View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20593_low_18 (Length: 356)
Name: NF20593_low_18
Description: NF20593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20593_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 5e-87; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 167 - 340
Target Start/End: Original strand, 50235598 - 50235774
Alignment:
| Q |
167 |
actttatgtgttttgagtaaagaattcactattcaaaacggtgctagcctgcaatgtaggttctactctgtcaataaatgcacaatgtaattaggaattt |
266 |
Q |
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| T |
50235598 |
actttatgtgttttgagtaaagaattcactattcaaaacggtgctagcctgcaatgtaggttctactctgtcaataaatgcacaatgtaattaggaattt |
50235697 |
T |
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| Q |
267 |
caaataactatgacttctgttaaaaataatgccgaaggaaacaat---tgataatatcattgtgatcacacacaatt |
340 |
Q |
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| T |
50235698 |
caaataactatgacttctgttaaaaataatgccgaaggaaacaattgatgataatatcattgtgatcacacacaatt |
50235774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 48 - 177
Target Start/End: Complemental strand, 50234498 - 50234369
Alignment:
| Q |
48 |
atgtgtggtgtgtgggattagtggtcaattttaattatagtaaagtcaaaattgtaacagaaattgtgatctggtggtttaaagagggaagcattttgga |
147 |
Q |
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| T |
50234498 |
atgtgtggtgtgtgggattagtggtcaattttaattatagtaaagtcaaaattgtaacagaaattgtgatctggtggtttaaagagggaagcattttgga |
50234399 |
T |
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| Q |
148 |
tggttggccatgctttgtgactttatgtgt |
177 |
Q |
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| T |
50234398 |
tggttgggcatgctttgtgactttatgtgt |
50234369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 50235556 - 50235608
Alignment:
| Q |
1 |
aatgattgatgtggattctttacatacgttttatggtgcataactttatgtgt |
53 |
Q |
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| T |
50235556 |
aatgattgatgtggattctttacatacgttttatggtgcataactttatgtgt |
50235608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 340
Target Start/End: Complemental strand, 44803306 - 44803273
Alignment:
| Q |
307 |
acaattgataatatcattgtgatcacacacaatt |
340 |
Q |
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| T |
44803306 |
acaattgataatatcattgtgatcacacccaatt |
44803273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 340
Target Start/End: Original strand, 12908733 - 12908766
Alignment:
| Q |
307 |
acaattgataatatcattgtgatcacacacaatt |
340 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
12908733 |
acaatttataatatcattgtgatcacacacaatt |
12908766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 340
Target Start/End: Complemental strand, 12910849 - 12910820
Alignment:
| Q |
311 |
ttgataatatcattgtgatcacacacaatt |
340 |
Q |
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| T |
12910849 |
ttgataatatcattgtgatcacacacaatt |
12910820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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