| |||||||||||||||||||| |||||||||||    
T  12380924 agacacaaaaaatagatggtgggttctaccactaagtgagtcccaccatcattaattatattttacttttt 12380994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 12384991 - 12385061
Alignment:
Q  163 agacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    ||||||||||||||  |||||||| | | ||||| ||| |||||||||||||||||||| |||||||||||    
T  12384991 agacacaaaaaatagatggtgggttctaccactaagtgagtcccaccatcattaattatattttacttttt 12385061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 26860049 - 26860135
Alignment:
Q  148 aatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaatta-tttttacttttta 233  Q
    |||||| ||||| ||||||||| ||||||  | || ||||| ||||||| |||| |||||| ||||||||||| |||||||||||||    
T  26860049 aatttgaagagagatagacacataaaatagatagtaggtcctatcactaagtggatcccacaatcattaattattttttacttttta 26860135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 40328355 - 40328269
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    |||||| |||||||||  |||||||||||| ||  |||||||||||| ||||| |||||| |||||||||||| |||| |||||||||||    
T  40328355 ttgcaaattggagaga--tagacacaaaaa-tagatggtgggtcccaccactaagtgggttccaccatcattagttatattttacttttt 40328269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 48327149 - 48327225
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat 221  Q
    |||||| ||||||||| ||||||| ||||||||  ||||| |||| | ||||| |||||||| |||||||||||||||    
T  48327149 ttgcaagttggagagagatagacaaaaaaaatagatggtgagtcctaccactaagtgggtcc-accatcattaattat 48327225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 297
Target Start/End: Original strand, 5047471 - 5047539
Alignment:
Q  229 ttttatgtgtctttatctctctaaatggaggaaatggagagggaaataaatggagaagattttgactca 297  Q
    |||| |||| ||||||||||||||||||| ||||||||||  | |||||||||||| ||| || |||||    
T  5047471 ttttttgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactca 5047539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 221
Target Start/End: Complemental strand, 24977317 - 24977243
Alignment:
Q  147 caatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat 221  Q
    |||||| |||||| ||||||||||||||||  |||||| ||| | ||||| |||||| |||| ||||||| ||||    
T  24977317 caatttagagagagatagacacaaaaaatagatggtggatcctaccactaagtgggttccacaatcattagttat 24977243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 268
Target Start/End: Original strand, 42720849 - 42720887
Alignment:
Q  230 tttatgtgtctttatctctctaaatggaggaaatggaga 268  Q
    |||||||||||||||||||||||||| | ||||||||||    
T  42720849 tttatgtgtctttatctctctaaatgaaagaaatggaga 42720887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 263
Target Start/End: Original strand, 680067 - 680135
Alignment:
Q  197 ggtgggtcccaccatcattaattatttt--tactttttatgtgtctttatctctctaaatggaggaaat 263  Q
    |||||||| ||  |||||||||||||||  |||||||| |||||||||||||||| |||| ||| ||||    
T  680067 ggtgggtctcattatcattaattatttttttactttttgtgtgtctttatctctccaaatagagtaaat 680135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 40808534 - 40808493
Alignment:
Q  145 tgcaatttggagagaaatagacacaaaaaataagtggtgggt 186  Q
    ||||||||||| ||| |||||||||||||||| |||||||||    
T  40808534 tgcaatttggaaagagatagacacaaaaaatatgtggtgggt 40808493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 226
Target Start/End: Complemental strand, 3885757 - 3885729
Alignment:
Q  198 gtgggtcccaccatcattaattattttta 226  Q
    |||||||||||||||||||||||||||||    
T  3885757 gtgggtcccaccatcattaattattttta 3885729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 5047424 - 5047456
Alignment:
Q  192 cactaggtgggtcccaccatcattaattatttt 224  Q
    ||||| |||||||||||||||||||||||||||    
T  5047424 cactatgtgggtcccaccatcattaattatttt 5047456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 23916118 - 23916086
Alignment:
Q  192 cactaggtgggtcccaccatcattaattatttt 224  Q
    ||||| |||||||||||||||||||||||||||    
T  23916118 cactacgtgggtcccaccatcattaattatttt 23916086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 27982131 - 27982083
Alignment:
Q  145 tgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatca 193  Q
    ||||||||||||||| ||||||| ||||||||  || ||||||||||||    
T  27982131 tgcaatttggagagatatagacataaaaaatatatgttgggtcccatca 27982083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 46608409 - 46608453
Alignment:
Q  181 gtgggtcccatcactaggtgggtcccaccatcattaattattttt 225  Q
    |||||||| | ||||| ||||| ||||||||||||||||||||||    
T  46608409 gtgggtcctaccactaagtgggacccaccatcattaattattttt 46608453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 116; Significance: 6e-59; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 106 - 257
Target Start/End: Original strand, 17261 - 17415
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaa--tagacacaaaaaataagtggtgggtcccatcactaggtgggt 203  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |  ||||||||||||||||||| ||||||| ||||||| ||||||    
T  17261 gggtcaagatcctctccatttataaatttcttcatttgttgcaatttggagagagagatagacacaaaaaataagtgctgggtcctatcactaagtgggt 17360  T
Q  204 cccaccatcattaatta-tttttactttttatgtgtctttatctctctaaatgga 257  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17361 cccaccatcattaattattttttactttttatgtgtctttatctctctaaatgga 17415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 174
Target Start/End: Complemental strand, 17454 - 17387
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaa 174  Q
    ||||||| ||||||||||||||||||||| |||||||||| | |||| |||||| | ||||||| ||||    
T  17454 gggtcaatatcctctccatttataaatttcttcatttgtt-ccatttagagagataaagacacataaaa 17387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0664 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 106 - 216
Target Start/End: Original strand, 4657 - 4768
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacac-aaaaaataagtggtgggtcccatcactaggtgggtc 204  Q
    |||| |||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||| |||| ||    
T  4657 gggtaaagatcctctccatttataactttttccatttgttgcaatttggagagagatagacacaaaaaaataagtggtgggtcctatcactaagtggatc 4756  T
Q  205 ccaccatcatta 216  Q
    ||||||||||||    
T  4757 ccaccatcatta 4768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0664; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 4836 - 4776
Alignment:
Q  109 tcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacaca 169  Q
    |||||||||||||||||||||| ||||| ||||||||| |||||||||||| |||||||||    
T  4836 tcaagatcctctccatttataactttttccatttgttgtaatttggagagagatagacaca 4776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0712 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 106 - 268
Target Start/End: Original strand, 3030 - 3174
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcc 205  Q
    |||| |||| ||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||| | |                   ||||||||    
T  3030 gggttaagaccctctccatttataaattttttcatttgttgtaatttggagagagatagatacaaaaaaaatg-------------------gtgggtcc 3110  T
Q  206 caccatcattaattatt-tttactttttatgtgtctttatctctctaaatggaggaaatggaga 268  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  3111 caccatcattaattattgtttactttatatgtgtctttatctctctaaatggaggaaatggaga 3174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0709 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 106 - 268
Target Start/End: Original strand, 3050 - 3194
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcc 205  Q
    |||| |||| ||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||| | |                   ||||||||    
T  3050 gggttaagaccctctccatttataaattttttcatttgttgtaatttggagagagatagatacaaaaaaaatg-------------------gtgggtcc 3130  T
Q  206 caccatcattaattatt-tttactttttatgtgtctttatctctctaaatggaggaaatggaga 268  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  3131 caccatcattaattattgtttactttatatgtgtctttatctctctaaatggaggaaatggaga 3194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 16392 - 16469
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat 221  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||| | ||||| |||||||||| |||||||||||||    
T  16392 ttgcaagttggagagagatagacacaaaaaataaatggtgggtcctaccactaagtgggtcccatcatcattaattat 16469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 208143 - 208054
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    |||||| ||||||||| ||| ||||||||||||  |||||||||| | ||||| |||||||||| ||||||||||||| |||||||||||    
T  208143 ttgcaagttggagagagataaacacaaaaaatagatggtgggtcctaccactaagtgggtcccatcatcattaattatattttacttttt 208054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 106 - 167
Target Start/End: Complemental strand, 25750 - 25689
Alignment:
Q  106 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagaaatagaca 167  Q
    |||| |||||||||| ||||||||| ||||| |||||||||||||||||||||| |||||||    
T  25750 gggtaaagatcctctacatttataactttttccatttgttgcaatttggagagagatagaca 25689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 221
Target Start/End: Complemental strand, 7227 - 7150
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat 221  Q
    |||||| ||||||||| ||||||||||||||||  |||||||||| |  | || |||||| |||||||||||||||||    
T  7227 ttgcaagttggagagagatagacacaaaaaatagatggtgggtcctactattaagtgggttccaccatcattaattat 7150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 9196 - 9273
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat 221  Q
    |||||| ||||||||| ||||||||| ||||||  |||||||||| | ||||| |||| | |||||||||||||||||    
T  9196 ttgcaagttggagagagatagacacagaaaatagatggtgggtccaaccactaagtggattccaccatcattaattat 9273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 288
Target Start/End: Original strand, 22533 - 22592
Alignment:
Q  229 ttttatgtgtctttatctctctaaatggaggaaatggagagggaaataaatggagaagat 288  Q
    |||||||||| |||||||||||||||| | ||||||||||  || |||||||||||||||    
T  22533 ttttatgtgtatttatctctctaaatgtaagaaatggagatagacataaatggagaagat 22592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 284
Target Start/End: Original strand, 29566 - 29706
Alignment:
Q  146 gcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttactttt-tatgtgtcttta 243  Q
    ||||||| |||||| ||||| ||| |||||| ||  | ||||| | || || ||| ||||||| |||||||||||  |||||||||| ||||||||||||    
T  29566 gcaatttagagagagatagagacataaaataggtaataggtcctagcattacgtgagtcccactatcattaattacattttacttttttatgtgtcttta 29665  T
Q  244 tctctctaaatggaggaaatggagagggaaataaatggaga 284  Q
    ||| ||||  |||  ||||||||||||   |||||||||||    
T  29666 tctatctagttggtagaaatggagaggatgataaatggaga 29706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 270
Target Start/End: Complemental strand, 13723 - 13639
Alignment:
Q  197 ggtgggtcccaccatcattaattat-ttttact----------ttttatgtgtctttatctctctaaatggaggaaatggagagg 270  Q
    ||||||||||||||||||||||||| |||||||          ||||||||||||||||||||| |||| || ||||||||||||    
T  13723 ggtgggtcccaccatcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagagg 13639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 6430 - 6519
Alignment:
Q  144 ttgcaatttggagagaaatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccaccatcattaattat-ttttacttttt 232  Q
    |||||| ||||| ||| | ||||||||||||||  |||||||||| |  ||||  ||||| | ||||||||||||||| |||||||||||    
T  6430 ttgcaagttggaaagagacagacacaaaaaatagatggtgggtcctacaactaaatgggtacaaccatcattaattatattttacttttt 6519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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