View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20593_low_32 (Length: 221)
Name: NF20593_low_32
Description: NF20593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20593_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 64 - 200
Target Start/End: Original strand, 9334007 - 9334138
Alignment:
| Q |
64 |
agcctaagctcctcagttgagagaaaactattctctctactgcctaccacaagggttctaacagaatggtgattgcacgaacttgccaaacctcatgctc |
163 |
Q |
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| T |
9334007 |
agcctaagctcctcagttgagagaaaactattctctctactgcctacct-----gttctaacagaatggtgattgtatgaacttgccaaacctcatgctc |
9334101 |
T |
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| Q |
164 |
accatctttattggaatattctaagaacaaaagaaaa |
200 |
Q |
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| T |
9334102 |
actatctttattggaatattctaagaacaaaagaaaa |
9334138 |
T |
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Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 64 - 139
Target Start/End: Original strand, 9328708 - 9328783
Alignment:
| Q |
64 |
agcctaagctcctcagttgagagaaaactattctctctactgcctaccacaagggttctaacagaatggtgattgc |
139 |
Q |
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| T |
9328708 |
agcctaagatcctcttttgagagaaaactattctctctactgcctaccacaagtgttctaacagaatgttgattgc |
9328783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 9333529 - 9333579
Alignment:
| Q |
17 |
aaaatcatgaagagtgaatgtaagaacctgcactctcacatgagtcaagcc |
67 |
Q |
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| T |
9333529 |
aaaatcatgaagagtgaatgtaagaacctgcactctcacatgagtcaagcc |
9333579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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