View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20593_low_26 (Length: 269)
Name: NF20593_low_26
Description: NF20593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20593_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 20 - 258
Target Start/End: Complemental strand, 22210452 - 22210225
Alignment:
| Q |
20 |
tcagcttctctccttcttgcttctatctcagtatgctgtggggaaagaacagagagcaaacacacaaaggagatgactctttttgtagtcgctttgtaat |
119 |
Q |
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| T |
22210452 |
tcagcttctctccttcttgcttctatctcagtatgctgtggggaaagaacagagagcaaacacacaaaggagatgactctttttgtagtcgctttgtaat |
22210353 |
T |
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| Q |
120 |
aaacgagttacattgacttcagttacattctcttatcttgaatttttctttctcttgaattaagtatcgctttgtaataatcaaatttttctttctcttt |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
22210352 |
aaacgagttacattgacttcagttacattctcttatcttgaatttttctttctcttgaattaagtatcgcttt-----------atttttctttctcttt |
22210264 |
T |
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| Q |
220 |
attatacttacatcaataataaagattagaatatttcat |
258 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
22210263 |
attatacttacatcaataataaagattagaatatttcat |
22210225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 150 - 258
Target Start/End: Complemental strand, 42708732 - 42708623
Alignment:
| Q |
150 |
tcttatcttgaatttttctttctcttgaattaagtatcgctttgtaataatcaaatttttctttctctttattata-cttacatcaataataaagattag |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||| ||| ||||||||||| ||||| |||||||||||||||| |
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| T |
42708732 |
tcttatcttgaatttttctttctcttgaattaagtatcactttgtaataaccaatttttcttttatctttattatatcttacgacaataataaagattag |
42708633 |
T |
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| Q |
249 |
aatatttcat |
258 |
Q |
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| T |
42708632 |
gatatttcat |
42708623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 42708833 - 42708758
Alignment:
| Q |
91 |
gatgactctttttgtagtcgctttgtaataaacgagttacattgacttcagttacattctcttatcttgaattttt |
166 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||| |
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| T |
42708833 |
gatgactctttttgtagtcgctttgtaataaacgagttacattcacttcagatacattctcttatcttgatttttt |
42708758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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