View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20593_low_25 (Length: 270)
Name: NF20593_low_25
Description: NF20593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20593_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 20 - 259
Target Start/End: Original strand, 49273144 - 49273384
Alignment:
| Q |
20 |
aacataaagcaaaaaagtgtctagatacatgtcaggccgtaaaaaagacttagacttggtgcatcacaattaatatgtgatcatggtttgtttagtaaaa |
119 |
Q |
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| T |
49273144 |
aacataaagcaaaaaagtgtctagatacatgtcaggccgtaaaaaagacttagacttggtgcatcacaattaatatgtgatcatggtttgtttagtaaaa |
49273243 |
T |
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| Q |
120 |
gaa-gtgtcacctgaaaatatgttatgtgcatgattcctgctctattttcttatgcaacacttcaggcactagtcagattgtttctgatgcaaagtatga |
218 |
Q |
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| T |
49273244 |
gaaagtgtcacctgaaaatatgttatgggcatgattcctgctctattttcttatgcaacacttcaggcactagtcagattgtttctgatgcaaagtatga |
49273343 |
T |
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| Q |
219 |
tacttcttcttgttatagagtcctctattaccctttgcttc |
259 |
Q |
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| T |
49273344 |
tacttcttcttgttatagagtcctctattaccctttacttc |
49273384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 134 - 255
Target Start/End: Complemental strand, 49274122 - 49274001
Alignment:
| Q |
134 |
aaatatgttatgtgcatgattcctgctctattttcttatgcaacacttcaggcactagtcagattgtttctgatgcaaagtatgatacttcttcttgtta |
233 |
Q |
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||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||| ||||||||||||||| ||||| ||| | |||||| |
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| T |
49274122 |
aaatatgctatgtgcatgattcctgctctatttgcttatgcaacacttcaggcacgggtccgatactttctgatgcaaagtttgatatttcctgttgtta |
49274023 |
T |
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| Q |
234 |
tagagtcctctattaccctttg |
255 |
Q |
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| T |
49274022 |
taggttcctctgttaccctttg |
49274001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 143 - 235
Target Start/End: Original strand, 49268244 - 49268336
Alignment:
| Q |
143 |
atgtgcatgattcctgctctattttcttatgcaacacttcaggcactagtcagattgtttctgatgcaaagtatgatacttcttcttgttata |
235 |
Q |
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| T |
49268244 |
atgtgcatgattcctgctctatttgcttatgcaacgcttcaggcactggtcagatactttctgatgcaaagtttgatacttcctcttgttata |
49268336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 132 - 253
Target Start/End: Original strand, 49255509 - 49255630
Alignment:
| Q |
132 |
gaaaatatgttatgtgcatgattcctgctctattttcttatgcaacacttcaggcactagtcagattgtttctgatgcaaagtatgatacttcttcttgt |
231 |
Q |
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|||||| || ||||||||||||||||||||| ||| |||||||||| ||||||||||| ||||||| ||||| ||||||||| || | |||| |||||| |
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| T |
49255509 |
gaaaatttgctatgtgcatgattcctgctctttttgcttatgcaactcttcaggcactggtcagatactttcttatgcaaagtttggttcttcctcttgt |
49255608 |
T |
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| Q |
232 |
tatagagtcctctattaccctt |
253 |
Q |
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|||| |||||| |||||||| |
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| T |
49255609 |
tataagttcctctgttaccctt |
49255630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 132 - 235
Target Start/End: Original strand, 29356756 - 29356859
Alignment:
| Q |
132 |
gaaaatatgttatgtgcatgattcctgctctattttcttatgcaacacttcaggcactagtcagattgtttctgatgcaaagtatgatacttcttcttgt |
231 |
Q |
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|||||| || ||||||||||||||||||||||||| |||||||||| | || | || | |||| || ||||||||||||||| ||||| ||| |||||| |
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| T |
29356756 |
gaaaatttgctatgtgcatgattcctgctctatttgcttatgcaactcctcggccaatggtcatatactttctgatgcaaagtttgatagttcatcttgt |
29356855 |
T |
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| Q |
232 |
tata |
235 |
Q |
| |
|
|||| |
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|
| T |
29356856 |
tata |
29356859 |
T |
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