View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20593_low_21 (Length: 306)
Name: NF20593_low_21
Description: NF20593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20593_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 54 - 289
Target Start/End: Complemental strand, 3432565 - 3432330
Alignment:
| Q |
54 |
ttttagttattgaagggattgtgtttgatacgaaagcatgtgtaaagtttgatgtgtttattaatgataaagataaggtggttaagccatttaatacaga |
153 |
Q |
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| T |
3432565 |
ttttagttattgaagggattgtgtttgatacgaaagcatgtgtaaagtttgatgtgtttattaatgataaagataaggtggttaagccatttaatacaga |
3432466 |
T |
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| Q |
154 |
gtttgctgggagctttgtgaatgtacctcattctttgcatgaacaaacaatgaagaatattaatagtagttgtagatttggattaacggacttgctggaa |
253 |
Q |
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| T |
3432465 |
gtttgctgggagctttgtgaatgtacctcattctttgcatgaacaaacaatgaagaatattaatagtagttgtagatttggattaacggacttgctggaa |
3432366 |
T |
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| Q |
254 |
gatttgggagttgatgatgatgacagtgttgtggtt |
289 |
Q |
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| T |
3432365 |
gatttgggagttgatgatgatgacagtgttgtggtt |
3432330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 54 - 289
Target Start/End: Complemental strand, 3426395 - 3426157
Alignment:
| Q |
54 |
ttttagttattgaagggattgtgtttgatacgaaagcatgtgtaaagtttgatgtgtttattaatgataaagat---aaggtggttaagccatttaatac |
150 |
Q |
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| T |
3426395 |
ttttagtgattgaagggattgagtttgataagagtttaggtgttaagtttgatgttttcattaatgatgaagatgataaggtgattaagccagttaatac |
3426296 |
T |
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| Q |
151 |
agagtttgctgggagctttgtgaatgtacctcattctttgcatgaacaaacaatgaagaatattaatagtagttgtagatttggattaacggacttgctg |
250 |
Q |
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| T |
3426295 |
ggagtttgctggaagctttgtgaatgtacctcattcttcccatgatcacaaaaagaagaagactaatagttgtttaagggttggattaacggatttgttg |
3426196 |
T |
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| Q |
251 |
gaagatttgggagttgatgatgatgacagtgttgtggtt |
289 |
Q |
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| T |
3426195 |
gaagatttgggagctgaggatgatgatagcgttgtggtt |
3426157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 202 - 289
Target Start/End: Original strand, 11913093 - 11913180
Alignment:
| Q |
202 |
aatgaagaatattaatagtagttgtagatttggattaacggacttgctggaagatttgggagttgatgatgatgacagtgttgtggtt |
289 |
Q |
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| T |
11913093 |
aatgaagaatattaatagtagttgcagatttggattaacggacttgctggaagatttgggagctgacgatgatgacagtgttgtggtt |
11913180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 54 - 289
Target Start/End: Original strand, 11897899 - 11898137
Alignment:
| Q |
54 |
ttttagttattgaagggattgtgtttgatacgaaagcatgtgtaaagtttgatgtgtttattaatgataaagat---aaggtggttaagccatttaatac |
150 |
Q |
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| T |
11897899 |
ttttagtgattgaagggattgagtttgataagagtttaggtgttaagtttgatgttttcattaatgatgaagatgctaaggagattaagccagttaatac |
11897998 |
T |
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| Q |
151 |
agagtttgctgggagctttgtgaatgtacctcattctttgcatgaacaaacaatgaagaatattaatagtagttgtagatttggattaacggacttgctg |
250 |
Q |
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| T |
11897999 |
ggagtttgctggaagctttgtgaatgtacctcattcttcccatgatcacaaaaagaagaagactaatagctgtttaagggttggattaacggatttgttg |
11898098 |
T |
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| Q |
251 |
gaagatttgggagttgatgatgatgacagtgttgtggtt |
289 |
Q |
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| T |
11898099 |
aaagatttgggagctgaggatgatgatagcattgtggtt |
11898137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 150
Target Start/End: Original strand, 11912983 - 11913066
Alignment:
| Q |
66 |
aagggattgtgtttgatacgaaagcatgtgtaaagtttgatgtgtttattaatgataaagataaggtggttaagccatttaatac |
150 |
Q |
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| T |
11912983 |
aagggattgagtttgatacgaacatacgtgtaaagtttgatgtgtttattaatgatgaa-ataaggtggttaagccatttaatac |
11913066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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